Wall clock time and date at job start Mon Mar 30 2020 23:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29952 * 126.28580 * 2 1 4 4 O 1.21302 * 110.24653 * 179.72359 * 3 2 1 5 5 C 1.33641 * 109.81695 * 0.47274 * 4 3 2 6 6 C 1.50695 * 126.55305 * 179.79812 * 5 4 3 7 7 C 1.52994 * 109.47264 * 269.68623 * 6 5 4 8 8 C 1.53002 * 109.47399 * 180.02562 * 7 6 5 9 9 N 1.46901 * 109.47515 * 180.02562 * 8 7 6 10 10 C 1.46895 * 111.00119 * 179.97438 * 9 8 7 11 11 C 1.52994 * 109.47270 * 179.97438 * 10 9 8 12 12 H 1.09009 * 109.47154 * 54.99975 * 11 10 9 13 13 C 1.47200 * 109.47451 * 295.00037 * 11 10 9 14 14 N 9.26503 * 124.39694 * 225.70873 * 2 1 3 15 15 C 1.52996 * 109.47347 * 174.99819 * 11 10 9 16 16 C 1.50702 * 109.47159 * 185.00014 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 N 1.31131 * 106.89347 * 359.53770 * 5 4 3 25 25 H 1.08997 * 109.47354 * 269.97206 * 1 2 3 26 26 H 1.08997 * 109.47460 * 29.97675 * 1 2 3 27 27 H 1.09005 * 109.46929 * 149.97664 * 1 2 3 28 28 H 1.09002 * 109.47190 * 149.68472 * 6 5 4 29 29 H 1.08996 * 109.47247 * 29.68663 * 6 5 4 30 30 H 1.09004 * 109.47604 * 60.00066 * 7 6 5 31 31 H 1.08996 * 109.47513 * 299.99983 * 7 6 5 32 32 H 1.09002 * 109.47245 * 59.99731 * 8 7 6 33 33 H 1.08996 * 109.47056 * 300.00006 * 8 7 6 34 34 H 1.00905 * 110.99468 * 303.95636 * 9 8 7 35 35 H 1.08998 * 109.47324 * 59.99878 * 10 9 8 36 36 H 1.09002 * 109.47421 * 300.00055 * 10 9 8 37 37 H 1.09004 * 109.47066 * 65.00217 * 15 11 10 38 38 H 1.08994 * 109.47405 * 305.00047 * 15 11 10 39 39 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7124 0.0055 5 6 3.5299 -0.6211 -0.0007 6 6 4.7970 -1.4369 -0.0013 7 6 5.2254 -1.7126 -1.4440 8 6 6.5115 -2.5414 -1.4446 9 7 6.9232 -2.8056 -2.8298 10 6 8.1578 -3.6005 -2.8695 11 6 8.5537 -3.8553 -4.3252 12 1 8.6319 -2.9044 -4.8523 13 6 7.5307 -4.6925 -4.9726 14 7 6.7410 -5.3385 -5.4723 15 6 9.9034 -4.5747 -4.3683 16 6 10.3516 -4.7163 -5.8001 17 1 9.7357 -4.3314 -6.5994 18 6 11.5511 -5.3318 -6.0893 19 7 12.3013 -5.8002 -5.1159 20 14 12.1103 -5.5005 -7.8635 21 1 11.0945 -4.8960 -8.7624 22 1 13.4079 -4.8006 -8.0422 23 1 12.2736 -6.9384 -8.1966 24 7 2.3030 -1.0841 -0.0005 25 1 -0.3634 -0.0005 1.0276 26 1 -0.3634 0.8901 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 4.6209 -2.3820 0.5124 29 1 5.5844 -0.8854 0.5124 30 1 5.4015 -0.7675 -1.9577 31 1 4.4380 -2.2641 -1.9577 32 1 6.3350 -3.4865 -0.9310 33 1 7.2991 -1.9903 -0.9308 34 1 6.1842 -3.2587 -3.3464 35 1 7.9930 -4.5531 -2.3661 36 1 8.9566 -3.0566 -2.3652 37 1 9.8028 -5.5630 -3.9196 38 1 10.6412 -3.9965 -3.8121 39 1 13.1450 -6.2335 -5.3194 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329143109.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:45 Heat of formation + Delta-G solvation = 47.022959 kcal Electronic energy + Delta-G solvation = -19890.612019 eV Core-core repulsion = 16641.899586 eV Total energy + Delta-G solvation = -3248.712433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.62500 -38.98664 -37.44731 -36.99396 -35.83345 -35.15148 -33.63182 -32.12099 -30.12218 -28.78034 -26.84114 -24.70147 -24.00633 -23.54491 -22.66609 -21.97082 -19.16715 -18.52222 -18.41969 -18.21972 -17.09141 -16.66638 -16.16145 -15.86729 -15.38469 -15.00326 -14.82097 -14.50604 -14.48911 -14.26187 -14.00166 -13.80241 -13.58721 -13.41438 -13.28457 -13.08938 -12.95847 -12.65747 -12.50568 -12.33917 -12.29724 -12.22621 -12.07042 -11.96519 -11.63488 -11.36922 -11.12610 -10.86548 -10.54250 -9.33486 -8.18720 -6.26253 0.11113 1.16697 1.39512 1.42800 1.52909 1.83362 1.96289 1.98303 2.42238 2.68343 3.06426 3.16667 3.23524 3.28221 3.86999 4.03415 4.19288 4.22293 4.31244 4.46335 4.51997 4.54761 4.55183 4.72180 4.74366 4.76668 4.90585 4.91795 4.99668 5.06721 5.08267 5.22508 5.29529 5.50023 5.65836 5.81425 6.07759 6.24005 6.37417 6.77347 6.89341 7.13629 7.42164 8.92209 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.041766 B = 0.002291 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.243923 B =12219.187972 C =12476.624850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.159 3.841 3 N -0.414 5.414 4 O 0.067 5.933 5 C 0.197 3.803 6 C -0.021 4.021 7 C -0.107 4.107 8 C 0.060 3.940 9 N -0.698 5.698 10 C 0.079 3.921 11 C 0.017 3.983 12 H 0.122 0.878 13 C 0.251 3.749 14 N -0.508 5.508 15 C 0.037 3.963 16 C -0.538 4.538 17 H 0.052 0.948 18 C 0.010 3.990 19 N -0.922 5.922 20 Si 0.947 3.053 21 H -0.271 1.271 22 H -0.273 1.273 23 H -0.286 1.286 24 N -0.511 5.511 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.099 0.901 34 H 0.333 0.667 35 H 0.035 0.965 36 H 0.110 0.890 37 H 0.001 0.999 38 H 0.039 0.961 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.538 12.152 14.878 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 N -0.126 5.126 4 O 0.012 5.988 5 C -0.023 4.023 6 C -0.060 4.060 7 C -0.147 4.147 8 C -0.068 4.068 9 N -0.328 5.328 10 C -0.051 4.051 11 C -0.005 4.005 12 H 0.140 0.860 13 C -0.065 4.065 14 N -0.185 5.185 15 C -0.001 4.001 16 C -0.576 4.576 17 H 0.071 0.929 18 C -0.189 4.189 19 N -0.562 5.562 20 Si 0.774 3.226 21 H -0.195 1.195 22 H -0.198 1.198 23 H -0.212 1.212 24 N -0.245 5.245 25 H 0.122 0.878 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.142 0.858 29 H 0.153 0.847 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.117 0.883 34 H 0.150 0.850 35 H 0.053 0.947 36 H 0.128 0.872 37 H 0.020 0.980 38 H 0.057 0.943 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.878 12.212 14.098 25.837 hybrid contribution 0.590 -1.106 -0.762 1.467 sum -17.288 11.106 13.336 24.496 Atomic orbital electron populations 1.20329 0.80725 1.05570 1.05525 1.26626 1.02147 0.83198 0.99418 1.74634 0.89903 1.24810 1.23235 1.85259 1.22091 1.25458 1.65978 1.29466 0.97690 0.81890 0.93291 1.20438 0.87240 0.98801 0.99555 1.21448 0.97147 1.01588 0.94474 1.21990 0.97044 0.99046 0.88770 1.60534 1.06429 1.51088 1.14789 1.21924 0.93670 0.96488 0.92995 1.19274 0.89323 0.96574 0.95330 0.86023 1.29732 0.92253 0.92521 0.91954 1.81042 1.14582 1.11866 1.11046 1.18998 0.90014 0.95064 0.96055 1.21603 1.04619 1.37542 0.93869 0.92931 1.25705 0.97057 0.95339 1.00754 1.70032 1.13314 1.39831 1.33051 0.85657 0.78503 0.77593 0.80884 1.19519 1.19819 1.21174 1.71949 1.00646 1.29984 1.21940 0.87763 0.88540 0.88229 0.85783 0.84672 0.90528 0.92578 0.93985 0.88321 0.85025 0.94687 0.87169 0.98045 0.94273 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.73 10.51 71.23 0.75 0.01 16 2 C 0.16 3.18 8.22 138.46 1.14 4.32 16 3 N -0.41 -9.33 12.16 -60.30 -0.73 -10.07 16 4 O 0.07 1.37 11.31 74.85 0.85 2.22 16 5 C 0.20 3.39 7.77 88.38 0.69 4.08 16 6 C -0.02 -0.21 5.84 29.84 0.17 -0.03 16 7 C -0.11 -1.43 5.46 30.59 0.17 -1.26 16 8 C 0.06 0.87 5.69 86.30 0.49 1.36 16 9 N -0.70 -15.10 6.50 -513.90 -3.34 -18.43 16 10 C 0.08 2.01 5.12 86.30 0.44 2.45 16 11 C 0.02 0.57 2.42 -12.60 -0.03 0.54 16 12 H 0.12 3.95 8.14 -2.38 -0.02 3.93 16 13 C 0.25 9.77 12.98 89.44 1.16 10.93 16 14 N -0.51 -21.61 18.54 20.01 0.37 -21.24 16 15 C 0.04 1.68 4.42 29.85 0.13 1.81 16 16 C -0.54 -28.16 8.60 25.60 0.22 -27.94 16 17 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16 18 C 0.01 0.56 5.46 84.66 0.46 1.02 16 19 N -0.92 -52.30 13.29 21.45 0.28 -52.02 16 20 Si 0.95 43.21 29.54 68.60 2.03 45.24 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 24 N -0.51 -10.69 11.55 -303.19 -3.50 -14.19 16 25 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.04 0.57 8.14 -2.39 -0.02 0.56 16 33 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.33 7.93 7.81 -89.69 -0.70 7.23 16 35 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.11 2.45 8.14 -2.39 -0.02 2.44 16 37 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 Total: -1.00 -68.07 344.36 2.10 -65.97 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 0.36 Total: 5.23 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 5.79 Total: -2.70 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -6.92 Total: -115.95 kcal Atomic # 8 Polarization: 1.37 SS G_CDS: 0.85 Total: 2.22 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -68.07 2.10 -65.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329143109.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.992 kcal (2) G-P(sol) polarization free energy of solvation -68.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds