Wall clock time and date at job start Mon Mar 30 2020 23:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30493 * 125.65400 * 2 1 4 4 C 1.34132 * 109.25643 * 180.29457 * 3 2 1 5 5 C 1.34668 * 108.02185 * 359.72322 * 4 3 2 6 6 N 1.35049 * 125.64332 * 179.82838 * 2 1 3 7 7 C 1.46491 * 126.40241 * 359.97186 * 6 2 1 8 8 C 1.50702 * 109.46957 * 84.71414 * 7 6 2 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.50694 * 109.47550 * 180.02562 * 11 10 8 13 13 C 1.31003 * 120.00016 * 124.99989 * 12 11 10 14 14 C 1.50701 * 119.99850 * 180.02562 * 13 12 11 15 15 N 1.46503 * 109.46896 * 125.00305 * 14 13 12 16 16 C 1.36944 * 119.99768 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99903 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99534 * 179.97438 * 16 15 14 19 19 N 1.31612 * 120.00334 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99654 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47089 * 89.99965 * 20 18 16 22 22 H 1.48500 * 109.47160 * 210.00058 * 20 18 16 23 23 H 1.48501 * 109.47369 * 330.00208 * 20 18 16 24 24 H 1.09001 * 109.46773 * 270.17549 * 1 2 3 25 25 H 1.08998 * 109.46646 * 30.16986 * 1 2 3 26 26 H 1.08992 * 109.47415 * 150.17244 * 1 2 3 27 27 H 1.07996 * 125.98763 * 179.72768 * 4 3 2 28 28 H 1.07997 * 126.59179 * 179.97438 * 5 4 3 29 29 H 1.09004 * 109.47166 * 324.71679 * 7 6 2 30 30 H 1.08994 * 109.47507 * 204.71386 * 7 6 2 31 31 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 32 32 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 33 33 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 34 34 H 1.08002 * 120.00062 * 305.00756 * 12 11 10 35 35 H 1.07995 * 120.00110 * 0.02562 * 13 12 11 36 36 H 1.08998 * 109.47070 * 244.99982 * 14 13 12 37 37 H 1.09005 * 109.47342 * 5.00198 * 14 13 12 38 38 H 0.96995 * 119.99897 * 359.97438 * 15 14 13 39 39 H 0.97003 * 120.00040 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0603 0.0000 4 6 3.5544 0.6817 -0.0065 5 6 3.5926 -0.6645 -0.0045 6 7 2.2940 -1.0975 0.0033 7 6 1.8424 -2.4911 0.0080 8 6 1.5625 -2.9332 -1.4052 9 8 1.7247 -2.1604 -2.3258 10 7 1.1377 -4.1892 -1.6467 11 6 0.8713 -4.6210 -3.0211 12 6 0.4115 -6.0560 -3.0167 13 6 -0.7252 -6.3813 -3.5810 14 6 -1.1853 -7.8163 -3.5761 15 7 -2.5255 -7.8974 -2.9897 16 6 -3.1521 -9.1100 -2.8790 17 1 -2.6586 -10.0064 -3.2242 18 6 -4.4217 -9.1868 -2.3229 19 7 -5.0229 -8.0944 -1.9017 20 14 -5.2768 -10.8408 -2.1724 21 1 -4.9372 -11.4565 -0.8643 22 1 -6.7465 -10.6482 -2.2621 23 1 -4.8265 -11.7327 -3.2710 24 1 -0.3633 0.0031 1.0277 25 1 -0.3632 0.8885 -0.5165 26 1 -0.3634 -0.8914 -0.5111 27 1 4.4099 1.3408 -0.0123 28 1 4.4776 -1.2834 -0.0088 29 1 0.9326 -2.5762 0.6023 30 1 2.6186 -3.1231 0.4394 31 1 1.0082 -4.8074 -0.9105 32 1 0.0942 -3.9920 -3.4553 33 1 1.7826 -4.5328 -3.6126 34 1 1.0189 -6.8163 -2.5483 35 1 -1.3324 -5.6211 -4.0496 36 1 -1.2129 -8.1925 -4.5987 37 1 -0.4936 -8.4177 -2.9862 38 1 -2.9685 -7.0923 -2.6793 39 1 -5.9099 -8.1482 -1.5127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321402430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:41 Heat of formation + Delta-G solvation = 56.301965 kcal Electronic energy + Delta-G solvation = -20180.776345 eV Core-core repulsion = 16932.466280 eV Total energy + Delta-G solvation = -3248.310065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.33043 -39.83087 -36.46516 -34.87957 -34.24085 -32.95897 -31.90593 -30.77180 -28.78243 -27.12550 -26.55989 -24.17372 -22.11354 -21.61018 -21.22109 -20.10977 -19.49469 -17.79835 -17.48144 -17.15708 -15.98973 -15.83108 -15.38303 -14.82935 -14.62948 -14.12516 -14.10152 -13.86655 -13.62132 -13.32366 -13.19807 -13.08021 -12.81437 -12.58245 -12.52047 -12.12323 -11.94934 -11.11709 -10.88887 -10.75314 -10.62060 -10.14810 -10.13836 -9.89123 -9.74774 -9.45155 -9.11597 -8.83163 -8.48821 -7.03164 -5.85446 -3.15405 1.71494 2.13717 2.19589 2.43618 3.01512 3.16038 3.37726 3.43195 3.44950 4.23935 4.29502 4.33346 4.52468 4.55369 4.57341 4.83424 5.09286 5.11571 5.26090 5.31871 5.44945 5.48253 5.57307 5.65395 5.70471 5.87263 6.02826 6.06131 6.07999 6.36383 6.47332 6.58416 6.77340 6.91266 7.02447 7.17321 7.61227 7.82619 7.95028 8.32784 9.44282 9.99578 10.34801 11.37201 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030210 B = 0.002519 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.630843 B =11114.523899 C =11664.143763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.221 3.779 3 N -0.493 5.493 4 C -0.027 4.027 5 C -0.053 4.053 6 N -0.443 5.443 7 C 0.084 3.916 8 C 0.492 3.508 9 O -0.523 6.523 10 N -0.718 5.718 11 C 0.157 3.843 12 C -0.205 4.205 13 C -0.102 4.102 14 C 0.172 3.828 15 N -0.730 5.730 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.169 0.831 28 H 0.172 0.828 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.406 0.594 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.032 0.968 37 H 0.026 0.974 38 H 0.385 0.615 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.365 11.544 5.346 20.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.041 4.041 3 N -0.212 5.212 4 C -0.174 4.174 5 C -0.185 4.185 6 N -0.126 5.126 7 C -0.043 4.043 8 C 0.276 3.724 9 O -0.398 6.398 10 N -0.370 5.370 11 C 0.034 3.966 12 C -0.225 4.225 13 C -0.121 4.121 14 C 0.045 3.955 15 N -0.374 5.374 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 H 0.100 0.900 25 H 0.110 0.890 26 H 0.090 0.910 27 H 0.186 0.814 28 H 0.190 0.810 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.240 0.760 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.049 0.951 37 H 0.044 0.956 38 H 0.219 0.781 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.128 12.602 4.649 20.989 hybrid contribution -0.286 -1.948 0.476 2.025 sum 15.842 10.654 5.125 19.767 Atomic orbital electron populations 1.20206 0.84995 1.04373 1.03335 1.23285 0.95677 0.81086 1.04037 1.70251 1.02309 1.28054 1.20629 1.22229 0.94795 0.92682 1.07687 1.22620 0.86658 0.96976 1.12253 1.44849 1.06818 1.05834 1.55124 1.21689 1.04441 0.81973 0.96217 1.20715 0.78060 0.82535 0.91101 1.90802 1.50915 1.52754 1.45341 1.46006 1.67796 1.12770 1.10460 1.20347 1.00968 0.93143 0.82127 1.22659 0.99123 0.95520 1.05159 1.23369 0.94453 0.99239 0.95070 1.19836 0.88631 0.90174 0.96889 1.42291 1.13727 1.07780 1.73613 1.19239 0.97911 0.86362 1.33970 0.91049 1.24769 0.97400 0.97241 1.01477 1.69659 1.15256 1.26345 1.46803 0.86160 0.78876 0.83140 0.77818 1.21632 1.21665 1.20681 0.90049 0.88981 0.90969 0.81355 0.81037 0.85798 0.85822 0.75966 0.91031 0.90983 0.86650 0.87222 0.95056 0.95633 0.78147 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.04 36.01 0.36 -0.29 16 2 C 0.22 2.68 7.88 -155.41 -1.23 1.46 16 3 N -0.49 -6.84 11.25 -10.82 -0.12 -6.96 16 4 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 5 C -0.05 -0.54 11.58 -16.56 -0.19 -0.73 16 6 N -0.44 -4.60 2.24 -115.19 -0.26 -4.85 16 7 C 0.08 0.60 6.16 -5.20 -0.03 0.56 16 8 C 0.49 5.14 7.90 -10.98 -0.09 5.05 16 9 O -0.52 -7.96 16.42 5.55 0.09 -7.87 16 10 N -0.72 -6.63 5.55 -61.47 -0.34 -6.97 16 11 C 0.16 1.74 6.11 -5.20 -0.03 1.71 16 12 C -0.21 -2.48 9.24 -36.03 -0.33 -2.82 16 13 C -0.10 -1.53 9.24 -36.03 -0.33 -1.86 16 14 C 0.17 3.26 6.70 -5.19 -0.03 3.23 16 15 N -0.73 -17.95 5.59 -61.08 -0.34 -18.29 16 16 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 20 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.64 7.84 -51.93 -0.41 0.23 16 27 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.12 0.60 7.94 -51.93 -0.41 0.18 16 30 H 0.12 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.41 2.78 8.46 -40.82 -0.35 2.43 16 32 H 0.07 0.88 7.79 -51.93 -0.40 0.48 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.12 1.30 7.84 -52.49 -0.41 0.89 16 35 H 0.11 1.63 7.84 -52.49 -0.41 1.22 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.03 0.48 7.79 -51.93 -0.40 0.08 16 38 H 0.38 9.95 7.66 -40.82 -0.31 9.64 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 343.31 15.07 5.17 5.17 Total: -1.00 -35.88 343.31 -8.08 -43.95 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -5.61 Total: 7.33 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -2.36 Total: -1.48 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -0.34 Total: -63.95 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.87 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.88 -8.08 -43.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321402430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.254 kcal (2) G-P(sol) polarization free energy of solvation -35.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds