Wall clock time and date at job start Mon Mar 30 2020 23:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29952 * 126.28580 * 2 1 4 4 O 1.21302 * 110.24653 * 179.72359 * 3 2 1 5 5 C 1.33641 * 109.81695 * 0.47274 * 4 3 2 6 6 C 1.50695 * 126.55305 * 179.79812 * 5 4 3 7 7 C 1.52994 * 109.47264 * 269.68623 * 6 5 4 8 8 C 1.53002 * 109.47399 * 180.02562 * 7 6 5 9 9 N 1.46901 * 109.47515 * 180.02562 * 8 7 6 10 10 C 1.46895 * 111.00119 * 179.97438 * 9 8 7 11 11 C 1.52994 * 109.47270 * 179.97438 * 10 9 8 12 12 H 1.09009 * 109.47154 * 54.99975 * 11 10 9 13 13 C 1.47200 * 109.47451 * 295.00037 * 11 10 9 14 14 N 9.26503 * 124.39694 * 225.70873 * 2 1 3 15 15 C 1.52996 * 109.47347 * 174.99819 * 11 10 9 16 16 C 1.50702 * 109.47159 * 185.00014 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 N 1.31131 * 106.89347 * 359.53770 * 5 4 3 25 25 H 1.08997 * 109.47354 * 269.97206 * 1 2 3 26 26 H 1.08997 * 109.47460 * 29.97675 * 1 2 3 27 27 H 1.09005 * 109.46929 * 149.97664 * 1 2 3 28 28 H 1.09002 * 109.47190 * 149.68472 * 6 5 4 29 29 H 1.08996 * 109.47247 * 29.68663 * 6 5 4 30 30 H 1.09004 * 109.47604 * 60.00066 * 7 6 5 31 31 H 1.08996 * 109.47513 * 299.99983 * 7 6 5 32 32 H 1.09002 * 109.47245 * 59.99731 * 8 7 6 33 33 H 1.08996 * 109.47056 * 300.00006 * 8 7 6 34 34 H 1.00905 * 110.99468 * 303.95636 * 9 8 7 35 35 H 1.08998 * 109.47324 * 59.99878 * 10 9 8 36 36 H 1.09002 * 109.47421 * 300.00055 * 10 9 8 37 37 H 1.09004 * 109.47066 * 65.00217 * 15 11 10 38 38 H 1.08994 * 109.47405 * 305.00047 * 15 11 10 39 39 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7124 0.0055 5 6 3.5299 -0.6211 -0.0007 6 6 4.7970 -1.4369 -0.0013 7 6 5.2254 -1.7126 -1.4440 8 6 6.5115 -2.5414 -1.4446 9 7 6.9232 -2.8056 -2.8298 10 6 8.1578 -3.6005 -2.8695 11 6 8.5537 -3.8553 -4.3252 12 1 8.6319 -2.9044 -4.8523 13 6 7.5307 -4.6925 -4.9726 14 7 6.7410 -5.3385 -5.4723 15 6 9.9034 -4.5747 -4.3683 16 6 10.3516 -4.7163 -5.8001 17 1 9.7357 -4.3314 -6.5994 18 6 11.5511 -5.3318 -6.0893 19 7 12.3013 -5.8002 -5.1159 20 14 12.1103 -5.5005 -7.8635 21 1 11.0945 -4.8960 -8.7624 22 1 13.4079 -4.8006 -8.0422 23 1 12.2736 -6.9384 -8.1966 24 7 2.3030 -1.0841 -0.0005 25 1 -0.3634 -0.0005 1.0276 26 1 -0.3634 0.8901 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 4.6209 -2.3820 0.5124 29 1 5.5844 -0.8854 0.5124 30 1 5.4015 -0.7675 -1.9577 31 1 4.4380 -2.2641 -1.9577 32 1 6.3350 -3.4865 -0.9310 33 1 7.2991 -1.9903 -0.9308 34 1 6.1842 -3.2587 -3.3464 35 1 7.9930 -4.5531 -2.3661 36 1 8.9566 -3.0566 -2.3652 37 1 9.8028 -5.5630 -3.9196 38 1 10.6412 -3.9965 -3.8121 39 1 13.1450 -6.2335 -5.3194 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329143109.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:46 Heat of formation + Delta-G solvation = 68.985473 kcal Electronic energy + Delta-G solvation = -19889.659653 eV Core-core repulsion = 16641.899586 eV Total energy + Delta-G solvation = -3247.760067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.87927 -37.78346 -36.54254 -36.07654 -34.64076 -33.59123 -32.32653 -30.96990 -29.49666 -27.47362 -25.59068 -23.86583 -22.74732 -22.20643 -21.64798 -21.30159 -18.39841 -17.69451 -16.77358 -16.63636 -16.16028 -15.50883 -14.97713 -14.74017 -14.34976 -14.29855 -13.97639 -13.42511 -13.29708 -13.14951 -12.84871 -12.69874 -12.49620 -12.30483 -12.11509 -11.88898 -11.61098 -11.50596 -11.33634 -11.26847 -11.10198 -10.99687 -10.75611 -10.53583 -10.28492 -10.16568 -9.57025 -9.23477 -8.47798 -8.41088 -6.11389 -4.14336 0.83161 1.89642 2.48561 3.27556 3.30308 3.35873 3.40562 3.54121 3.59684 3.71489 4.09846 4.40339 4.49564 4.58195 4.76854 4.84166 4.93552 4.97275 5.02749 5.10946 5.25270 5.26844 5.30530 5.46223 5.50086 5.55272 5.66767 5.69173 5.85259 5.89862 6.11372 6.32527 6.51619 7.01971 7.34568 7.41776 7.50813 7.84006 7.86274 8.21332 8.37490 8.90497 9.51279 10.99503 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.041766 B = 0.002291 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.243923 B =12219.187972 C =12476.624850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.166 3.834 3 N -0.388 5.388 4 O 0.077 5.923 5 C 0.191 3.809 6 C -0.027 4.027 7 C -0.117 4.117 8 C 0.060 3.940 9 N -0.693 5.693 10 C 0.068 3.932 11 C 0.006 3.994 12 H 0.111 0.889 13 C 0.241 3.759 14 N -0.476 5.476 15 C 0.032 3.968 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.892 3.108 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.284 1.284 24 N -0.485 5.485 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.080 0.920 34 H 0.339 0.661 35 H 0.036 0.964 36 H 0.093 0.907 37 H 0.024 0.976 38 H 0.040 0.960 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.312 11.437 14.254 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.107 4.107 3 N -0.098 5.098 4 O 0.019 5.981 5 C -0.029 4.029 6 C -0.067 4.067 7 C -0.156 4.156 8 C -0.069 4.069 9 N -0.324 5.324 10 C -0.062 4.062 11 C -0.016 4.016 12 H 0.129 0.871 13 C -0.076 4.076 14 N -0.153 5.153 15 C -0.007 4.007 16 C -0.564 4.564 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.210 1.210 24 N -0.219 5.219 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.099 0.901 34 H 0.156 0.844 35 H 0.054 0.946 36 H 0.111 0.889 37 H 0.043 0.957 38 H 0.059 0.941 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.658 11.488 13.469 25.004 hybrid contribution 0.537 -0.877 -0.579 1.180 sum -17.121 10.611 12.890 23.914 Atomic orbital electron populations 1.20139 0.82980 1.04739 1.04257 1.25931 1.00650 0.83566 1.00511 1.74649 0.89444 1.23954 1.21713 1.85297 1.22296 1.24863 1.65611 1.28872 0.97070 0.82142 0.94845 1.20277 0.87848 0.98238 1.00304 1.21589 0.98031 1.02324 0.93642 1.21893 0.96200 0.98291 0.90554 1.60541 1.07228 1.51946 1.12710 1.22083 0.92175 0.95808 0.96130 1.19339 0.92323 0.97447 0.92472 0.87088 1.29333 0.92503 0.93031 0.92741 1.81041 1.13431 1.11003 1.09871 1.19171 0.87469 0.95741 0.98301 1.21188 1.04795 1.38310 0.92110 0.92440 1.24962 0.96583 0.95216 0.97295 1.69947 1.12843 1.38816 1.31404 0.86531 0.78657 0.77855 0.85009 1.19683 1.20818 1.21008 1.71923 0.99816 1.29404 1.20741 0.89349 0.89497 0.88990 0.87108 0.87502 0.89954 0.91124 0.94794 0.90114 0.84353 0.94591 0.88891 0.95738 0.94146 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 36.00 0.38 -0.02 16 2 C 0.17 1.72 8.22 -156.37 -1.28 0.43 16 3 N -0.39 -4.45 12.16 30.90 0.38 -4.08 16 4 O 0.08 0.81 11.31 18.10 0.20 1.02 16 5 C 0.19 1.77 7.77 -13.05 -0.10 1.66 16 6 C -0.03 -0.16 5.84 -27.89 -0.16 -0.33 16 7 C -0.12 -0.89 5.46 -26.73 -0.15 -1.04 16 8 C 0.06 0.52 5.69 -3.82 -0.02 0.50 16 9 N -0.69 -8.23 6.50 -113.78 -0.74 -8.97 16 10 C 0.07 0.93 5.12 -3.83 -0.02 0.91 16 11 C 0.01 0.11 2.42 -93.41 -0.23 -0.12 16 12 H 0.11 1.90 8.14 -51.92 -0.42 1.47 16 13 C 0.24 4.75 12.98 -20.76 -0.27 4.48 16 14 N -0.48 -10.22 18.54 42.15 0.78 -9.44 16 15 C 0.03 0.72 4.42 -27.88 -0.12 0.59 16 16 C -0.53 -13.84 8.60 -34.44 -0.30 -14.13 16 17 H 0.06 1.51 7.59 -52.49 -0.40 1.12 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -25.26 13.29 55.43 0.74 -24.52 16 20 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 N -0.48 -5.27 11.55 -9.87 -0.11 -5.38 16 25 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.34 4.28 7.81 -39.29 -0.31 3.97 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 344.36 15.07 5.19 5.19 Total: -1.00 -31.83 344.36 -6.72 -38.55 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -5.76 Total: -3.05 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -2.37 Total: -5.47 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 1.04 Total: -52.39 kcal Atomic # 8 Polarization: 0.81 SS G_CDS: 0.20 Total: 1.02 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.83 -6.72 -38.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329143109.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.534 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds