Wall clock time and date at job start Mon Mar 30 2020 23:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30506 * 125.64820 * 2 1 4 4 C 1.34125 * 109.25420 * 180.29188 * 3 2 1 5 5 C 1.34679 * 108.02003 * 359.72584 * 4 3 2 6 6 N 1.35040 * 125.64864 * 179.82429 * 2 1 3 7 7 C 1.46495 * 126.40078 * 359.97438 * 6 2 1 8 8 C 1.50696 * 109.47240 * 84.71350 * 7 6 2 9 9 O 1.21282 * 120.00113 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00394 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00403 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47479 * 179.97438 * 11 10 8 13 13 C 1.31005 * 120.00455 * 127.15179 * 12 11 10 14 14 C 1.50697 * 119.99510 * 7.56015 * 13 12 11 15 15 N 1.46505 * 109.47181 * 127.00481 * 14 13 12 16 16 C 1.36938 * 120.00448 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99649 * 0.02562 * 16 15 14 18 18 C 1.38806 * 120.00185 * 179.97438 * 16 15 14 19 19 N 1.31625 * 120.00077 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00057 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46915 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46839 * 120.00424 * 20 18 16 23 23 H 1.48495 * 109.47262 * 240.00583 * 20 18 16 24 24 H 1.08999 * 109.47038 * 270.17421 * 1 2 3 25 25 H 1.08999 * 109.47383 * 30.17572 * 1 2 3 26 26 H 1.08994 * 109.47094 * 150.17671 * 1 2 3 27 27 H 1.07997 * 125.99227 * 179.72510 * 4 3 2 28 28 H 1.07995 * 126.59129 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.46907 * 324.71307 * 7 6 2 30 30 H 1.08995 * 109.47558 * 204.71598 * 7 6 2 31 31 H 0.97002 * 120.00091 * 359.97438 * 10 8 7 32 32 H 1.09007 * 109.47163 * 299.99366 * 11 10 8 33 33 H 1.09002 * 109.47508 * 59.99431 * 11 10 8 34 34 H 1.08001 * 119.99986 * 307.15440 * 12 11 10 35 35 H 1.07998 * 120.00449 * 187.55984 * 13 12 11 36 36 H 1.08997 * 109.47414 * 247.00127 * 14 13 12 37 37 H 1.08999 * 109.47299 * 7.00555 * 14 13 12 38 38 H 0.97005 * 119.99864 * 359.97438 * 15 14 13 39 39 H 0.97000 * 120.00046 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6820 -0.0065 5 6 3.5926 -0.6643 -0.0045 6 7 2.2940 -1.0973 0.0034 7 6 1.8425 -2.4910 0.0082 8 6 1.5627 -2.9332 -1.4050 9 8 1.7249 -2.1605 -2.3256 10 7 1.1321 -4.1874 -1.6459 11 6 0.8606 -4.6175 -3.0197 12 6 0.3960 -6.0511 -3.0148 13 6 -0.7225 -6.3793 -3.6127 14 6 -1.4567 -5.3624 -4.4481 15 7 -1.7113 -5.9168 -5.7801 16 6 -2.3708 -5.1687 -6.7185 17 1 -2.7029 -4.1698 -6.4768 18 6 -2.6115 -5.6938 -7.9807 19 7 -2.2063 -6.9110 -8.2754 20 14 -3.5105 -4.6731 -9.2611 21 1 -3.8568 -3.3491 -8.6845 22 1 -2.6357 -4.4831 -10.4459 23 1 -4.7531 -5.3754 -9.6707 24 1 -0.3633 0.0031 1.0277 25 1 -0.3634 0.8884 -0.5165 26 1 -0.3633 -0.8915 -0.5111 27 1 4.4098 1.3411 -0.0122 28 1 4.4776 -1.2832 -0.0087 29 1 0.9328 -2.5761 0.6025 30 1 2.6187 -3.1229 0.4396 31 1 1.0027 -4.8056 -0.9097 32 1 0.0847 -3.9853 -3.4518 33 1 1.7707 -4.5329 -3.6136 34 1 0.9852 -6.8079 -2.5184 35 1 -1.1183 -7.3785 -3.5070 36 1 -2.4047 -5.1157 -3.9700 37 1 -0.8505 -4.4612 -4.5394 38 1 -1.4127 -6.8138 -5.9973 39 1 -2.3749 -7.2781 -9.1573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321402429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:38 Heat of formation + Delta-G solvation = 38.133947 kcal Electronic energy + Delta-G solvation = -20495.810264 eV Core-core repulsion = 17246.712375 eV Total energy + Delta-G solvation = -3249.097889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.09492 -40.71888 -38.02456 -36.16494 -35.02158 -34.42662 -32.64005 -32.39160 -29.62262 -27.91869 -27.46188 -26.14147 -24.41717 -22.44108 -22.06781 -20.87084 -20.09453 -19.13538 -18.24450 -18.13920 -17.38162 -16.75599 -16.55278 -16.16516 -15.74062 -15.39077 -15.23024 -15.07860 -14.77383 -14.56813 -14.21880 -13.98747 -13.92418 -13.49024 -13.38682 -13.24022 -13.12056 -12.96001 -12.75606 -12.16013 -11.93727 -11.67944 -11.53883 -11.05222 -10.98227 -10.59302 -10.34924 -9.96771 -9.26661 -9.01684 -8.00398 -5.29718 0.87681 1.13435 1.44180 1.45339 1.46197 1.56410 1.74516 2.18305 2.35567 2.54103 3.33483 3.59380 3.63707 3.76757 3.80305 3.92312 4.11716 4.13564 4.16051 4.32712 4.42665 4.55976 4.58316 4.67648 4.82969 4.83842 4.89835 5.00360 5.05832 5.29130 5.30240 5.43810 5.57832 5.83900 5.84900 6.17339 6.22952 6.48526 7.13674 7.15518 7.28906 8.02770 8.26803 9.23179 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.002948 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.789628 B = 9495.239543 C =10229.881246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.201 3.799 3 N -0.537 5.537 4 C -0.059 4.059 5 C -0.047 4.047 6 N -0.446 5.446 7 C 0.089 3.911 8 C 0.489 3.511 9 O -0.580 6.580 10 N -0.698 5.698 11 C 0.142 3.858 12 C -0.157 4.157 13 C -0.135 4.135 14 C 0.160 3.840 15 N -0.742 5.742 16 C -0.250 4.250 17 H 0.073 0.927 18 C -0.073 4.073 19 N -0.967 5.967 20 Si 0.974 3.026 21 H -0.268 1.268 22 H -0.292 1.292 23 H -0.288 1.288 24 H 0.106 0.894 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.182 0.818 28 H 0.205 0.795 29 H 0.158 0.842 30 H 0.167 0.833 31 H 0.424 0.576 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.154 0.846 35 H 0.125 0.875 36 H 0.025 0.975 37 H 0.030 0.970 38 H 0.376 0.624 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.103 4.291 24.951 27.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.062 4.062 3 N -0.258 5.258 4 C -0.205 4.205 5 C -0.179 4.179 6 N -0.129 5.129 7 C -0.036 4.036 8 C 0.275 3.725 9 O -0.459 6.459 10 N -0.352 5.352 11 C 0.018 3.982 12 C -0.176 4.176 13 C -0.154 4.154 14 C 0.035 3.965 15 N -0.385 5.385 16 C -0.381 4.381 17 H 0.091 0.909 18 C -0.266 4.266 19 N -0.618 5.618 20 Si 0.802 3.198 21 H -0.193 1.193 22 H -0.219 1.219 23 H -0.215 1.215 24 H 0.125 0.875 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.199 0.801 28 H 0.222 0.778 29 H 0.175 0.825 30 H 0.184 0.816 31 H 0.262 0.738 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.172 0.828 35 H 0.143 0.857 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.208 0.792 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.809 5.670 24.258 26.774 hybrid contribution -0.031 -0.933 -1.182 1.506 sum 9.779 4.737 23.076 25.507 Atomic orbital electron populations 1.20270 0.83575 1.04063 1.04705 1.23748 0.96761 0.81545 1.04149 1.70185 1.03645 1.29861 1.22066 1.22666 0.94710 0.94196 1.08962 1.23162 0.87667 0.96861 1.10244 1.45042 1.06621 1.06856 1.54349 1.22027 1.07398 0.80605 0.93598 1.21440 0.76852 0.82067 0.92183 1.90828 1.53190 1.54304 1.47587 1.45693 1.66910 1.13049 1.09534 1.20341 1.00311 0.93980 0.83548 1.22782 0.95975 0.95881 1.02940 1.23048 0.95951 1.00125 0.96274 1.20092 0.96699 0.94919 0.84817 1.42492 1.69019 1.17223 1.09748 1.19657 1.28007 0.97621 0.92843 0.90915 1.25580 1.03143 0.98009 0.99842 1.69814 1.53407 1.16863 1.21698 0.85073 0.77648 0.78173 0.78876 1.19265 1.21910 1.21517 0.87540 0.90073 0.90611 0.80087 0.77802 0.82456 0.81557 0.73787 0.92182 0.92285 0.82807 0.85706 0.95689 0.95195 0.79217 0.93809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 10.04 71.24 0.72 -0.46 16 2 C 0.20 4.76 7.88 138.13 1.09 5.84 16 3 N -0.54 -15.39 11.25 -188.13 -2.12 -17.50 16 4 C -0.06 -1.39 11.87 83.53 0.99 -0.40 16 5 C -0.05 -0.88 11.58 83.09 0.96 0.08 16 6 N -0.45 -8.30 2.24 -518.35 -1.16 -9.47 16 7 C 0.09 0.85 6.15 85.63 0.53 1.37 16 8 C 0.49 9.33 7.90 87.66 0.69 10.03 16 9 O -0.58 -18.86 16.42 -3.04 -0.05 -18.91 16 10 N -0.70 -10.58 5.55 -466.80 -2.59 -13.17 16 11 C 0.14 3.40 5.76 85.63 0.49 3.90 16 12 C -0.16 -3.34 9.63 25.64 0.25 -3.09 16 13 C -0.13 -3.86 9.63 25.64 0.25 -3.61 16 14 C 0.16 6.33 6.35 85.63 0.54 6.87 16 15 N -0.74 -38.20 5.59 -347.18 -1.94 -40.14 16 16 C -0.25 -14.26 9.99 84.03 0.84 -13.42 16 17 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 18 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 19 N -0.97 -59.53 13.06 21.65 0.28 -59.25 16 20 Si 0.97 46.84 29.55 68.60 2.03 48.87 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 24 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.08 1.22 7.84 -2.39 -0.02 1.20 16 27 H 0.18 3.37 8.06 -2.91 -0.02 3.35 16 28 H 0.21 2.22 8.06 -2.91 -0.02 2.19 16 29 H 0.16 0.43 7.94 -2.39 -0.02 0.41 16 30 H 0.17 0.17 8.13 -2.39 -0.02 0.15 16 31 H 0.42 2.56 8.46 -92.71 -0.78 1.78 16 32 H 0.06 1.86 5.30 -2.38 -0.01 1.85 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 36 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.03 1.23 5.29 -2.39 -0.01 1.22 16 38 H 0.38 20.31 7.66 -92.70 -0.71 19.60 16 39 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -85.22 338.83 1.84 -83.38 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -0.42 Total: 22.92 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 7.81 Total: 3.28 kcal Atomic # 7 Polarization: -132.01 SS G_CDS: -7.53 Total: -139.53 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.05 Total: -18.91 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -85.22 1.84 -83.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321402429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.510 kcal (2) G-P(sol) polarization free energy of solvation -85.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds