Wall clock time and date at job start Tue Mar 31 2020 00:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50699 * 120.00072 * 2 1 4 4 C 1.52997 * 109.47191 * 125.00236 * 3 2 1 5 5 N 1.46500 * 109.47370 * 180.02562 * 4 3 2 6 6 C 1.35313 * 125.87403 * 124.99560 * 5 4 3 7 7 C 1.35352 * 106.17592 * 179.97438 * 6 5 4 8 8 C 1.50695 * 126.74950 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47114 * 95.00253 * 8 7 6 10 10 C 1.47964 * 110.99873 * 169.99772 * 9 8 7 11 11 C 1.53936 * 86.17896 * 222.41598 * 10 9 8 12 12 O 1.42894 * 113.73695 * 269.25386 * 11 10 9 13 13 C 1.50710 * 113.72850 * 138.07690 * 11 10 9 14 14 H 1.07993 * 120.00160 * 6.89305 * 13 11 10 15 15 C 1.37874 * 119.99500 * 186.88767 * 13 11 10 16 16 N 1.31522 * 119.99594 * 178.34163 * 15 13 11 17 17 Si 1.86798 * 120.00325 * 358.34373 * 15 13 11 18 18 H 1.48495 * 109.47265 * 269.99805 * 17 15 13 19 19 H 1.48505 * 109.47143 * 29.99904 * 17 15 13 20 20 H 1.48499 * 109.47179 * 149.99934 * 17 15 13 21 21 C 1.48192 * 111.06814 * 70.56745 * 9 8 7 22 22 N 1.33772 * 106.49388 * 0.26368 * 7 6 5 23 23 N 1.28632 * 108.89099 * 359.56185 * 22 7 6 24 24 H 1.07996 * 120.00393 * 359.97438 * 1 2 3 25 25 H 1.08011 * 119.99995 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99953 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46994 * 4.99825 * 3 2 1 28 28 H 1.09002 * 109.47444 * 245.00165 * 3 2 1 29 29 H 1.08991 * 109.47582 * 59.99838 * 4 3 2 30 30 H 1.09007 * 109.46691 * 299.99834 * 4 3 2 31 31 H 1.07999 * 126.90925 * 0.02562 * 6 5 4 32 32 H 1.09003 * 109.47364 * 334.99714 * 8 7 6 33 33 H 1.09004 * 109.47082 * 215.00545 * 8 7 6 34 34 H 1.09002 * 113.75665 * 108.09615 * 10 9 8 35 35 H 1.09000 * 113.75903 * 336.73679 * 10 9 8 36 36 H 0.96694 * 114.00278 * 162.48386 * 12 11 10 37 37 H 0.96996 * 120.00167 * 358.20463 * 16 15 13 38 38 H 1.08996 * 113.75836 * 23.23806 * 21 9 8 39 39 H 1.09005 * 113.81861 * 251.80777 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 7 3.7671 2.6020 1.1820 6 6 3.8385 3.4759 2.2125 7 6 4.6109 4.5016 1.7844 8 6 4.9924 5.7312 2.5676 9 7 6.3022 5.5227 3.1991 10 6 6.8194 6.7832 3.7760 11 6 8.1823 6.3717 3.1904 12 8 8.9867 5.6053 4.0891 13 6 8.9364 7.5094 2.5516 14 1 8.5620 8.5190 2.6339 15 6 10.1043 7.2613 1.8622 16 7 10.7452 8.2496 1.2771 17 14 10.7766 5.5215 1.7593 18 1 11.6915 5.2758 2.9028 19 1 9.6521 4.5526 1.8081 20 1 11.5204 5.3528 0.4851 21 6 7.3860 5.5164 2.1884 22 7 4.9648 4.2115 0.5273 23 7 4.4535 3.0769 0.2020 24 1 -0.5400 0.9352 0.0004 25 1 -0.5401 -0.9354 -0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 3.7399 0.5066 1.0921 30 1 2.4771 1.2356 2.1130 31 1 3.3734 3.3749 3.1820 32 1 4.2436 5.9185 3.3373 33 1 5.0451 6.5880 1.8959 34 1 6.7991 6.8084 4.8656 35 1 6.3985 7.6797 3.3209 36 1 9.7062 5.1231 3.6592 37 1 10.3825 9.1486 1.3084 38 1 7.1311 6.0415 1.2680 39 1 7.8175 4.5311 2.0119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330256276.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:30 Heat of formation + Delta-G solvation = 117.182752 kcal Electronic energy + Delta-G solvation = -21279.018191 eV Core-core repulsion = 18033.348115 eV Total energy + Delta-G solvation = -3245.670076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -43.15432 -39.23990 -36.75229 -34.92403 -33.85382 -32.43427 -31.80435 -29.82576 -28.34006 -25.62021 -25.35021 -24.82962 -22.56250 -21.60170 -20.48767 -20.30805 -18.99339 -17.80944 -17.24424 -16.48561 -15.91873 -15.69987 -15.22535 -14.88114 -14.72368 -14.29879 -14.22758 -13.48257 -13.16898 -13.13877 -12.94096 -12.32907 -12.04363 -11.93782 -11.82210 -11.63283 -11.42787 -11.15730 -10.98879 -10.62494 -10.42037 -10.18536 -10.10281 -9.80778 -9.50241 -9.33213 -9.07284 -8.63390 -8.42485 -8.01386 -6.50243 -4.26141 1.59594 1.76584 2.33001 2.68667 3.28462 3.34351 3.49051 4.14062 4.27178 4.37568 4.41848 4.53208 4.71217 4.74713 4.81473 4.89684 5.06265 5.15648 5.18991 5.39189 5.47406 5.53592 5.60583 5.74257 5.83108 6.01161 6.07466 6.09097 6.20783 6.27267 6.35260 6.50379 6.61074 6.73220 6.96629 7.00271 7.74834 7.80418 8.24601 8.64815 8.71077 8.79969 9.48352 10.84070 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031281 B = 0.003643 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.890340 B = 7683.342710 C = 8016.292428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.156 4.156 3 C -0.107 4.107 4 C 0.123 3.877 5 N -0.298 5.298 6 C -0.041 4.041 7 C -0.001 4.001 8 C 0.101 3.899 9 N -0.477 5.477 10 C 0.025 3.975 11 C 0.200 3.800 12 O -0.556 6.556 13 C -0.606 4.606 14 H 0.066 0.934 15 C 0.035 3.965 16 N -0.900 5.900 17 Si 1.036 2.964 18 H -0.277 1.277 19 H -0.269 1.269 20 H -0.284 1.284 21 C -0.020 4.020 22 N -0.256 5.256 23 N -0.090 5.090 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.188 0.812 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.349 0.651 37 H 0.270 0.730 38 H 0.077 0.923 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.762 -15.370 0.745 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.175 4.175 3 C -0.144 4.144 4 C 0.001 3.999 5 N -0.092 5.092 6 C -0.192 4.192 7 C -0.139 4.139 8 C -0.029 4.029 9 N -0.200 5.200 10 C -0.104 4.104 11 C 0.159 3.841 12 O -0.365 6.365 13 C -0.644 4.644 14 H 0.084 0.916 15 C -0.172 4.172 16 N -0.534 5.534 17 Si 0.866 3.134 18 H -0.204 1.204 19 H -0.195 1.195 20 H -0.211 1.211 21 C -0.149 4.149 22 N -0.123 5.123 23 N -0.069 5.069 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.133 0.867 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.205 0.795 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.199 0.801 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.585 -16.829 -0.461 25.076 hybrid contribution -1.411 1.392 0.716 2.107 sum -19.996 -15.437 0.255 25.262 Atomic orbital electron populations 1.23943 0.95870 1.02227 0.99925 1.22760 0.96013 0.97733 1.00961 1.21023 0.98004 0.96628 0.98789 1.22015 0.94598 0.81865 1.01383 1.47345 1.34294 1.17323 1.10255 1.23318 1.07332 0.92423 0.96095 1.21867 1.00241 0.99099 0.92659 1.20877 0.95219 0.91164 0.95656 1.68691 0.99432 1.30258 1.21658 1.23942 0.94957 0.91042 1.00413 1.20506 0.88160 0.89194 0.86206 1.86433 1.45600 1.66211 1.38261 1.22376 1.11340 0.94171 1.36494 0.91627 1.25776 0.93626 1.05390 0.92364 1.70792 1.39898 1.01626 1.41051 0.84242 0.76722 0.75088 0.77395 1.20394 1.19493 1.21082 1.25067 0.92931 1.00896 0.96018 1.75120 1.18306 1.05992 1.12911 1.78252 1.08591 1.06831 1.13245 0.88430 0.88046 0.86697 0.90628 0.88927 0.88272 0.87700 0.79495 0.89680 0.92441 0.90145 0.90983 0.80110 0.91969 0.90456 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.94 14.32 29.02 0.42 -0.52 16 2 C -0.16 -0.85 9.52 -36.02 -0.34 -1.20 16 3 C -0.11 -0.74 5.78 -27.88 -0.16 -0.91 16 4 C 0.12 0.91 6.44 -4.04 -0.03 0.88 16 5 N -0.30 -3.69 3.44 -61.26 -0.21 -3.90 16 6 C -0.04 -0.52 11.50 -17.05 -0.20 -0.72 16 7 C 0.00 -0.01 6.29 -82.78 -0.52 -0.53 16 8 C 0.10 1.69 5.39 -4.98 -0.03 1.66 16 9 N -0.48 -9.63 6.25 -239.47 -1.50 -11.12 16 10 C 0.02 0.53 7.37 -2.76 -0.02 0.51 16 11 C 0.20 4.98 1.06 -90.83 -0.10 4.88 16 12 O -0.56 -14.01 13.26 -35.23 -0.47 -14.48 16 13 C -0.61 -17.18 9.05 -34.44 -0.31 -17.49 16 14 H 0.07 1.97 8.04 -52.49 -0.42 1.54 16 15 C 0.03 1.01 5.47 -17.82 -0.10 0.91 16 16 N -0.90 -27.63 13.70 55.43 0.76 -26.87 16 17 Si 1.04 25.02 24.77 -169.99 -4.21 20.81 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.27 -6.05 4.71 56.52 0.27 -5.79 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 C -0.02 -0.47 5.69 -2.63 -0.01 -0.48 16 22 N -0.26 -4.81 12.36 33.29 0.41 -4.40 16 23 N -0.09 -1.47 12.92 60.35 0.78 -0.69 16 24 H 0.10 0.49 7.84 -52.49 -0.41 0.08 16 25 H 0.10 0.41 8.06 -52.48 -0.42 -0.01 16 26 H 0.12 0.51 8.06 -52.49 -0.42 0.08 16 27 H 0.08 0.56 7.79 -51.93 -0.40 0.15 16 28 H 0.09 0.79 8.12 -51.93 -0.42 0.36 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.50 8.07 -51.92 -0.42 0.08 16 31 H 0.19 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.01 7.70 -51.93 -0.40 0.61 16 34 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 35 H 0.07 1.46 7.74 -51.93 -0.40 1.06 16 36 H 0.35 8.24 4.33 45.56 0.20 8.43 16 37 H 0.27 8.22 8.71 -40.82 -0.36 7.86 16 38 H 0.08 1.87 7.74 -51.93 -0.40 1.46 16 39 H 0.07 1.70 6.55 -51.93 -0.34 1.36 16 LS Contribution 324.72 15.07 4.89 4.89 Total: -1.00 -34.30 324.72 -6.19 -40.49 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.25 Total: 8.27 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -1.40 Total: -13.00 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.24 Total: -46.99 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.47 Total: -14.48 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -4.21 Total: 20.81 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.30 -6.19 -40.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330256276.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.676 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds