Wall clock time and date at job start Mon Mar 30 2020 23:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32953 * 125.76144 * 2 1 4 4 C 1.32154 * 107.31488 * 180.02562 * 3 2 1 5 5 C 1.47768 * 126.44324 * 180.02562 * 4 3 2 6 6 O 1.21558 * 120.00056 * 173.91736 * 5 4 3 7 7 N 1.34784 * 120.00200 * 353.91543 * 5 4 3 8 8 C 1.46923 * 120.62781 * 353.02615 * 7 5 4 9 9 C 1.53191 * 108.77852 * 233.33085 * 8 7 5 10 10 C 1.53036 * 109.31255 * 305.36850 * 9 8 7 11 11 C 1.53041 * 109.53866 * 61.35936 * 10 9 8 12 12 H 1.09001 * 109.50033 * 58.58658 * 11 10 9 13 13 C 1.50702 * 109.49985 * 178.64963 * 11 10 9 14 14 H 1.08001 * 119.99722 * 0.02562 * 13 11 10 15 15 C 1.37880 * 120.00077 * 179.97438 * 13 11 10 16 16 N 1.31505 * 119.99872 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99620 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47211 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46777 * 120.00456 * 17 15 13 20 20 H 1.48500 * 109.46848 * 240.00201 * 17 15 13 21 21 C 1.46922 * 120.63243 * 172.74263 * 7 5 4 22 22 N 1.35191 * 107.11159 * 0.26196 * 4 3 2 23 23 C 1.46497 * 125.95289 * 179.71697 * 22 4 3 24 24 N 1.28875 * 108.09372 * 359.56586 * 22 4 3 25 25 H 1.09000 * 109.47325 * 90.00019 * 1 2 3 26 26 H 1.09004 * 109.46966 * 209.99829 * 1 2 3 27 27 H 1.08990 * 109.46965 * 329.99678 * 1 2 3 28 28 H 1.08996 * 109.58847 * 353.12426 * 8 7 5 29 29 H 1.09005 * 109.58706 * 113.39857 * 8 7 5 30 30 H 1.09003 * 109.49396 * 65.31461 * 9 8 7 31 31 H 1.08996 * 109.49992 * 185.41133 * 9 8 7 32 32 H 1.09000 * 109.46294 * 181.38257 * 10 9 8 33 33 H 1.09005 * 109.45952 * 301.34499 * 10 9 8 34 34 H 0.97004 * 119.99744 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.58871 * 246.45851 * 21 7 5 36 36 H 1.09000 * 109.58620 * 6.88328 * 21 7 5 37 37 H 1.09008 * 109.46966 * 89.99970 * 23 22 4 38 38 H 1.09003 * 109.47354 * 209.99592 * 23 22 4 39 39 H 1.08997 * 109.46911 * 330.00262 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2840 1.0789 0.0000 4 6 3.5377 0.6607 -0.0006 5 6 4.7465 1.5106 -0.0002 6 8 5.8458 1.0038 0.1107 7 7 4.6302 2.8478 -0.1230 8 6 3.3271 3.4626 -0.4102 9 6 3.4683 4.3665 -1.6389 10 6 4.5984 5.3708 -1.4012 11 6 5.9166 4.6197 -1.1999 12 1 6.1253 4.0091 -2.0783 13 6 7.0343 5.6104 -0.9989 14 1 6.8258 6.6699 -1.0129 15 6 8.3230 5.1640 -0.7962 16 7 8.5768 3.8738 -0.7787 17 14 9.7083 6.3920 -0.5464 18 1 9.1637 7.7721 -0.6092 19 1 10.3353 6.1676 0.7810 20 1 10.7271 6.2124 -1.6118 21 6 5.8030 3.7187 0.0339 22 7 3.5062 -0.6908 -0.0068 23 6 4.6717 -1.5783 -0.0155 24 7 2.2722 -1.0625 -0.0006 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 2.5921 2.6835 -0.6122 29 1 3.0056 4.0547 0.4467 30 1 3.7001 3.7583 -2.5132 31 1 2.5341 4.9027 -1.8054 32 1 4.6848 6.0312 -2.2640 33 1 4.3779 5.9619 -0.5123 34 1 9.4835 3.5597 -0.6364 35 1 5.6848 4.3337 0.9259 36 1 6.7017 3.1086 0.1247 37 1 4.9647 -1.8033 1.0101 38 1 4.4196 -2.5041 -0.5327 39 1 5.4979 -1.0879 -0.5302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330693878.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:34 Heat of formation + Delta-G solvation = 60.745058 kcal Electronic energy + Delta-G solvation = -22339.477679 eV Core-core repulsion = 19091.360281 eV Total energy + Delta-G solvation = -3248.117398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.38590 -39.30835 -36.84448 -34.82874 -33.46714 -32.24284 -31.58657 -29.88897 -29.64329 -26.72046 -25.26032 -24.86141 -22.75129 -21.90403 -21.20395 -19.83378 -18.60786 -16.96194 -16.82486 -16.64964 -16.04958 -15.27617 -14.54628 -14.36521 -13.85053 -13.83771 -13.74839 -13.52169 -12.96233 -12.79519 -12.58886 -12.53916 -12.49133 -12.21083 -11.95493 -11.81775 -11.10613 -11.00275 -10.56029 -10.47517 -10.28882 -10.22410 -9.94267 -9.73599 -9.45981 -9.23595 -9.11690 -8.89479 -8.46483 -7.82534 -6.02685 -4.10949 1.30065 2.26155 2.50283 3.28275 3.37164 3.40458 3.46384 3.51322 4.16784 4.38698 4.41307 4.76419 5.06741 5.15075 5.27818 5.46572 5.48860 5.56246 5.63805 5.67506 5.69292 5.89631 6.13924 6.26707 6.35310 6.38282 6.45994 6.59391 6.67194 6.81439 6.88666 6.98589 7.08867 7.21338 7.58586 7.83312 7.93838 8.06129 8.19438 8.34469 8.58410 8.93481 9.54811 11.02771 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027458 B = 0.004992 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.480100 B = 5608.125685 C = 6471.334284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.174 3.826 3 N -0.473 5.473 4 C 0.184 3.816 5 C 0.587 3.413 6 O -0.529 6.529 7 N -0.570 5.570 8 C 0.075 3.925 9 C -0.131 4.131 10 C -0.112 4.112 11 C 0.040 3.960 12 H 0.030 0.970 13 C -0.519 4.519 14 H 0.060 0.940 15 C 0.062 3.938 16 N -0.882 5.882 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.111 3.889 22 N -0.266 5.266 23 C 0.085 3.915 24 N -0.312 5.312 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.128 0.872 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.263 0.737 35 H 0.049 0.951 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.148 -7.879 1.329 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.104 4.104 3 N -0.202 5.202 4 C -0.091 4.091 5 C 0.369 3.631 6 O -0.405 6.405 7 N -0.301 5.301 8 C -0.048 4.048 9 C -0.170 4.170 10 C -0.150 4.150 11 C 0.021 3.979 12 H 0.048 0.952 13 C -0.557 4.557 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.519 5.519 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.008 4.008 22 N -0.060 5.060 23 C -0.056 4.056 24 N -0.151 5.151 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.145 0.855 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.142 0.858 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.674 -8.583 1.420 15.372 hybrid contribution 1.064 0.653 0.176 1.261 sum -11.610 -7.929 1.596 14.149 Atomic orbital electron populations 1.19985 0.83677 1.03822 1.03484 1.24327 0.98568 0.84503 1.03046 1.71015 0.99032 1.29005 1.21118 1.24713 0.95074 0.84077 1.05286 1.16616 0.84605 0.82529 0.79355 1.90819 1.25311 1.72840 1.51529 1.48295 1.11983 1.04198 1.65615 1.22615 0.85652 0.99072 0.97432 1.21931 0.99175 0.98190 0.97668 1.21657 0.95762 0.97214 1.00389 1.18973 0.91267 0.93743 0.93890 0.95206 1.21134 0.91698 0.92797 1.50087 0.92186 1.25057 0.98837 0.95198 0.94952 1.69889 1.20624 1.12525 1.48902 0.86528 0.82171 0.81514 0.77765 1.19747 1.20977 1.21007 1.22482 0.86471 0.92573 0.99278 1.46975 1.05874 1.06075 1.47075 1.22456 0.84010 0.93806 1.05324 1.74083 0.89807 1.27539 1.23668 0.90154 0.90250 0.89659 0.85481 0.92162 0.92536 0.92105 0.93062 0.93134 0.92716 0.93271 0.85796 0.89138 0.88727 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.47 10.51 36.01 0.38 -0.09 16 2 C 0.17 2.48 8.14 -156.92 -1.28 1.20 16 3 N -0.47 -7.72 7.86 -8.64 -0.07 -7.79 16 4 C 0.18 3.27 7.54 -155.26 -1.17 2.10 16 5 C 0.59 12.07 7.67 -12.36 -0.09 11.97 16 6 O -0.53 -12.02 14.20 5.31 0.08 -11.94 16 7 N -0.57 -11.86 2.97 -173.91 -0.52 -12.37 16 8 C 0.08 1.32 6.11 -3.71 -0.02 1.30 16 9 C -0.13 -2.27 6.08 -26.61 -0.16 -2.44 16 10 C -0.11 -2.28 5.11 -26.69 -0.14 -2.41 16 11 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 12 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 13 C -0.52 -13.90 8.56 -34.44 -0.29 -14.19 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 16 N -0.88 -25.17 11.40 55.43 0.63 -24.53 16 17 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C 0.11 2.67 5.41 -3.71 -0.02 2.65 16 22 N -0.27 -4.16 3.74 -65.62 -0.25 -4.41 16 23 C 0.08 1.02 10.79 59.85 0.65 1.67 16 24 N -0.31 -4.70 12.08 32.41 0.39 -4.31 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.13 2.14 4.16 -59.82 -0.25 1.89 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.12 3.40 5.13 -51.93 -0.27 3.13 16 37 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.12 1.59 6.48 -51.93 -0.34 1.25 16 LS Contribution 316.11 15.07 4.76 4.76 Total: -1.00 -31.07 316.11 -7.91 -38.98 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.47 Total: 1.52 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -2.45 Total: 4.15 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.19 Total: -53.42 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.07 -7.91 -38.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330693878.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.727 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds