Wall clock time and date at job start Mon Mar 30 2020 23:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32953 * 125.76144 * 2 1 4 4 C 1.32154 * 107.31488 * 180.02562 * 3 2 1 5 5 C 1.47768 * 126.44324 * 180.02562 * 4 3 2 6 6 O 1.21558 * 120.00056 * 173.91736 * 5 4 3 7 7 N 1.34784 * 120.00200 * 353.91543 * 5 4 3 8 8 C 1.46923 * 120.62781 * 353.02615 * 7 5 4 9 9 C 1.53191 * 108.77852 * 233.33085 * 8 7 5 10 10 C 1.53036 * 109.31255 * 305.36850 * 9 8 7 11 11 C 1.53041 * 109.53866 * 61.35936 * 10 9 8 12 12 H 1.09001 * 109.50033 * 58.58658 * 11 10 9 13 13 C 1.50702 * 109.49985 * 178.64963 * 11 10 9 14 14 H 1.08001 * 119.99722 * 0.02562 * 13 11 10 15 15 C 1.37880 * 120.00077 * 179.97438 * 13 11 10 16 16 N 1.31505 * 119.99872 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99620 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47211 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46777 * 120.00456 * 17 15 13 20 20 H 1.48500 * 109.46848 * 240.00201 * 17 15 13 21 21 C 1.46922 * 120.63243 * 172.74263 * 7 5 4 22 22 N 1.35191 * 107.11159 * 0.26196 * 4 3 2 23 23 C 1.46497 * 125.95289 * 179.71697 * 22 4 3 24 24 N 1.28875 * 108.09372 * 359.56586 * 22 4 3 25 25 H 1.09000 * 109.47325 * 90.00019 * 1 2 3 26 26 H 1.09004 * 109.46966 * 209.99829 * 1 2 3 27 27 H 1.08990 * 109.46965 * 329.99678 * 1 2 3 28 28 H 1.08996 * 109.58847 * 353.12426 * 8 7 5 29 29 H 1.09005 * 109.58706 * 113.39857 * 8 7 5 30 30 H 1.09003 * 109.49396 * 65.31461 * 9 8 7 31 31 H 1.08996 * 109.49992 * 185.41133 * 9 8 7 32 32 H 1.09000 * 109.46294 * 181.38257 * 10 9 8 33 33 H 1.09005 * 109.45952 * 301.34499 * 10 9 8 34 34 H 0.97004 * 119.99744 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.58871 * 246.45851 * 21 7 5 36 36 H 1.09000 * 109.58620 * 6.88328 * 21 7 5 37 37 H 1.09008 * 109.46966 * 89.99970 * 23 22 4 38 38 H 1.09003 * 109.47354 * 209.99592 * 23 22 4 39 39 H 1.08997 * 109.46911 * 330.00262 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2840 1.0789 0.0000 4 6 3.5377 0.6607 -0.0006 5 6 4.7465 1.5106 -0.0002 6 8 5.8458 1.0038 0.1107 7 7 4.6302 2.8478 -0.1230 8 6 3.3271 3.4626 -0.4102 9 6 3.4683 4.3665 -1.6389 10 6 4.5984 5.3708 -1.4012 11 6 5.9166 4.6197 -1.1999 12 1 6.1253 4.0091 -2.0783 13 6 7.0343 5.6104 -0.9989 14 1 6.8258 6.6699 -1.0129 15 6 8.3230 5.1640 -0.7962 16 7 8.5768 3.8738 -0.7787 17 14 9.7083 6.3920 -0.5464 18 1 9.1637 7.7721 -0.6092 19 1 10.3353 6.1676 0.7810 20 1 10.7271 6.2124 -1.6118 21 6 5.8030 3.7187 0.0339 22 7 3.5062 -0.6908 -0.0068 23 6 4.6717 -1.5783 -0.0155 24 7 2.2722 -1.0625 -0.0006 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 2.5921 2.6835 -0.6122 29 1 3.0056 4.0547 0.4467 30 1 3.7001 3.7583 -2.5132 31 1 2.5341 4.9027 -1.8054 32 1 4.6848 6.0312 -2.2640 33 1 4.3779 5.9619 -0.5123 34 1 9.4835 3.5597 -0.6364 35 1 5.6848 4.3337 0.9259 36 1 6.7017 3.1086 0.1247 37 1 4.9647 -1.8033 1.0101 38 1 4.4196 -2.5041 -0.5327 39 1 5.4979 -1.0879 -0.5302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330693878.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:33 Heat of formation + Delta-G solvation = 42.318506 kcal Electronic energy + Delta-G solvation = -22340.276714 eV Core-core repulsion = 19091.360281 eV Total energy + Delta-G solvation = -3248.916433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.59608 -40.94464 -38.51081 -36.06493 -35.24225 -33.78607 -33.05902 -31.47429 -30.74136 -27.99778 -27.07325 -26.36925 -24.18575 -23.53234 -22.48925 -21.37373 -20.17559 -18.69810 -18.05741 -17.96195 -17.81756 -16.91706 -16.41530 -15.99678 -15.34882 -15.13360 -14.85522 -14.64667 -14.52558 -14.47692 -13.99332 -13.85562 -13.55888 -13.37586 -13.32396 -13.03489 -12.89720 -12.73242 -12.29656 -12.25309 -12.04072 -11.67412 -11.46652 -11.36635 -11.12000 -10.98205 -10.57481 -10.50126 -10.39381 -9.51971 -8.10803 -6.27239 -0.05443 1.04995 1.32365 1.41634 1.43677 1.55301 2.00344 2.03167 2.43240 2.85911 3.17861 3.30862 3.52717 4.15901 4.18444 4.19766 4.21017 4.36953 4.55756 4.61466 4.70996 4.78919 4.80235 4.83686 4.85089 5.02077 5.08165 5.14681 5.23446 5.25583 5.32620 5.42595 5.45143 5.58286 5.66036 5.87679 5.95861 6.30867 6.41236 6.81762 6.88540 7.05176 7.42805 8.93321 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027458 B = 0.004992 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.480100 B = 5608.125685 C = 6471.334284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.172 3.828 3 N -0.475 5.475 4 C 0.160 3.840 5 C 0.584 3.416 6 O -0.562 6.562 7 N -0.577 5.577 8 C 0.075 3.925 9 C -0.123 4.123 10 C -0.106 4.106 11 C 0.039 3.961 12 H -0.011 1.011 13 C -0.534 4.534 14 H 0.063 0.937 15 C 0.012 3.988 16 N -0.914 5.914 17 Si 0.958 3.042 18 H -0.262 1.262 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.125 3.875 22 N -0.262 5.262 23 C 0.079 3.921 24 N -0.313 5.313 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.141 0.859 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.261 0.739 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.126 0.874 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.541 -7.648 1.511 17.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.105 4.105 3 N -0.205 5.205 4 C -0.115 4.115 5 C 0.367 3.633 6 O -0.440 6.440 7 N -0.308 5.308 8 C -0.046 4.046 9 C -0.161 4.161 10 C -0.144 4.144 11 C 0.020 3.980 12 H 0.007 0.993 13 C -0.573 4.573 14 H 0.081 0.919 15 C -0.187 4.187 16 N -0.553 5.553 17 Si 0.783 3.217 18 H -0.186 1.186 19 H -0.208 1.208 20 H -0.209 1.209 21 C 0.004 3.996 22 N -0.057 5.057 23 C -0.060 4.060 24 N -0.152 5.152 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.158 0.842 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.120 0.880 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.144 0.856 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.100 -8.342 1.595 17.324 hybrid contribution 1.751 0.499 0.109 1.824 sum -13.349 -7.843 1.704 15.576 Atomic orbital electron populations 1.20249 0.80118 1.05371 1.05105 1.25294 1.00419 0.83456 1.01371 1.70915 0.98533 1.29961 1.21052 1.24040 0.94492 0.84797 1.08130 1.16912 0.85270 0.82636 0.78442 1.90791 1.26998 1.73493 1.52740 1.48272 1.12242 1.04330 1.65909 1.22843 0.84145 0.99554 0.98057 1.21895 0.99744 0.97463 0.97011 1.21552 0.94410 0.97544 1.00886 1.18907 0.93399 0.93398 0.92318 0.99324 1.21520 0.92722 0.93348 1.49673 0.91882 1.25862 1.01385 0.96756 0.94725 1.70066 1.20870 1.14428 1.49932 0.85505 0.79021 0.79645 0.77495 1.18577 1.20764 1.20898 1.21947 0.86618 0.92215 0.98812 1.47240 1.06823 1.05643 1.45953 1.22657 0.82748 0.94191 1.06444 1.74129 0.89480 1.27834 1.23738 0.88362 0.88497 0.88324 0.84190 0.90766 0.93680 0.87984 0.92777 0.92259 0.92995 0.93529 0.89595 0.87767 0.85563 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.74 10.51 71.24 0.75 0.01 16 2 C 0.17 4.48 8.14 138.66 1.13 5.61 16 3 N -0.48 -14.68 7.86 -181.25 -1.43 -16.11 16 4 C 0.16 5.63 7.54 136.70 1.03 6.66 16 5 C 0.58 24.69 7.67 86.76 0.67 25.36 16 6 O -0.56 -26.92 14.20 -3.90 -0.06 -26.97 16 7 N -0.58 -24.44 2.97 -822.41 -2.44 -26.89 16 8 C 0.08 2.55 6.11 86.36 0.53 3.07 16 9 C -0.12 -4.04 6.08 30.67 0.19 -3.85 16 10 C -0.11 -4.22 5.11 30.62 0.16 -4.06 16 11 C 0.04 1.98 2.25 -11.46 -0.03 1.95 16 12 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 13 C -0.53 -29.17 8.56 25.60 0.22 -28.95 16 14 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 15 C 0.01 0.68 5.30 84.66 0.45 1.13 16 16 N -0.91 -54.33 11.40 21.45 0.24 -54.09 16 17 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 18 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 C 0.13 6.24 5.41 86.36 0.47 6.71 16 22 N -0.26 -7.95 3.74 -361.53 -1.35 -9.31 16 23 C 0.08 1.88 10.79 127.77 1.38 3.26 16 24 N -0.31 -8.76 12.08 -51.38 -0.62 -9.38 16 25 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.14 4.44 4.16 -17.96 -0.07 4.36 16 29 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.06 2.24 8.14 -2.38 -0.02 2.23 16 34 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 35 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.09 4.99 5.13 -2.39 -0.01 4.98 16 37 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.10 2.76 6.48 -2.39 -0.02 2.75 16 Total: -1.00 -69.67 316.11 4.30 -65.37 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.99 Total: 14.82 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 6.93 Total: 16.89 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -5.60 Total: -115.77 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.06 Total: -26.97 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -69.67 4.30 -65.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330693878.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.692 kcal (2) G-P(sol) polarization free energy of solvation -69.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds