Wall clock time and date at job start Mon Mar 30 2020 23:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32963 * 125.76282 * 2 1 4 4 C 1.32144 * 107.31597 * 180.02562 * 3 2 1 5 5 C 1.47774 * 126.44527 * 179.74170 * 4 3 2 6 6 O 1.21552 * 120.00275 * 186.67087 * 5 4 3 7 7 N 1.34779 * 119.99831 * 6.66576 * 5 4 3 8 8 C 1.46932 * 120.62767 * 6.46589 * 7 5 4 9 9 C 1.53197 * 108.76932 * 126.37107 * 8 7 5 10 10 C 1.53040 * 109.31770 * 54.63268 * 9 8 7 11 11 C 1.53041 * 109.53636 * 298.63682 * 10 9 8 12 12 H 1.08998 * 109.49379 * 301.37601 * 11 10 9 13 13 C 1.50701 * 109.49466 * 181.31894 * 11 10 9 14 14 H 1.08005 * 120.00108 * 359.97438 * 13 11 10 15 15 C 1.37871 * 119.99912 * 180.02562 * 13 11 10 16 16 N 1.31517 * 120.00181 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99995 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47626 * 59.99411 * 17 15 13 19 19 H 1.48504 * 109.46955 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47149 * 299.99077 * 17 15 13 21 21 C 1.46922 * 120.63166 * 186.18504 * 7 5 4 22 22 N 1.35196 * 107.11458 * 0.02562 * 4 3 2 23 23 C 1.46500 * 125.95694 * 180.02562 * 22 4 3 24 24 N 1.28868 * 108.09077 * 359.97438 * 22 4 3 25 25 H 1.09000 * 109.47172 * 89.99415 * 1 2 3 26 26 H 1.08995 * 109.47136 * 209.99384 * 1 2 3 27 27 H 1.09003 * 109.47247 * 330.00007 * 1 2 3 28 28 H 1.08994 * 109.58305 * 246.14989 * 8 7 5 29 29 H 1.08993 * 109.58635 * 6.44119 * 8 7 5 30 30 H 1.09005 * 109.49201 * 174.58877 * 9 8 7 31 31 H 1.08997 * 109.49662 * 294.67737 * 9 8 7 32 32 H 1.09001 * 109.45269 * 58.65459 * 10 9 8 33 33 H 1.08992 * 109.46005 * 178.61114 * 10 9 8 34 34 H 0.96996 * 120.00073 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.58391 * 353.42020 * 21 7 5 36 36 H 1.09004 * 109.58556 * 113.84535 * 21 7 5 37 37 H 1.09000 * 109.47350 * 89.99412 * 23 22 4 38 38 H 1.08999 * 109.47071 * 210.00343 * 23 22 4 39 39 H 1.09004 * 109.46763 * 329.99422 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2841 1.0789 0.0000 4 6 3.5376 0.6608 -0.0006 5 6 4.7465 1.5106 -0.0061 6 8 5.8448 1.0044 -0.1284 7 7 4.6312 2.8472 0.1242 8 6 3.3282 3.4614 0.4136 9 6 3.4675 4.3523 1.6521 10 6 4.6002 5.3568 1.4284 11 6 5.9176 4.6054 1.2233 12 1 6.1226 3.9858 2.0963 13 6 7.0376 5.5960 1.0354 14 1 6.8309 6.6558 1.0592 15 6 8.3260 5.1493 0.8319 16 7 8.5776 3.8588 0.8023 17 14 9.7142 6.3772 0.5982 18 1 9.8197 7.2403 1.8019 19 1 10.9922 5.6474 0.3993 20 1 9.4346 7.2198 -0.5922 21 6 5.8072 3.7170 -0.0144 22 7 3.5062 -0.6908 -0.0015 23 6 4.6717 -1.5784 -0.0018 24 7 2.2722 -1.0624 -0.0009 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3634 0.8900 0.5138 28 1 3.0119 4.0651 -0.4370 29 1 2.5906 2.6816 0.6029 30 1 2.5337 4.8886 1.8213 31 1 3.6953 3.7347 2.5208 32 1 4.3835 5.9576 0.5451 33 1 4.6851 6.0080 2.2983 34 1 9.4841 3.5446 0.6594 35 1 6.7051 3.1058 -0.1050 36 1 5.6970 4.3419 -0.9007 37 1 4.9606 -1.7991 1.0257 38 1 4.4217 -2.5062 -0.5164 39 1 5.5000 -1.0900 -0.5153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330693881.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:36 Heat of formation + Delta-G solvation = 61.051238 kcal Electronic energy + Delta-G solvation = -22343.166550 eV Core-core repulsion = 19095.062429 eV Total energy + Delta-G solvation = -3248.104121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.38602 -39.31675 -36.85751 -34.82833 -33.47250 -32.24249 -31.58739 -29.88918 -29.65119 -26.72203 -25.25717 -24.86063 -22.75697 -21.90369 -21.20794 -19.84138 -18.59980 -16.95612 -16.83462 -16.64189 -16.03792 -15.28795 -14.54878 -14.35984 -13.87203 -13.84809 -13.71664 -13.52917 -13.03266 -12.77144 -12.59482 -12.57123 -12.42953 -12.18063 -11.95441 -11.83079 -11.11217 -10.96695 -10.60265 -10.48151 -10.27228 -10.23892 -9.94594 -9.72819 -9.45820 -9.23138 -9.11051 -8.90066 -8.45558 -7.83145 -6.02245 -4.10851 1.29983 2.26400 2.50418 3.30548 3.36703 3.38144 3.46099 3.52023 4.16692 4.39114 4.41368 4.75883 5.06829 5.16052 5.27960 5.46508 5.49504 5.56503 5.64572 5.67904 5.69293 5.89509 6.13824 6.26694 6.35378 6.38267 6.46156 6.59866 6.67361 6.82020 6.88788 6.98719 7.08739 7.21727 7.58781 7.83623 7.93937 8.06267 8.19625 8.34467 8.58369 8.93113 9.54817 11.03093 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027466 B = 0.004995 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.181254 B = 5604.132022 C = 6467.308482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.174 3.826 3 N -0.473 5.473 4 C 0.185 3.815 5 C 0.588 3.412 6 O -0.530 6.530 7 N -0.570 5.570 8 C 0.074 3.926 9 C -0.132 4.132 10 C -0.112 4.112 11 C 0.041 3.959 12 H 0.029 0.971 13 C -0.520 4.520 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.882 5.882 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.111 3.889 22 N -0.266 5.266 23 C 0.081 3.919 24 N -0.312 5.312 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.129 0.871 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.264 0.736 35 H 0.125 0.875 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.104 -7.849 -1.537 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.105 4.105 3 N -0.202 5.202 4 C -0.091 4.091 5 C 0.370 3.630 6 O -0.406 6.406 7 N -0.300 5.300 8 C -0.049 4.049 9 C -0.170 4.170 10 C -0.150 4.150 11 C 0.021 3.979 12 H 0.047 0.953 13 C -0.558 4.558 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.520 5.520 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.008 4.008 22 N -0.060 5.060 23 C -0.060 4.060 24 N -0.151 5.151 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.146 0.854 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.143 0.857 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.626 -8.561 -1.639 15.342 hybrid contribution 1.049 0.677 -0.113 1.253 sum -11.577 -7.884 -1.752 14.116 Atomic orbital electron populations 1.19983 0.83678 1.03842 1.03456 1.24326 0.98565 0.84503 1.03067 1.70997 0.99038 1.28994 1.21133 1.24697 0.95057 0.84090 1.05302 1.16608 0.84580 0.82503 0.79354 1.90800 1.25358 1.72797 1.51614 1.48301 1.11871 1.04299 1.65551 1.22644 0.85715 0.99175 0.97357 1.21934 0.99170 0.98252 0.97624 1.21656 0.95740 0.97218 1.00409 1.18887 0.91277 0.93812 0.93885 0.95253 1.21052 0.91661 0.92712 1.50414 0.92287 1.25053 0.98821 0.95208 0.94922 1.69867 1.20871 1.12522 1.48706 0.86636 0.81342 0.81207 0.78699 1.20264 1.21265 1.20215 1.22401 0.86412 0.92645 0.99380 1.46976 1.05866 1.06060 1.47068 1.22519 0.84184 0.93903 1.05374 1.74078 0.89829 1.27546 1.23635 0.90195 0.90243 0.89635 0.92157 0.85370 0.92107 0.92547 0.93131 0.93062 0.92590 0.85738 0.93256 0.89194 0.88721 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.47 10.51 36.00 0.38 -0.09 16 2 C 0.17 2.48 8.14 -156.92 -1.28 1.20 16 3 N -0.47 -7.73 7.86 -8.64 -0.07 -7.79 16 4 C 0.18 3.27 7.54 -155.26 -1.17 2.10 16 5 C 0.59 12.08 7.68 -12.36 -0.09 11.99 16 6 O -0.53 -12.01 14.08 5.32 0.07 -11.94 16 7 N -0.57 -11.85 2.98 -174.18 -0.52 -12.37 16 8 C 0.07 1.30 6.13 -3.71 -0.02 1.28 16 9 C -0.13 -2.28 6.08 -26.61 -0.16 -2.44 16 10 C -0.11 -2.28 5.11 -26.69 -0.14 -2.42 16 11 C 0.04 1.00 2.24 -91.88 -0.21 0.79 16 12 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 13 C -0.52 -13.93 8.56 -34.44 -0.29 -14.23 16 14 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 15 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 16 N -0.88 -25.18 11.39 55.43 0.63 -24.54 16 17 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 C 0.11 2.67 5.39 -3.94 -0.02 2.65 16 22 N -0.27 -4.17 3.74 -65.62 -0.25 -4.41 16 23 C 0.08 0.98 10.94 59.85 0.65 1.63 16 24 N -0.31 -4.71 12.07 32.41 0.39 -4.32 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.13 2.16 4.12 -60.97 -0.25 1.90 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.12 3.41 5.10 -51.93 -0.27 3.15 16 36 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.12 1.63 6.19 -51.93 -0.32 1.31 16 LS Contribution 315.78 15.07 4.76 4.76 Total: -1.00 -30.99 315.78 -7.90 -38.89 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.45 Total: 1.70 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -2.45 Total: 4.08 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.19 Total: -53.44 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.07 Total: -11.94 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.99 -7.90 -38.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330693881.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.942 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds