Wall clock time and date at job start Tue Mar 31 2020 01:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99891 * 2 1 4 4 N 1.46896 * 109.47109 * 125.21298 * 3 2 1 5 5 C 1.46895 * 111.00265 * 302.49811 * 4 3 2 6 6 C 1.50702 * 109.47107 * 288.21723 * 5 4 3 7 7 H 1.08003 * 119.99776 * 354.91462 * 6 5 4 8 8 C 1.37875 * 120.00070 * 174.91305 * 6 5 4 9 9 N 1.31508 * 120.00037 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99671 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47453 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47499 * 120.00162 * 10 8 6 13 13 H 1.48508 * 109.46942 * 239.99723 * 10 8 6 14 14 C 1.46908 * 110.99481 * 66.44998 * 4 3 2 15 15 C 1.50701 * 109.47275 * 66.04889 * 14 4 3 16 16 N 1.30951 * 126.49074 * 90.01840 * 15 14 4 17 17 N 1.29019 * 109.76408 * 179.97438 * 16 15 14 18 18 C 1.29520 * 109.45630 * 359.97438 * 17 16 15 19 19 N 1.34317 * 126.48409 * 269.71356 * 15 14 4 20 20 C 1.46325 * 130.08772 * 0.14444 * 19 15 14 21 21 C 1.53527 * 108.05040 * 163.72154 * 20 19 15 22 22 O 1.43022 * 109.75777 * 48.21024 * 21 20 19 23 23 C 1.43723 * 113.90857 * 289.69940 * 22 21 20 24 24 H 1.07993 * 120.00279 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.99435 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00446 * 180.02562 * 2 1 3 27 27 H 1.09009 * 109.47218 * 5.21836 * 3 2 1 28 28 H 1.09001 * 109.47735 * 245.21670 * 3 2 1 29 29 H 1.08996 * 109.47498 * 48.21754 * 5 4 3 30 30 H 1.09001 * 109.47109 * 168.22191 * 5 4 3 31 31 H 0.96998 * 119.99751 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.46835 * 186.04314 * 14 4 3 33 33 H 1.08991 * 109.47291 * 306.04386 * 14 4 3 34 34 H 1.09003 * 109.74869 * 283.36475 * 20 19 15 35 35 H 1.09003 * 109.74429 * 44.08639 * 20 19 15 36 36 H 1.09004 * 109.41907 * 168.29553 * 21 20 19 37 37 H 1.08996 * 109.42185 * 288.17688 * 21 20 19 38 38 H 1.08996 * 110.37844 * 290.05873 * 23 22 21 39 39 H 1.08999 * 109.30739 * 169.12485 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9999 1.3299 1.1315 5 6 2.2925 1.1388 2.4047 6 6 1.4991 2.3783 2.7294 7 1 1.5826 3.2528 2.1012 8 6 0.6669 2.3958 3.8285 9 7 0.5657 1.3311 4.5938 10 14 -0.3169 3.9320 4.2306 11 1 -0.0271 4.9835 3.2228 12 1 -1.7667 3.6112 4.2090 13 1 0.0613 4.4229 5.5802 14 6 4.0580 0.3250 0.9612 15 6 4.9154 0.6940 -0.2219 16 7 5.9900 1.4421 -0.2018 17 7 6.4706 1.5475 -1.3944 18 6 5.7302 0.8768 -2.2188 19 7 4.7253 0.3130 -1.4958 20 6 3.6809 -0.5277 -2.0820 21 6 3.6932 -0.3111 -3.6019 22 8 5.0328 -0.4090 -4.0933 23 6 5.8763 0.6890 -3.7079 24 1 -0.5400 0.9352 0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3588 2.1315 0.0935 28 1 2.6183 1.4045 -0.9330 29 1 1.6176 0.2871 2.3211 30 1 3.0162 0.9525 3.1981 31 1 -0.0201 1.3434 5.3668 32 1 4.6741 0.2904 1.8597 33 1 3.6068 -0.6526 0.7922 34 1 3.8820 -1.5752 -1.8576 35 1 2.7093 -0.2437 -1.6775 36 1 3.0750 -1.0703 -4.0811 37 1 3.2955 0.6776 -3.8304 38 1 5.5748 1.5993 -4.2261 39 1 6.9118 0.4505 -3.9506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327730081.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:08 Heat of formation + Delta-G solvation = 56.138600 kcal Electronic energy + Delta-G solvation = -22380.903177 eV Core-core repulsion = 19132.586028 eV Total energy + Delta-G solvation = -3248.317149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.46888 -39.62732 -39.30198 -35.82339 -34.81900 -34.19290 -32.66061 -31.36569 -29.54086 -28.21768 -27.20581 -25.88946 -25.13517 -23.16378 -22.12063 -21.24318 -20.57747 -18.58724 -18.33801 -18.18870 -17.15023 -16.98726 -16.50673 -16.36373 -16.16194 -15.96484 -15.55786 -15.36286 -14.90193 -14.29458 -14.12158 -13.93032 -13.40684 -13.23383 -13.06418 -12.77227 -12.61654 -12.53491 -12.42629 -12.32930 -12.14809 -12.04644 -11.52368 -11.35726 -11.30275 -11.09550 -10.60631 -10.27308 -10.17742 -9.10142 -8.18312 -6.26347 0.65676 1.30503 1.35327 1.39109 1.42079 1.53469 1.68773 2.40870 2.58711 2.96279 3.14423 3.15960 3.30160 3.45540 3.73740 3.88440 3.92120 4.01139 4.20233 4.23766 4.29315 4.35190 4.47505 4.52872 4.59264 4.69791 4.78305 4.90323 5.01671 5.02962 5.17684 5.27106 5.62735 5.65823 5.68083 5.81948 5.85046 6.05135 6.25680 6.49153 6.87294 7.42233 7.60465 8.91837 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026541 B = 0.004811 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.729274 B = 5819.036346 C = 6322.411138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.203 4.203 3 C 0.092 3.908 4 N -0.537 5.537 5 C 0.211 3.789 6 C -0.516 4.516 7 H 0.052 0.948 8 C 0.012 3.988 9 N -0.928 5.928 10 Si 0.958 3.042 11 H -0.270 1.270 12 H -0.276 1.276 13 H -0.282 1.282 14 C 0.141 3.859 15 C 0.210 3.790 16 N -0.331 5.331 17 N -0.318 5.318 18 C 0.132 3.868 19 N -0.464 5.464 20 C 0.044 3.956 21 C 0.049 3.951 22 O -0.375 6.375 23 C 0.155 3.845 24 H 0.088 0.912 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.000 1.000 30 H 0.000 1.000 31 H 0.264 0.736 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.157 0.843 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -7.351 -19.279 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.222 4.222 3 C -0.036 4.036 4 N -0.261 5.261 5 C 0.085 3.915 6 C -0.554 4.554 7 H 0.070 0.930 8 C -0.186 4.186 9 N -0.568 5.568 10 Si 0.784 3.216 11 H -0.194 1.194 12 H -0.201 1.201 13 H -0.208 1.208 14 C 0.011 3.989 15 C -0.060 4.060 16 N -0.171 5.171 17 N -0.158 5.158 18 C -0.137 4.137 19 N -0.156 5.156 20 C -0.077 4.077 21 C -0.028 4.028 22 O -0.291 6.291 23 C 0.077 3.923 24 H 0.107 0.893 25 H 0.132 0.868 26 H 0.135 0.865 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.017 0.983 30 H 0.018 0.982 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.175 0.825 37 H 0.094 0.906 38 H 0.130 0.870 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.418 -6.251 -18.693 20.004 hybrid contribution -1.859 -0.509 0.821 2.095 sum 1.559 -6.759 -17.872 19.171 Atomic orbital electron populations 1.23937 0.95875 1.02225 0.97526 1.23413 0.97093 0.98855 1.02856 1.21284 0.94022 0.95532 0.92739 1.62198 1.12704 1.47154 1.04053 1.19421 0.91536 0.95962 0.84544 1.21335 1.24153 0.99328 1.10605 0.92983 1.25683 0.97902 0.99082 0.95967 1.70049 1.39603 1.30167 1.16998 0.85505 0.78422 0.79725 0.77987 1.19440 1.20108 1.20779 1.20342 0.91997 0.94393 0.92197 1.24523 0.97034 0.97683 0.86721 1.74528 1.09975 1.18042 1.14577 1.73821 1.25002 1.20709 0.96289 1.26166 0.89295 0.98202 1.00079 1.46125 1.23812 1.38897 1.06779 1.23527 0.91280 0.95916 0.96995 1.23258 0.84450 1.05776 0.89327 1.88229 1.22161 1.45153 1.73564 1.21578 0.98520 0.92262 0.79978 0.89346 0.86820 0.86497 0.91713 0.91311 0.98269 0.98178 0.92750 0.88938 0.91273 0.86989 0.86221 0.82511 0.90643 0.86957 0.83669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 14.32 67.78 0.97 -3.53 16 2 C -0.20 -5.94 5.44 25.65 0.14 -5.80 16 3 C 0.09 3.22 5.14 85.56 0.44 3.66 16 4 N -0.54 -22.51 4.65 -909.94 -4.23 -26.74 16 5 C 0.21 10.60 4.57 85.56 0.39 10.99 16 6 C -0.52 -28.48 8.56 25.60 0.22 -28.27 16 7 H 0.05 2.93 7.65 -2.91 -0.02 2.90 16 8 C 0.01 0.68 5.46 84.66 0.46 1.14 16 9 N -0.93 -53.75 13.29 21.45 0.28 -53.46 16 10 Si 0.96 43.81 29.54 68.60 2.03 45.83 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 14 C 0.14 5.05 5.26 85.56 0.45 5.50 16 15 C 0.21 7.34 6.70 138.23 0.93 8.26 16 16 N -0.33 -13.50 12.24 -50.63 -0.62 -14.12 16 17 N -0.32 -11.55 12.20 -50.25 -0.61 -12.16 16 18 C 0.13 3.64 7.90 138.13 1.09 4.73 16 19 N -0.46 -12.60 2.69 -504.31 -1.36 -13.96 16 20 C 0.04 0.77 6.59 86.59 0.57 1.34 16 21 C 0.05 0.58 6.81 72.16 0.49 1.07 16 22 O -0.37 -5.82 10.80 -148.98 -1.61 -7.43 16 23 C 0.16 2.57 7.29 71.27 0.52 3.09 16 24 H 0.09 2.72 7.84 -2.91 -0.02 2.70 16 25 H 0.11 2.69 8.06 -2.91 -0.02 2.66 16 26 H 0.12 2.95 6.40 -2.91 -0.02 2.93 16 27 H 0.06 2.58 7.09 -2.38 -0.02 2.56 16 28 H 0.07 2.15 5.06 -2.39 -0.01 2.14 16 29 H 0.00 -0.02 6.62 -2.39 -0.02 -0.04 16 30 H 0.00 0.01 7.81 -2.39 -0.02 -0.01 16 31 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 32 H 0.09 3.53 7.86 -2.39 -0.02 3.51 16 33 H 0.07 2.11 6.39 -2.39 -0.02 2.10 16 34 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.12 2.15 3.41 -2.39 -0.01 2.14 16 36 H 0.16 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 38 H 0.11 1.39 8.14 -2.39 -0.02 1.38 16 39 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -72.61 313.92 1.61 -71.00 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.06 Total: 8.84 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 6.67 Total: 2.19 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -6.54 Total: -120.44 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -1.61 Total: -7.43 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -72.61 1.61 -71.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327730081.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.142 kcal (2) G-P(sol) polarization free energy of solvation -72.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds