Wall clock time and date at job start Tue Mar 31 2020 00:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30840 * 126.46484 * 2 1 4 4 N 1.28916 * 109.74126 * 180.02562 * 3 2 1 5 5 C 1.29835 * 109.47681 * 0.02700 * 4 3 2 6 6 N 1.34695 * 126.46580 * 180.02562 * 2 1 3 7 7 C 1.46256 * 128.84627 * 359.83257 * 6 2 1 8 8 C 1.53320 * 108.72866 * 197.13086 * 7 6 2 9 9 H 1.08997 * 109.43766 * 69.72138 * 8 7 6 10 10 C 1.50696 * 109.45517 * 189.66890 * 8 7 6 11 11 O 1.21289 * 119.99762 * 0.11341 * 10 8 7 12 12 N 1.34774 * 120.00038 * 180.11129 * 10 8 7 13 13 C 1.46498 * 120.00377 * 0.02562 * 12 10 8 14 14 C 1.46506 * 119.99868 * 180.02562 * 12 10 8 15 15 C 1.50703 * 109.47289 * 89.99907 * 14 12 10 16 16 H 1.07994 * 119.99399 * 0.02562 * 15 14 12 17 17 C 1.37874 * 119.99789 * 179.97438 * 15 14 12 18 18 N 1.31518 * 120.00144 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99733 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46632 * 90.00476 * 19 17 15 21 21 H 1.48496 * 109.46690 * 210.00029 * 19 17 15 22 22 H 1.48498 * 109.47171 * 330.00226 * 19 17 15 23 23 C 1.53141 * 109.58068 * 309.70273 * 8 7 6 24 24 C 1.50802 * 128.52123 * 179.90447 * 5 4 3 25 25 H 1.09001 * 109.47220 * 269.97795 * 1 2 3 26 26 H 1.08998 * 109.47470 * 29.97108 * 1 2 3 27 27 H 1.09002 * 109.47187 * 149.97473 * 1 2 3 28 28 H 1.08999 * 109.59292 * 77.35490 * 7 6 2 29 29 H 1.08997 * 109.59431 * 316.89759 * 7 6 2 30 30 H 1.08999 * 109.46923 * 270.00446 * 13 12 10 31 31 H 1.08997 * 109.46694 * 29.99578 * 13 12 10 32 32 H 1.08995 * 109.47258 * 149.99854 * 13 12 10 33 33 H 1.09001 * 109.47060 * 210.00357 * 14 12 10 34 34 H 1.09004 * 109.47073 * 329.99846 * 14 12 10 35 35 H 0.96997 * 119.99752 * 179.97438 * 18 17 15 36 36 H 1.09004 * 109.49937 * 189.37795 * 23 8 7 37 37 H 1.08999 * 109.49877 * 309.47939 * 23 8 7 38 38 H 1.08992 * 109.73195 * 76.22884 * 24 5 4 39 39 H 1.09000 * 109.73173 * 315.54746 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2845 1.0522 0.0000 4 7 3.5192 0.6813 -0.0005 5 6 3.5815 -0.6156 -0.0015 6 7 2.3075 -1.0832 -0.0005 7 6 1.9366 -2.4980 0.0022 8 6 3.1551 -3.3255 0.4281 9 1 3.3621 -3.1494 1.4836 10 6 2.8690 -4.7889 0.2102 11 8 1.7989 -5.1367 -0.2426 12 7 3.8022 -5.7112 0.5183 13 6 5.0945 -5.2911 1.0656 14 6 3.5242 -7.1338 0.3058 15 6 3.9559 -7.5281 -1.0832 16 1 4.3939 -6.7926 -1.7416 17 6 3.7927 -8.8280 -1.5128 18 7 3.2597 -9.7237 -0.7107 19 14 4.3271 -9.3165 -3.2348 20 1 5.7419 -9.7667 -3.2049 21 1 3.4660 -10.4225 -3.7252 22 1 4.1982 -8.1488 -4.1431 23 6 4.3718 -2.9140 -0.4058 24 6 4.8051 -1.4970 -0.0044 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6241 -2.7959 -0.9986 29 1 1.1204 -2.6606 0.7060 30 1 5.7962 -5.1192 0.2494 31 1 4.9661 -4.3702 1.6343 32 1 5.4827 -6.0713 1.7203 33 1 4.0737 -7.7248 1.0386 34 1 2.4556 -7.3162 0.4197 35 1 3.1445 -10.6381 -1.0132 36 1 5.1905 -3.6100 -0.2228 37 1 4.1100 -2.9296 -1.4637 38 1 5.2483 -1.5146 0.9912 39 1 5.5305 -1.1174 -0.7240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335286269.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:03 Heat of formation + Delta-G solvation = 41.141851 kcal Electronic energy + Delta-G solvation = -22038.672455 eV Core-core repulsion = 18789.704998 eV Total energy + Delta-G solvation = -3248.967457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.35690 -39.78929 -36.69811 -35.23882 -34.14748 -32.77322 -31.58391 -30.50620 -28.02206 -27.42560 -26.20057 -24.95311 -23.30375 -22.52366 -21.36561 -19.92433 -18.61386 -17.31041 -16.68073 -16.62506 -15.98592 -15.55596 -15.01343 -14.89827 -14.44776 -14.15075 -14.07853 -13.92248 -13.23752 -13.12082 -12.78709 -12.61612 -12.37114 -12.29322 -12.14953 -11.85758 -11.53224 -11.34682 -11.27545 -11.08647 -10.86725 -10.67263 -10.35864 -10.26205 -10.12219 -9.76082 -9.17904 -9.00775 -8.54141 -7.86988 -6.15449 -4.20809 1.76207 2.37417 2.80787 3.05563 3.22853 3.30304 3.33829 3.64012 4.02114 4.23870 4.31184 4.37758 4.48776 4.53097 4.79802 4.93743 5.04680 5.10166 5.20350 5.22609 5.24621 5.42459 5.43266 5.50986 5.54948 5.63236 5.73781 5.75729 5.89680 5.95317 6.08306 6.15090 6.80660 6.85009 7.26366 7.33846 7.79512 8.09164 8.15560 8.69393 8.70290 8.86254 9.44769 10.92763 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028160 B = 0.004188 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.085724 B = 6683.988695 C = 6880.082149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.177 3.823 3 N -0.304 5.304 4 N -0.295 5.295 5 C 0.175 3.825 6 N -0.467 5.467 7 C 0.124 3.876 8 C -0.122 4.122 9 H 0.103 0.897 10 C 0.515 3.485 11 O -0.539 6.539 12 N -0.595 5.595 13 C 0.079 3.921 14 C 0.245 3.755 15 C -0.529 4.529 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.132 4.132 24 C -0.030 4.030 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.034 0.966 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.686 13.750 4.260 14.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.091 4.091 3 N -0.145 5.145 4 N -0.135 5.135 5 C -0.093 4.093 6 N -0.157 5.157 7 C 0.001 3.999 8 C -0.144 4.144 9 H 0.121 0.879 10 C 0.300 3.700 11 O -0.416 6.416 12 N -0.326 5.326 13 C -0.065 4.065 14 C 0.126 3.874 15 C -0.568 4.568 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.170 4.170 24 C -0.070 4.070 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.476 14.766 4.041 15.317 hybrid contribution -0.047 -1.771 -0.906 1.990 sum 0.429 12.995 3.135 13.375 Atomic orbital electron populations 1.20215 0.83784 1.04631 1.04017 1.24640 0.97098 0.82818 1.04518 1.74447 0.96169 1.23784 1.20116 1.74013 1.12318 1.08134 1.19034 1.24742 0.87251 0.92486 1.04837 1.46063 1.06962 1.08733 1.53969 1.21816 0.97995 0.74761 1.05339 1.21612 0.95742 0.94542 1.02490 0.87858 1.19748 0.84830 0.86127 0.79277 1.90704 1.24528 1.81455 1.44948 1.48111 1.13776 1.09398 1.61289 1.21840 0.86237 1.00068 0.98331 1.19376 0.98362 0.72855 0.96804 1.21379 1.41348 0.94959 0.99103 0.92424 1.24929 0.95004 0.96338 0.97730 1.69923 1.43814 1.03385 1.36113 0.86493 0.78420 0.78287 0.84215 1.20554 1.21024 1.19898 1.22036 0.98068 0.96220 1.00721 1.20248 0.91094 0.91292 1.04324 0.89644 0.88768 0.90167 0.87814 0.88027 0.92450 0.92326 0.91047 0.94758 0.93725 0.92596 0.87605 0.90298 0.88554 0.87881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.28 36.00 0.37 -0.22 16 2 C 0.18 2.32 8.07 -155.45 -1.25 1.07 16 3 N -0.30 -4.86 12.23 32.70 0.40 -4.46 16 4 N -0.30 -4.75 12.21 32.76 0.40 -4.35 16 5 C 0.17 2.35 7.75 -155.30 -1.20 1.14 16 6 N -0.47 -6.02 3.11 -110.86 -0.35 -6.37 16 7 C 0.12 1.52 5.46 -4.01 -0.02 1.50 16 8 C -0.12 -1.52 1.73 -91.54 -0.16 -1.68 16 9 H 0.10 1.11 7.37 -51.93 -0.38 0.72 16 10 C 0.52 9.22 7.07 -10.99 -0.08 9.14 16 11 O -0.54 -11.94 15.41 5.55 0.09 -11.85 16 12 N -0.59 -11.09 2.86 -182.95 -0.52 -11.61 16 13 C 0.08 1.04 8.86 59.85 0.53 1.57 16 14 C 0.24 5.93 5.20 -5.19 -0.03 5.91 16 15 C -0.53 -14.14 9.39 -34.44 -0.32 -14.46 16 16 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 19 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.13 -1.45 4.89 -26.39 -0.13 -1.58 16 24 C -0.03 -0.30 6.34 -27.57 -0.17 -0.47 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 28 H 0.10 1.38 7.79 -51.93 -0.40 0.98 16 29 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 0.71 6.79 -51.93 -0.35 0.36 16 31 H 0.06 0.57 6.10 -51.93 -0.32 0.26 16 32 H 0.07 0.93 7.89 -51.93 -0.41 0.52 16 33 H 0.03 0.84 7.89 -51.93 -0.41 0.43 16 34 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.11 1.08 4.44 -51.93 -0.23 0.85 16 37 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 319.14 15.07 4.81 4.81 Total: -1.00 -34.23 319.14 -7.41 -41.65 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -5.39 Total: -2.54 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -2.57 Total: 3.53 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.67 Total: -51.58 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.23 -7.41 -41.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335286269.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.788 kcal (2) G-P(sol) polarization free energy of solvation -34.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds