Wall clock time and date at job start Mon Mar 30 2020 23:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30493 * 125.65400 * 2 1 4 4 C 1.34132 * 109.25643 * 180.29457 * 3 2 1 5 5 C 1.34668 * 108.02185 * 359.72322 * 4 3 2 6 6 N 1.35049 * 125.64332 * 179.82838 * 2 1 3 7 7 C 1.46491 * 126.40241 * 359.97186 * 6 2 1 8 8 C 1.50702 * 109.46957 * 84.71414 * 7 6 2 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.50694 * 109.47550 * 180.02562 * 11 10 8 13 13 C 1.31003 * 120.00016 * 124.99989 * 12 11 10 14 14 C 1.50701 * 119.99850 * 180.02562 * 13 12 11 15 15 N 1.46503 * 109.46896 * 125.00305 * 14 13 12 16 16 C 1.36944 * 119.99768 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99903 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99534 * 179.97438 * 16 15 14 19 19 N 1.31612 * 120.00334 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99654 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47089 * 89.99965 * 20 18 16 22 22 H 1.48500 * 109.47160 * 210.00058 * 20 18 16 23 23 H 1.48501 * 109.47369 * 330.00208 * 20 18 16 24 24 H 1.09001 * 109.46773 * 270.17549 * 1 2 3 25 25 H 1.08998 * 109.46646 * 30.16986 * 1 2 3 26 26 H 1.08992 * 109.47415 * 150.17244 * 1 2 3 27 27 H 1.07996 * 125.98763 * 179.72768 * 4 3 2 28 28 H 1.07997 * 126.59179 * 179.97438 * 5 4 3 29 29 H 1.09004 * 109.47166 * 324.71679 * 7 6 2 30 30 H 1.08994 * 109.47507 * 204.71386 * 7 6 2 31 31 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 32 32 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 33 33 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 34 34 H 1.08002 * 120.00062 * 305.00756 * 12 11 10 35 35 H 1.07995 * 120.00110 * 0.02562 * 13 12 11 36 36 H 1.08998 * 109.47070 * 244.99982 * 14 13 12 37 37 H 1.09005 * 109.47342 * 5.00198 * 14 13 12 38 38 H 0.96995 * 119.99897 * 359.97438 * 15 14 13 39 39 H 0.97003 * 120.00040 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0603 0.0000 4 6 3.5544 0.6817 -0.0065 5 6 3.5926 -0.6645 -0.0045 6 7 2.2940 -1.0975 0.0033 7 6 1.8424 -2.4911 0.0080 8 6 1.5625 -2.9332 -1.4052 9 8 1.7247 -2.1604 -2.3258 10 7 1.1377 -4.1892 -1.6467 11 6 0.8713 -4.6210 -3.0211 12 6 0.4115 -6.0560 -3.0167 13 6 -0.7252 -6.3813 -3.5810 14 6 -1.1853 -7.8163 -3.5761 15 7 -2.5255 -7.8974 -2.9897 16 6 -3.1521 -9.1100 -2.8790 17 1 -2.6586 -10.0064 -3.2242 18 6 -4.4217 -9.1868 -2.3229 19 7 -5.0229 -8.0944 -1.9017 20 14 -5.2768 -10.8408 -2.1724 21 1 -4.9372 -11.4565 -0.8643 22 1 -6.7465 -10.6482 -2.2621 23 1 -4.8265 -11.7327 -3.2710 24 1 -0.3633 0.0031 1.0277 25 1 -0.3632 0.8885 -0.5165 26 1 -0.3634 -0.8914 -0.5111 27 1 4.4099 1.3408 -0.0123 28 1 4.4776 -1.2834 -0.0088 29 1 0.9326 -2.5762 0.6023 30 1 2.6186 -3.1231 0.4394 31 1 1.0082 -4.8074 -0.9105 32 1 0.0942 -3.9920 -3.4553 33 1 1.7826 -4.5328 -3.6126 34 1 1.0189 -6.8163 -2.5483 35 1 -1.3324 -5.6211 -4.0496 36 1 -1.2129 -8.1925 -4.5987 37 1 -0.4936 -8.4177 -2.9862 38 1 -2.9685 -7.0923 -2.6793 39 1 -5.9099 -8.1482 -1.5127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321402430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:41 Heat of formation + Delta-G solvation = 31.077452 kcal Electronic energy + Delta-G solvation = -20181.870162 eV Core-core repulsion = 16932.466280 eV Total energy + Delta-G solvation = -3249.403882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.10168 -40.70217 -37.71493 -36.28821 -35.02204 -34.42384 -32.64654 -32.46748 -29.77069 -28.15811 -27.52802 -25.75072 -23.67695 -22.40868 -22.05944 -21.07747 -20.49107 -19.14994 -18.57728 -18.19869 -16.86875 -16.79294 -16.58776 -16.19185 -15.64884 -15.34279 -15.22179 -15.08865 -14.71607 -14.62479 -14.32461 -13.93342 -13.53531 -13.50024 -13.43369 -13.24380 -13.15463 -12.86867 -12.74896 -12.19863 -12.00029 -11.79880 -11.55556 -11.04370 -10.98707 -10.61622 -10.36631 -10.01799 -9.27016 -9.01649 -7.96657 -5.26314 0.87948 1.14150 1.41387 1.48819 1.50030 1.58679 1.72534 2.18082 2.36726 2.56796 3.37483 3.58410 3.61937 3.71870 3.76041 3.90656 4.08403 4.13148 4.23482 4.42432 4.44514 4.55878 4.65121 4.66460 4.69760 4.83230 4.92371 4.99453 5.00657 5.24132 5.30176 5.47690 5.65031 5.82648 5.83975 6.15595 6.25750 6.43872 7.07483 7.14279 7.32078 8.06133 8.29811 9.26733 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030210 B = 0.002519 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.630843 B =11114.523899 C =11664.143763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.200 3.800 3 N -0.535 5.535 4 C -0.057 4.057 5 C -0.047 4.047 6 N -0.445 5.445 7 C 0.085 3.915 8 C 0.495 3.505 9 O -0.576 6.576 10 N -0.706 5.706 11 C 0.159 3.841 12 C -0.160 4.160 13 C -0.132 4.132 14 C 0.173 3.827 15 N -0.744 5.744 16 C -0.249 4.249 17 H 0.078 0.922 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.975 3.025 21 H -0.284 1.284 22 H -0.296 1.296 23 H -0.270 1.270 24 H 0.102 0.898 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.184 0.816 28 H 0.205 0.795 29 H 0.151 0.849 30 H 0.165 0.835 31 H 0.420 0.580 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.028 0.972 37 H 0.035 0.965 38 H 0.375 0.625 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.794 10.096 6.343 21.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.063 4.063 3 N -0.256 5.256 4 C -0.204 4.204 5 C -0.179 4.179 6 N -0.128 5.128 7 C -0.040 4.040 8 C 0.280 3.720 9 O -0.455 6.455 10 N -0.359 5.359 11 C 0.036 3.964 12 C -0.179 4.179 13 C -0.151 4.151 14 C 0.047 3.953 15 N -0.387 5.387 16 C -0.380 4.380 17 H 0.096 0.904 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.803 3.197 21 H -0.211 1.211 22 H -0.223 1.223 23 H -0.194 1.194 24 H 0.120 0.880 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.201 0.799 28 H 0.222 0.778 29 H 0.169 0.831 30 H 0.182 0.818 31 H 0.258 0.742 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.152 0.848 35 H 0.123 0.877 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.206 0.794 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 17.594 11.107 5.651 21.560 hybrid contribution -0.590 -1.472 0.133 1.592 sum 17.004 9.634 5.784 20.382 Atomic orbital electron populations 1.20261 0.83703 1.04104 1.04577 1.23719 0.96698 0.81557 1.04286 1.70188 1.03640 1.29717 1.22017 1.22673 0.94696 0.94121 1.08878 1.23169 0.87573 0.96900 1.10281 1.45037 1.06713 1.06710 1.54342 1.22008 1.07153 0.80760 0.94119 1.21263 0.76762 0.81971 0.91984 1.90793 1.53277 1.54132 1.47268 1.45844 1.67069 1.12936 1.10083 1.20201 1.00722 0.92108 0.83403 1.22758 0.97302 0.96292 1.01542 1.23008 0.96295 0.97100 0.98712 1.19917 0.86246 0.92962 0.96172 1.42529 1.15742 1.06567 1.73868 1.19661 0.98134 0.87590 1.32628 0.90422 1.25595 0.98406 1.00606 1.02130 1.69811 1.15397 1.28377 1.48345 0.85126 0.77155 0.79307 0.78073 1.21117 1.22286 1.19448 0.87986 0.89737 0.90705 0.79925 0.77790 0.83091 0.81785 0.74199 0.92446 0.90444 0.84826 0.87651 0.95423 0.94675 0.79359 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.04 71.24 0.72 -0.50 16 2 C 0.20 4.72 7.88 138.13 1.09 5.81 16 3 N -0.54 -14.97 11.25 -188.13 -2.12 -17.09 16 4 C -0.06 -1.31 11.87 83.52 0.99 -0.31 16 5 C -0.05 -0.86 11.58 83.08 0.96 0.10 16 6 N -0.45 -8.35 2.24 -518.36 -1.16 -9.51 16 7 C 0.09 0.92 6.16 85.64 0.53 1.45 16 8 C 0.49 9.15 7.90 87.66 0.69 9.84 16 9 O -0.58 -16.98 16.42 -3.04 -0.05 -17.02 16 10 N -0.71 -11.00 5.55 -466.79 -2.59 -13.59 16 11 C 0.16 3.21 6.11 85.63 0.52 3.73 16 12 C -0.16 -3.46 9.24 25.64 0.24 -3.22 16 13 C -0.13 -3.81 9.24 25.64 0.24 -3.57 16 14 C 0.17 6.41 6.70 85.63 0.57 6.98 16 15 N -0.74 -36.53 5.59 -347.16 -1.94 -38.48 16 16 C -0.25 -13.49 9.99 84.03 0.84 -12.65 16 17 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 18 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 19 N -0.97 -57.93 13.06 21.65 0.28 -57.64 16 20 Si 0.97 44.76 29.55 68.60 2.03 46.78 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 24 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.07 1.25 7.84 -2.39 -0.02 1.23 16 27 H 0.18 3.20 8.06 -2.91 -0.02 3.18 16 28 H 0.21 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.15 0.86 7.94 -2.38 -0.02 0.84 16 30 H 0.16 0.47 8.13 -2.39 -0.02 0.45 16 31 H 0.42 4.15 8.46 -92.71 -0.78 3.37 16 32 H 0.06 1.37 7.79 -2.39 -0.02 1.35 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.13 2.48 7.84 -2.91 -0.02 2.46 16 35 H 0.11 3.13 7.84 -2.91 -0.02 3.11 16 36 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.04 1.25 7.79 -2.38 -0.02 1.23 16 38 H 0.37 19.60 7.66 -92.71 -0.71 18.89 16 39 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -79.13 343.31 1.87 -77.26 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.43 Total: 25.38 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 7.85 Total: 3.92 kcal Atomic # 7 Polarization: -128.78 SS G_CDS: -7.53 Total: -136.31 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.05 Total: -17.02 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -79.13 1.87 -77.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321402430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.333 kcal (2) G-P(sol) polarization free energy of solvation -79.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds