Wall clock time and date at job start Tue Mar 31 2020 00:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50699 * 120.00072 * 2 1 4 4 C 1.52997 * 109.47191 * 125.00236 * 3 2 1 5 5 N 1.46500 * 109.47370 * 180.02562 * 4 3 2 6 6 C 1.35313 * 125.87403 * 124.99560 * 5 4 3 7 7 C 1.35352 * 106.17592 * 179.97438 * 6 5 4 8 8 C 1.50695 * 126.74950 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47114 * 95.00253 * 8 7 6 10 10 C 1.47964 * 110.99873 * 169.99772 * 9 8 7 11 11 C 1.53936 * 86.17896 * 222.41598 * 10 9 8 12 12 O 1.42894 * 113.73695 * 269.25386 * 11 10 9 13 13 C 1.50710 * 113.72850 * 138.07690 * 11 10 9 14 14 H 1.07993 * 120.00160 * 6.89305 * 13 11 10 15 15 C 1.37874 * 119.99500 * 186.88767 * 13 11 10 16 16 N 1.31522 * 119.99594 * 178.34163 * 15 13 11 17 17 Si 1.86798 * 120.00325 * 358.34373 * 15 13 11 18 18 H 1.48495 * 109.47265 * 269.99805 * 17 15 13 19 19 H 1.48505 * 109.47143 * 29.99904 * 17 15 13 20 20 H 1.48499 * 109.47179 * 149.99934 * 17 15 13 21 21 C 1.48192 * 111.06814 * 70.56745 * 9 8 7 22 22 N 1.33772 * 106.49388 * 0.26368 * 7 6 5 23 23 N 1.28632 * 108.89099 * 359.56185 * 22 7 6 24 24 H 1.07996 * 120.00393 * 359.97438 * 1 2 3 25 25 H 1.08011 * 119.99995 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99953 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46994 * 4.99825 * 3 2 1 28 28 H 1.09002 * 109.47444 * 245.00165 * 3 2 1 29 29 H 1.08991 * 109.47582 * 59.99838 * 4 3 2 30 30 H 1.09007 * 109.46691 * 299.99834 * 4 3 2 31 31 H 1.07999 * 126.90925 * 0.02562 * 6 5 4 32 32 H 1.09003 * 109.47364 * 334.99714 * 8 7 6 33 33 H 1.09004 * 109.47082 * 215.00545 * 8 7 6 34 34 H 1.09002 * 113.75665 * 108.09615 * 10 9 8 35 35 H 1.09000 * 113.75903 * 336.73679 * 10 9 8 36 36 H 0.96694 * 114.00278 * 162.48386 * 12 11 10 37 37 H 0.96996 * 120.00167 * 358.20463 * 16 15 13 38 38 H 1.08996 * 113.75836 * 23.23806 * 21 9 8 39 39 H 1.09005 * 113.81861 * 251.80777 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 7 3.7671 2.6020 1.1820 6 6 3.8385 3.4759 2.2125 7 6 4.6109 4.5016 1.7844 8 6 4.9924 5.7312 2.5676 9 7 6.3022 5.5227 3.1991 10 6 6.8194 6.7832 3.7760 11 6 8.1823 6.3717 3.1904 12 8 8.9867 5.6053 4.0891 13 6 8.9364 7.5094 2.5516 14 1 8.5620 8.5190 2.6339 15 6 10.1043 7.2613 1.8622 16 7 10.7452 8.2496 1.2771 17 14 10.7766 5.5215 1.7593 18 1 11.6915 5.2758 2.9028 19 1 9.6521 4.5526 1.8081 20 1 11.5204 5.3528 0.4851 21 6 7.3860 5.5164 2.1884 22 7 4.9648 4.2115 0.5273 23 7 4.4535 3.0769 0.2020 24 1 -0.5400 0.9352 0.0004 25 1 -0.5401 -0.9354 -0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 3.7399 0.5066 1.0921 30 1 2.4771 1.2356 2.1130 31 1 3.3734 3.3749 3.1820 32 1 4.2436 5.9185 3.3373 33 1 5.0451 6.5880 1.8959 34 1 6.7991 6.8084 4.8656 35 1 6.3985 7.6797 3.3209 36 1 9.7062 5.1231 3.6592 37 1 10.3825 9.1486 1.3084 38 1 7.1311 6.0415 1.2680 39 1 7.8175 4.5311 2.0119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330256276.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:30 Heat of formation + Delta-G solvation = 88.300366 kcal Electronic energy + Delta-G solvation = -21280.270625 eV Core-core repulsion = 18033.348115 eV Total energy + Delta-G solvation = -3246.922510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.23095 -41.00189 -37.44236 -36.64780 -34.72109 -34.64498 -33.09296 -30.59150 -29.83010 -27.43621 -27.12015 -25.57591 -24.16786 -22.67606 -21.62337 -20.88299 -20.78335 -19.93583 -18.16267 -17.69253 -17.43969 -16.91205 -16.47221 -16.37382 -15.92935 -15.58465 -15.09725 -15.01100 -14.89239 -14.23513 -13.93797 -13.76296 -13.69980 -13.35623 -12.98765 -12.87373 -12.65607 -12.37823 -12.21750 -12.07140 -12.02697 -11.73064 -11.52605 -11.23132 -11.03333 -10.81252 -10.52880 -10.30184 -10.14002 -9.74938 -8.78672 -6.57613 0.64744 1.25451 1.32539 1.43883 1.46986 1.56181 1.58674 2.36105 2.85068 3.06372 3.31531 3.60330 3.69063 3.77535 3.83046 3.98873 4.03871 4.13109 4.19745 4.26757 4.36293 4.37629 4.50382 4.61697 4.70691 4.78071 4.88389 4.88720 4.98942 5.04953 5.12650 5.14453 5.34984 5.67405 5.68917 5.73388 5.81953 5.88424 6.10735 6.39303 6.82705 7.25644 7.52875 8.52708 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031281 B = 0.003643 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.890340 B = 7683.342710 C = 8016.292428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C -0.100 4.100 4 C 0.113 3.887 5 N -0.286 5.286 6 C -0.015 4.015 7 C -0.035 4.035 8 C 0.104 3.896 9 N -0.466 5.466 10 C 0.033 3.967 11 C 0.183 3.817 12 O -0.559 6.559 13 C -0.612 4.612 14 H 0.033 0.967 15 C -0.016 4.016 16 N -0.932 5.932 17 Si 1.071 2.929 18 H -0.250 1.250 19 H -0.246 1.246 20 H -0.287 1.287 21 C -0.006 4.006 22 N -0.307 5.307 23 N -0.117 5.117 24 H 0.096 0.904 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.142 0.858 31 H 0.235 0.765 32 H 0.125 0.875 33 H 0.041 0.959 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.355 0.645 37 H 0.256 0.744 38 H 0.057 0.943 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.884 -18.290 2.519 28.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.178 4.178 3 C -0.138 4.138 4 C -0.006 4.006 5 N -0.080 5.080 6 C -0.167 4.167 7 C -0.174 4.174 8 C -0.026 4.026 9 N -0.188 5.188 10 C -0.095 4.095 11 C 0.142 3.858 12 O -0.368 6.368 13 C -0.650 4.650 14 H 0.052 0.948 15 C -0.215 4.215 16 N -0.567 5.567 17 Si 0.893 3.107 18 H -0.175 1.175 19 H -0.171 1.171 20 H -0.214 1.214 21 C -0.136 4.136 22 N -0.173 5.173 23 N -0.096 5.096 24 H 0.114 0.886 25 H 0.132 0.868 26 H 0.145 0.855 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.129 0.871 30 H 0.160 0.840 31 H 0.251 0.749 32 H 0.143 0.857 33 H 0.060 0.940 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.206 0.794 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.734 -19.762 1.312 28.673 hybrid contribution -0.902 2.309 0.178 2.485 sum -21.636 -17.453 1.490 27.838 Atomic orbital electron populations 1.24101 0.95870 1.02842 0.99001 1.22739 0.96080 0.97310 1.01712 1.20925 0.97679 0.97444 0.97791 1.22517 0.94826 0.79982 1.03235 1.47762 1.32821 1.18144 1.09245 1.23913 1.04997 0.90574 0.97190 1.21966 1.02472 1.00376 0.92548 1.20924 0.94051 0.91184 0.96421 1.68605 1.00397 1.29364 1.20480 1.23885 0.92516 0.91794 1.01335 1.20626 0.89066 0.88712 0.87397 1.86408 1.46004 1.66078 1.38348 1.22592 1.11741 0.94177 1.36460 0.94830 1.27191 0.94278 1.08396 0.91670 1.70911 1.40947 1.01528 1.43305 0.83840 0.77415 0.71239 0.78227 1.17518 1.17138 1.21388 1.24701 0.93977 0.99546 0.95352 1.75058 1.20156 1.07462 1.14666 1.78163 1.09995 1.06685 1.14760 0.88557 0.86787 0.85469 0.91198 0.91059 0.87082 0.84027 0.74908 0.85705 0.94049 0.88554 0.90671 0.79424 0.93457 0.92436 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 14.32 67.79 0.97 -0.44 16 2 C -0.16 -1.35 9.52 25.65 0.24 -1.10 16 3 C -0.10 -1.21 5.78 29.85 0.17 -1.04 16 4 C 0.11 1.29 6.44 86.38 0.56 1.85 16 5 N -0.29 -6.32 3.44 -347.74 -1.20 -7.52 16 6 C -0.01 -0.32 11.50 83.49 0.96 0.64 16 7 C -0.03 -1.08 6.29 41.60 0.26 -0.82 16 8 C 0.10 3.27 5.39 85.56 0.46 3.73 16 9 N -0.47 -17.84 6.25 -914.76 -5.72 -23.56 16 10 C 0.03 1.36 7.37 86.41 0.64 1.99 16 11 C 0.18 8.98 1.06 -10.89 -0.01 8.97 16 12 O -0.56 -27.17 13.26 -148.98 -1.98 -29.14 16 13 C -0.61 -35.49 9.05 25.60 0.23 -35.26 16 14 H 0.03 2.10 8.04 -2.91 -0.02 2.08 16 15 C -0.02 -0.94 5.47 84.65 0.46 -0.48 16 16 N -0.93 -59.06 13.70 21.45 0.29 -58.76 16 17 Si 1.07 50.21 24.77 68.60 1.70 51.91 16 18 H -0.25 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.25 -10.58 4.71 99.48 0.47 -10.11 16 20 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 21 C -0.01 -0.28 5.69 86.37 0.49 0.21 16 22 N -0.31 -11.46 12.36 -48.60 -0.60 -12.06 16 23 N -0.12 -3.74 12.92 37.02 0.48 -3.26 16 24 H 0.10 0.76 7.84 -2.91 -0.02 0.74 16 25 H 0.11 0.61 8.06 -2.90 -0.02 0.58 16 26 H 0.13 0.76 8.06 -2.91 -0.02 0.74 16 27 H 0.07 0.91 7.79 -2.39 -0.02 0.89 16 28 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 29 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.14 0.62 8.07 -2.38 -0.02 0.60 16 31 H 0.23 2.68 8.06 -2.91 -0.02 2.65 16 32 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.04 1.43 7.70 -2.38 -0.02 1.42 16 34 H 0.10 3.65 8.14 -2.39 -0.02 3.64 16 35 H 0.08 3.01 7.74 -2.39 -0.02 2.99 16 36 H 0.36 15.99 4.33 -74.06 -0.32 15.67 16 37 H 0.26 16.39 8.71 -92.71 -0.81 15.58 16 38 H 0.06 2.84 7.74 -2.39 -0.02 2.82 16 39 H 0.07 3.05 6.55 -2.38 -0.02 3.03 16 Total: -1.00 -77.40 324.72 -1.13 -78.53 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.45 Total: 25.61 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 5.44 Total: -21.75 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -6.74 Total: -105.16 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -1.98 Total: -29.14 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 1.70 Total: 51.91 kcal Total: -77.40 -1.13 -78.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330256276.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.834 kcal (2) G-P(sol) polarization free energy of solvation -77.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds