Wall clock time and date at job start Tue Mar 31 2020 01:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99891 * 2 1 4 4 N 1.46896 * 109.47109 * 125.21298 * 3 2 1 5 5 C 1.46895 * 111.00265 * 302.49811 * 4 3 2 6 6 C 1.50702 * 109.47107 * 288.21723 * 5 4 3 7 7 H 1.08003 * 119.99776 * 354.91462 * 6 5 4 8 8 C 1.37875 * 120.00070 * 174.91305 * 6 5 4 9 9 N 1.31508 * 120.00037 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99671 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47453 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47499 * 120.00162 * 10 8 6 13 13 H 1.48508 * 109.46942 * 239.99723 * 10 8 6 14 14 C 1.46908 * 110.99481 * 66.44998 * 4 3 2 15 15 C 1.50701 * 109.47275 * 66.04889 * 14 4 3 16 16 N 1.30951 * 126.49074 * 90.01840 * 15 14 4 17 17 N 1.29019 * 109.76408 * 179.97438 * 16 15 14 18 18 C 1.29520 * 109.45630 * 359.97438 * 17 16 15 19 19 N 1.34317 * 126.48409 * 269.71356 * 15 14 4 20 20 C 1.46325 * 130.08772 * 0.14444 * 19 15 14 21 21 C 1.53527 * 108.05040 * 163.72154 * 20 19 15 22 22 O 1.43022 * 109.75777 * 48.21024 * 21 20 19 23 23 C 1.43723 * 113.90857 * 289.69940 * 22 21 20 24 24 H 1.07993 * 120.00279 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.99435 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00446 * 180.02562 * 2 1 3 27 27 H 1.09009 * 109.47218 * 5.21836 * 3 2 1 28 28 H 1.09001 * 109.47735 * 245.21670 * 3 2 1 29 29 H 1.08996 * 109.47498 * 48.21754 * 5 4 3 30 30 H 1.09001 * 109.47109 * 168.22191 * 5 4 3 31 31 H 0.96998 * 119.99751 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.46835 * 186.04314 * 14 4 3 33 33 H 1.08991 * 109.47291 * 306.04386 * 14 4 3 34 34 H 1.09003 * 109.74869 * 283.36475 * 20 19 15 35 35 H 1.09003 * 109.74429 * 44.08639 * 20 19 15 36 36 H 1.09004 * 109.41907 * 168.29553 * 21 20 19 37 37 H 1.08996 * 109.42185 * 288.17688 * 21 20 19 38 38 H 1.08996 * 110.37844 * 290.05873 * 23 22 21 39 39 H 1.08999 * 109.30739 * 169.12485 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9999 1.3299 1.1315 5 6 2.2925 1.1388 2.4047 6 6 1.4991 2.3783 2.7294 7 1 1.5826 3.2528 2.1012 8 6 0.6669 2.3958 3.8285 9 7 0.5657 1.3311 4.5938 10 14 -0.3169 3.9320 4.2306 11 1 -0.0271 4.9835 3.2228 12 1 -1.7667 3.6112 4.2090 13 1 0.0613 4.4229 5.5802 14 6 4.0580 0.3250 0.9612 15 6 4.9154 0.6940 -0.2219 16 7 5.9900 1.4421 -0.2018 17 7 6.4706 1.5475 -1.3944 18 6 5.7302 0.8768 -2.2188 19 7 4.7253 0.3130 -1.4958 20 6 3.6809 -0.5277 -2.0820 21 6 3.6932 -0.3111 -3.6019 22 8 5.0328 -0.4090 -4.0933 23 6 5.8763 0.6890 -3.7079 24 1 -0.5400 0.9352 0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3588 2.1315 0.0935 28 1 2.6183 1.4045 -0.9330 29 1 1.6176 0.2871 2.3211 30 1 3.0162 0.9525 3.1981 31 1 -0.0201 1.3434 5.3668 32 1 4.6741 0.2904 1.8597 33 1 3.6068 -0.6526 0.7922 34 1 3.8820 -1.5752 -1.8576 35 1 2.7093 -0.2437 -1.6775 36 1 3.0750 -1.0703 -4.0811 37 1 3.2955 0.6776 -3.8304 38 1 5.5748 1.5993 -4.2261 39 1 6.9118 0.4505 -3.9506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327730081.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:10 Heat of formation + Delta-G solvation = 79.032496 kcal Electronic energy + Delta-G solvation = -22379.910423 eV Core-core repulsion = 19132.586028 eV Total energy + Delta-G solvation = -3247.324395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -43.26549 -38.83202 -37.77716 -34.72588 -33.03413 -32.68738 -31.44217 -30.32692 -27.90943 -26.84386 -26.06433 -24.25783 -24.13613 -21.51154 -20.88181 -20.20110 -19.21626 -17.62019 -17.11866 -16.39059 -16.03025 -15.74687 -15.47810 -15.22872 -14.66722 -14.61654 -14.20176 -13.92587 -13.82962 -13.25095 -12.64819 -12.37659 -12.22615 -11.81406 -11.67310 -11.36339 -11.28042 -11.06618 -10.96869 -10.71628 -10.60869 -10.46686 -10.23340 -10.11982 -10.00601 -9.38458 -9.00772 -8.89725 -8.47294 -7.47489 -6.07385 -4.08299 1.84276 2.35092 2.58092 2.97055 3.27765 3.28396 3.36207 3.41074 3.93564 4.08660 4.35801 4.44654 4.56041 4.74666 4.89978 4.93837 5.01107 5.11041 5.19073 5.23377 5.24919 5.28939 5.47275 5.70008 5.73067 5.90409 6.04313 6.17546 6.22569 6.41013 6.43023 6.87108 6.89062 7.04924 7.09154 7.24457 7.70991 7.91099 8.03497 8.40532 8.87311 8.98928 9.55882 11.03189 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026541 B = 0.004811 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.729274 B = 5819.036346 C = 6322.411138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.199 4.199 3 C 0.085 3.915 4 N -0.519 5.519 5 C 0.192 3.808 6 C -0.503 4.503 7 H 0.063 0.937 8 C 0.058 3.942 9 N -0.897 5.897 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.283 1.283 14 C 0.133 3.867 15 C 0.220 3.780 16 N -0.286 5.286 17 N -0.278 5.278 18 C 0.116 3.884 19 N -0.467 5.467 20 C 0.054 3.946 21 C 0.048 3.952 22 O -0.372 6.372 23 C 0.154 3.846 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.010 0.990 30 H 0.029 0.971 31 H 0.261 0.739 32 H 0.107 0.893 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 -6.565 -17.030 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.219 4.219 3 C -0.043 4.043 4 N -0.243 5.243 5 C 0.068 3.932 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.143 4.143 9 N -0.537 5.537 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.210 1.210 14 C 0.003 3.997 15 C -0.048 4.048 16 N -0.126 5.126 17 N -0.119 5.119 18 C -0.152 4.152 19 N -0.160 5.160 20 C -0.070 4.070 21 C -0.029 4.029 22 O -0.289 6.289 23 C 0.075 3.925 24 H 0.118 0.882 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.028 0.972 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.384 -5.454 -16.412 17.842 hybrid contribution -2.171 -0.724 0.210 2.298 sum 2.213 -6.177 -16.203 17.481 Atomic orbital electron populations 1.23773 0.95870 1.01559 0.98570 1.23499 0.96989 0.99386 1.02019 1.21391 0.94626 0.94943 0.93317 1.62415 1.11842 1.45337 1.04661 1.19841 0.92657 0.97407 0.83308 1.21100 1.23693 0.98789 1.10572 0.91910 1.24935 0.96942 0.96297 0.96162 1.69953 1.38827 1.28389 1.16525 0.86479 0.79528 0.83232 0.78425 1.19674 1.21168 1.20957 1.20490 0.92961 0.94091 0.92187 1.24829 0.97277 0.97105 0.85564 1.74645 1.08459 1.16511 1.12971 1.73928 1.23286 1.18398 0.96240 1.25259 0.90770 1.00697 0.98453 1.45933 1.23148 1.39040 1.07907 1.23132 0.92595 0.95778 0.95448 1.23017 0.84771 1.04021 0.91113 1.88215 1.21459 1.45247 1.73930 1.21221 0.97076 0.90928 0.83249 0.88181 0.89254 0.88559 0.89176 0.92954 0.97195 0.95326 0.92977 0.87484 0.93626 0.88615 0.86135 0.86030 0.91286 0.89360 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 14.32 29.01 0.42 -1.99 16 2 C -0.20 -3.07 5.44 -36.03 -0.20 -3.27 16 3 C 0.09 1.51 5.14 -4.98 -0.03 1.48 16 4 N -0.52 -10.68 4.65 -238.96 -1.11 -11.79 16 5 C 0.19 4.70 4.57 -4.98 -0.02 4.68 16 6 C -0.50 -13.61 8.56 -34.44 -0.29 -13.91 16 7 H 0.06 1.73 7.65 -52.48 -0.40 1.33 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -25.76 13.29 55.43 0.74 -25.02 16 10 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 14 C 0.13 2.36 5.26 -4.97 -0.03 2.34 16 15 C 0.22 3.85 6.70 -155.69 -1.04 2.81 16 16 N -0.29 -5.70 12.24 32.65 0.40 -5.30 16 17 N -0.28 -5.04 12.20 32.77 0.40 -4.64 16 18 C 0.12 1.69 7.90 -155.27 -1.23 0.46 16 19 N -0.47 -6.71 2.69 -110.75 -0.30 -7.01 16 20 C 0.05 0.55 6.59 -3.86 -0.03 0.52 16 21 C 0.05 0.38 6.81 37.43 0.26 0.64 16 22 O -0.37 -3.60 10.80 -35.23 -0.38 -3.99 16 23 C 0.15 1.51 7.29 36.05 0.26 1.77 16 24 H 0.10 1.57 7.84 -52.49 -0.41 1.16 16 25 H 0.09 1.18 8.06 -52.48 -0.42 0.75 16 26 H 0.10 1.34 6.40 -52.49 -0.34 1.00 16 27 H 0.09 1.77 7.09 -51.92 -0.37 1.40 16 28 H 0.05 0.84 5.06 -51.93 -0.26 0.58 16 29 H 0.01 0.26 6.62 -51.93 -0.34 -0.08 16 30 H 0.03 0.76 7.81 -51.93 -0.41 0.35 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.11 1.95 7.86 -51.93 -0.41 1.54 16 33 H 0.05 0.72 6.39 -51.93 -0.33 0.39 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.12 1.26 3.41 -51.93 -0.18 1.08 16 36 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 313.92 15.07 4.73 4.73 Total: -1.00 -32.79 313.92 -7.68 -40.48 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.12 Total: -0.73 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.02 Total: -2.96 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.13 Total: -53.77 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: -0.38 Total: -3.99 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.79 -7.68 -40.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327730081.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.510 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds