Wall clock time and date at job start Mon Mar 30 2020 23:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32963 * 125.76282 * 2 1 4 4 C 1.32144 * 107.31597 * 180.02562 * 3 2 1 5 5 C 1.47774 * 126.44527 * 179.74170 * 4 3 2 6 6 O 1.21552 * 120.00275 * 186.67087 * 5 4 3 7 7 N 1.34779 * 119.99831 * 6.66576 * 5 4 3 8 8 C 1.46932 * 120.62767 * 6.46589 * 7 5 4 9 9 C 1.53197 * 108.76932 * 126.37107 * 8 7 5 10 10 C 1.53040 * 109.31770 * 54.63268 * 9 8 7 11 11 C 1.53041 * 109.53636 * 298.63682 * 10 9 8 12 12 H 1.08998 * 109.49379 * 301.37601 * 11 10 9 13 13 C 1.50701 * 109.49466 * 181.31894 * 11 10 9 14 14 H 1.08005 * 120.00108 * 359.97438 * 13 11 10 15 15 C 1.37871 * 119.99912 * 180.02562 * 13 11 10 16 16 N 1.31517 * 120.00181 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99995 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47626 * 59.99411 * 17 15 13 19 19 H 1.48504 * 109.46955 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47149 * 299.99077 * 17 15 13 21 21 C 1.46922 * 120.63166 * 186.18504 * 7 5 4 22 22 N 1.35196 * 107.11458 * 0.02562 * 4 3 2 23 23 C 1.46500 * 125.95694 * 180.02562 * 22 4 3 24 24 N 1.28868 * 108.09077 * 359.97438 * 22 4 3 25 25 H 1.09000 * 109.47172 * 89.99415 * 1 2 3 26 26 H 1.08995 * 109.47136 * 209.99384 * 1 2 3 27 27 H 1.09003 * 109.47247 * 330.00007 * 1 2 3 28 28 H 1.08994 * 109.58305 * 246.14989 * 8 7 5 29 29 H 1.08993 * 109.58635 * 6.44119 * 8 7 5 30 30 H 1.09005 * 109.49201 * 174.58877 * 9 8 7 31 31 H 1.08997 * 109.49662 * 294.67737 * 9 8 7 32 32 H 1.09001 * 109.45269 * 58.65459 * 10 9 8 33 33 H 1.08992 * 109.46005 * 178.61114 * 10 9 8 34 34 H 0.96996 * 120.00073 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.58391 * 353.42020 * 21 7 5 36 36 H 1.09004 * 109.58556 * 113.84535 * 21 7 5 37 37 H 1.09000 * 109.47350 * 89.99412 * 23 22 4 38 38 H 1.08999 * 109.47071 * 210.00343 * 23 22 4 39 39 H 1.09004 * 109.46763 * 329.99422 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2841 1.0789 0.0000 4 6 3.5376 0.6608 -0.0006 5 6 4.7465 1.5106 -0.0061 6 8 5.8448 1.0044 -0.1284 7 7 4.6312 2.8472 0.1242 8 6 3.3282 3.4614 0.4136 9 6 3.4675 4.3523 1.6521 10 6 4.6002 5.3568 1.4284 11 6 5.9176 4.6054 1.2233 12 1 6.1226 3.9858 2.0963 13 6 7.0376 5.5960 1.0354 14 1 6.8309 6.6558 1.0592 15 6 8.3260 5.1493 0.8319 16 7 8.5776 3.8588 0.8023 17 14 9.7142 6.3772 0.5982 18 1 9.8197 7.2403 1.8019 19 1 10.9922 5.6474 0.3993 20 1 9.4346 7.2198 -0.5922 21 6 5.8072 3.7170 -0.0144 22 7 3.5062 -0.6908 -0.0015 23 6 4.6717 -1.5784 -0.0018 24 7 2.2722 -1.0624 -0.0009 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3634 0.8900 0.5138 28 1 3.0119 4.0651 -0.4370 29 1 2.5906 2.6816 0.6029 30 1 2.5337 4.8886 1.8213 31 1 3.6953 3.7347 2.5208 32 1 4.3835 5.9576 0.5451 33 1 4.6851 6.0080 2.2983 34 1 9.4841 3.5446 0.6594 35 1 6.7051 3.1058 -0.1050 36 1 5.6970 4.3419 -0.9007 37 1 4.9606 -1.7991 1.0257 38 1 4.4217 -2.5062 -0.5164 39 1 5.5000 -1.0900 -0.5153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330693881.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:36 Heat of formation + Delta-G solvation = 42.689671 kcal Electronic energy + Delta-G solvation = -22343.962767 eV Core-core repulsion = 19095.062429 eV Total energy + Delta-G solvation = -3248.900338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.59749 -40.95355 -38.52453 -36.06827 -35.24352 -33.78574 -33.06134 -31.48650 -30.73900 -28.00077 -27.07099 -26.36782 -24.19277 -23.53029 -22.49611 -21.37892 -20.17111 -18.69662 -18.08059 -17.94405 -17.79785 -16.92694 -16.42258 -15.99432 -15.36219 -15.13210 -14.83754 -14.68996 -14.53266 -14.46084 -14.04769 -13.80130 -13.53630 -13.37416 -13.32009 -13.05183 -12.83970 -12.75575 -12.31557 -12.27788 -12.03781 -11.67935 -11.48319 -11.33389 -11.13977 -10.97690 -10.56859 -10.48995 -10.38568 -9.52680 -8.10307 -6.27124 -0.05642 1.05015 1.32499 1.43642 1.44730 1.52820 1.99689 2.03905 2.43515 2.85650 3.18055 3.31073 3.52554 4.16179 4.18263 4.19991 4.21072 4.36713 4.57014 4.61205 4.71034 4.79131 4.80202 4.83790 4.85436 5.02082 5.08192 5.14834 5.23367 5.25594 5.32571 5.42603 5.45106 5.58106 5.66305 5.88005 5.96244 6.30822 6.41153 6.81482 6.88652 7.05096 7.42879 8.93344 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027466 B = 0.004995 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.181254 B = 5604.132022 C = 6467.308482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.172 3.828 3 N -0.475 5.475 4 C 0.161 3.839 5 C 0.584 3.416 6 O -0.562 6.562 7 N -0.577 5.577 8 C 0.074 3.926 9 C -0.123 4.123 10 C -0.106 4.106 11 C 0.039 3.961 12 H -0.012 1.012 13 C -0.536 4.536 14 H 0.063 0.937 15 C 0.013 3.987 16 N -0.914 5.914 17 Si 0.958 3.042 18 H -0.270 1.270 19 H -0.288 1.288 20 H -0.267 1.267 21 C 0.125 3.875 22 N -0.262 5.262 23 C 0.075 3.925 24 N -0.313 5.313 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.143 0.857 30 H 0.102 0.898 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.261 0.739 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.101 0.899 38 H 0.127 0.873 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.489 -7.597 -1.681 17.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.105 4.105 3 N -0.204 5.204 4 C -0.114 4.114 5 C 0.368 3.632 6 O -0.441 6.441 7 N -0.307 5.307 8 C -0.047 4.047 9 C -0.161 4.161 10 C -0.144 4.144 11 C 0.020 3.980 12 H 0.006 0.994 13 C -0.575 4.575 14 H 0.081 0.919 15 C -0.187 4.187 16 N -0.553 5.553 17 Si 0.783 3.217 18 H -0.195 1.195 19 H -0.214 1.214 20 H -0.192 1.192 21 C 0.004 3.996 22 N -0.056 5.056 23 C -0.064 4.064 24 N -0.152 5.152 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.092 0.908 29 H 0.159 0.841 30 H 0.120 0.880 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.120 0.880 38 H 0.145 0.855 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.044 -8.298 -1.776 17.272 hybrid contribution 1.731 0.517 -0.061 1.807 sum -13.314 -7.780 -1.838 15.530 Atomic orbital electron populations 1.20249 0.80118 1.05418 1.05061 1.25293 1.00416 0.83453 1.01388 1.70895 0.98539 1.29948 1.21064 1.24027 0.94480 0.84807 1.08136 1.16907 0.85253 0.82610 0.78443 1.90775 1.27035 1.73452 1.52791 1.48278 1.12119 1.04433 1.65860 1.22873 0.84214 0.99670 0.97965 1.21898 0.99735 0.97522 0.96977 1.21551 0.94397 0.97550 1.00896 1.18823 0.93416 0.93445 0.92327 0.99390 1.21458 0.92685 0.93329 1.49999 0.91871 1.25862 1.01389 0.96769 0.94667 1.70050 1.21027 1.14434 1.49757 0.85613 0.78097 0.78967 0.79004 1.19494 1.21376 1.19224 1.21864 0.86584 0.92275 0.98889 1.47239 1.06811 1.05629 1.45957 1.22717 0.82966 0.94361 1.06389 1.74123 0.89506 1.27850 1.23707 0.88446 0.88491 0.88242 0.90769 0.84070 0.87980 0.93702 0.92253 0.92777 0.92973 0.89520 0.93565 0.88022 0.85495 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.74 10.51 71.24 0.75 0.01 16 2 C 0.17 4.48 8.14 138.65 1.13 5.61 16 3 N -0.48 -14.69 7.86 -181.25 -1.42 -16.11 16 4 C 0.16 5.64 7.54 136.70 1.03 6.67 16 5 C 0.58 24.72 7.68 86.77 0.67 25.38 16 6 O -0.56 -26.89 14.08 -3.88 -0.05 -26.95 16 7 N -0.58 -24.43 2.98 -823.24 -2.45 -26.88 16 8 C 0.07 2.50 6.13 86.36 0.53 3.03 16 9 C -0.12 -4.05 6.08 30.67 0.19 -3.86 16 10 C -0.11 -4.23 5.11 30.62 0.16 -4.07 16 11 C 0.04 1.98 2.24 -11.61 -0.03 1.96 16 12 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 13 C -0.54 -29.29 8.56 25.60 0.22 -29.07 16 14 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 15 C 0.01 0.71 5.30 84.65 0.45 1.16 16 16 N -0.91 -54.34 11.39 21.45 0.24 -54.09 16 17 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 21 C 0.13 6.24 5.39 86.22 0.46 6.70 16 22 N -0.26 -7.96 3.74 -361.52 -1.35 -9.31 16 23 C 0.07 1.79 10.94 127.77 1.40 3.19 16 24 N -0.31 -8.78 12.07 -51.38 -0.62 -9.40 16 25 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.14 4.48 4.12 -20.24 -0.08 4.39 16 30 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.09 5.03 5.10 -2.39 -0.01 5.02 16 36 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.10 2.89 6.19 -2.39 -0.01 2.87 16 Total: -1.00 -69.51 315.78 4.30 -65.21 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.98 Total: 15.23 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 6.95 Total: 16.70 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -5.61 Total: -115.80 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.05 Total: -26.95 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -69.51 4.30 -65.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330693881.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.899 kcal (2) G-P(sol) polarization free energy of solvation -69.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds