Wall clock time and date at job start Tue Mar 31 2020 00:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30832 * 126.46799 * 2 1 4 4 N 1.28915 * 109.74154 * 179.97438 * 3 2 1 5 5 C 1.29844 * 109.47687 * 359.97438 * 4 3 2 6 6 N 1.34699 * 126.46031 * 180.02562 * 2 1 3 7 7 C 1.46261 * 128.84767 * 0.14678 * 6 2 1 8 8 C 1.53327 * 108.72680 * 162.91303 * 7 6 2 9 9 H 1.08998 * 109.45133 * 290.29264 * 8 7 6 10 10 C 1.50692 * 109.45294 * 170.33138 * 8 7 6 11 11 O 1.21283 * 119.99967 * 328.73176 * 10 8 7 12 12 N 1.34773 * 120.00009 * 148.72909 * 10 8 7 13 13 C 1.46503 * 120.00092 * 183.90281 * 12 10 8 14 14 C 1.46497 * 119.99835 * 3.90691 * 12 10 8 15 15 C 1.50697 * 109.47534 * 84.15582 * 14 12 10 16 16 H 1.08001 * 119.99642 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00416 * 179.72568 * 15 14 12 18 18 N 1.31516 * 120.00148 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99701 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47474 * 90.00316 * 19 17 15 21 21 H 1.48504 * 109.47173 * 209.99914 * 19 17 15 22 22 H 1.48503 * 109.47372 * 330.00008 * 19 17 15 23 23 C 1.53143 * 109.55623 * 50.30926 * 8 7 6 24 24 C 1.50799 * 128.52383 * 180.16294 * 5 4 3 25 25 H 1.09006 * 109.46769 * 270.00066 * 1 2 3 26 26 H 1.09003 * 109.46299 * 29.99270 * 1 2 3 27 27 H 1.08993 * 109.47311 * 149.99516 * 1 2 3 28 28 H 1.09002 * 109.59504 * 43.14553 * 7 6 2 29 29 H 1.09001 * 109.59561 * 282.68630 * 7 6 2 30 30 H 1.09006 * 109.47068 * 275.16914 * 13 12 10 31 31 H 1.09001 * 109.47227 * 35.16629 * 13 12 10 32 32 H 1.09001 * 109.47146 * 155.16961 * 13 12 10 33 33 H 1.09003 * 109.47240 * 324.14926 * 14 12 10 34 34 H 1.09009 * 109.47046 * 204.15311 * 14 12 10 35 35 H 0.96999 * 119.99495 * 180.02562 * 18 17 15 36 36 H 1.09004 * 109.50201 * 50.50284 * 23 8 7 37 37 H 1.08998 * 109.49542 * 170.59860 * 23 8 7 38 38 H 1.09004 * 109.72482 * 283.73650 * 24 5 4 39 39 H 1.09007 * 109.72854 * 44.36464 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0521 0.0000 4 7 3.5193 0.6811 0.0005 5 6 3.5816 -0.6158 0.0015 6 7 2.3075 -1.0833 -0.0005 7 6 1.9366 -2.4981 -0.0040 8 6 3.1552 -3.3255 -0.4298 9 1 3.3631 -3.1488 -1.4851 10 6 2.8689 -4.7889 -0.2127 11 8 2.1376 -5.1363 0.6903 12 7 3.4255 -5.7118 -1.0220 13 6 3.0805 -7.1270 -0.8654 14 6 4.3755 -5.2997 -2.0583 15 6 5.7526 -5.1793 -1.4582 16 1 5.9048 -5.3884 -0.4096 17 6 6.8191 -4.8072 -2.2488 18 7 8.0208 -4.7017 -1.7249 19 14 6.5571 -4.4531 -4.0641 20 1 6.2396 -3.0140 -4.2469 21 1 7.7929 -4.7867 -4.8169 22 1 5.4307 -5.2769 -4.5717 23 6 4.3712 -2.9142 0.4054 24 6 4.8051 -1.4974 0.0057 25 1 -0.3633 0.0000 1.0277 26 1 -0.3632 0.8901 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.1206 -2.6603 -0.7083 29 1 1.6236 -2.7965 0.9965 30 1 3.7103 -7.5713 -0.0946 31 1 2.0337 -7.2158 -0.5750 32 1 3.2410 -7.6467 -1.8100 33 1 4.0718 -4.3360 -2.4672 34 1 4.3900 -6.0440 -2.8546 35 1 8.7710 -4.4396 -2.2812 36 1 4.1084 -2.9301 1.4631 37 1 5.1900 -3.6102 0.2230 38 1 5.2490 -1.5153 -0.9897 39 1 5.5302 -1.1169 0.7252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335286270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:06 Heat of formation + Delta-G solvation = 39.051904 kcal Electronic energy + Delta-G solvation = -22577.726173 eV Core-core repulsion = 19328.668089 eV Total energy + Delta-G solvation = -3249.058084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.12518 -39.76532 -36.52967 -35.36499 -33.91246 -32.68705 -31.45067 -30.33033 -28.61009 -27.23416 -26.63260 -24.28383 -22.82704 -22.65299 -21.16235 -19.76460 -18.35341 -17.25822 -17.08653 -16.47931 -16.07820 -15.59167 -14.91768 -14.63025 -14.20732 -13.95058 -13.84441 -13.74484 -13.20558 -13.09732 -12.69001 -12.63763 -12.53244 -12.28006 -12.05324 -11.75046 -11.68415 -11.29954 -11.04142 -10.96317 -10.75884 -10.64028 -10.40109 -10.13512 -9.91649 -9.73051 -9.36355 -8.86099 -8.76044 -8.00894 -6.36872 -4.39919 1.98617 2.55846 2.98266 3.04425 3.06886 3.13772 3.18213 3.57330 4.12820 4.32702 4.48492 4.60244 4.71046 4.82280 4.92346 4.97433 5.26848 5.29907 5.33265 5.39951 5.54062 5.63266 5.70284 5.78649 5.87316 5.89410 6.03862 6.16376 6.19393 6.24239 6.30630 6.41182 6.47343 6.66719 7.03336 7.06190 7.25268 7.85222 8.19212 8.56590 8.66999 8.93122 9.21069 10.74560 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.006714 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.479553 B = 4169.512461 C = 5152.702428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.304 5.304 4 N -0.299 5.299 5 C 0.186 3.814 6 N -0.466 5.466 7 C 0.119 3.881 8 C -0.115 4.115 9 H 0.107 0.893 10 C 0.530 3.470 11 O -0.568 6.568 12 N -0.590 5.590 13 C 0.094 3.906 14 C 0.204 3.796 15 C -0.546 4.546 16 H 0.082 0.918 17 C 0.082 3.918 18 N -0.882 5.882 19 Si 0.866 3.134 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.265 1.265 23 C -0.119 4.119 24 C -0.029 4.029 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.029 0.971 34 H 0.038 0.962 35 H 0.269 0.731 36 H 0.066 0.934 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.641 1.672 0.147 11.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.100 4.100 3 N -0.145 5.145 4 N -0.138 5.138 5 C -0.081 4.081 6 N -0.157 5.157 7 C -0.004 4.004 8 C -0.137 4.137 9 H 0.125 0.875 10 C 0.317 3.683 11 O -0.448 6.448 12 N -0.319 5.319 13 C -0.049 4.049 14 C 0.083 3.917 15 C -0.584 4.584 16 H 0.100 0.900 17 C -0.123 4.123 18 N -0.519 5.519 19 Si 0.692 3.308 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.190 1.190 23 C -0.157 4.157 24 C -0.069 4.069 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.146 0.854 38 H 0.120 0.880 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.395 2.945 0.538 11.781 hybrid contribution -0.225 -1.214 -1.148 1.686 sum -11.620 1.731 -0.610 11.764 Atomic orbital electron populations 1.20156 0.84040 1.04200 1.03816 1.24568 0.96941 0.83049 1.05488 1.74413 0.96343 1.23851 1.19911 1.74034 1.11976 1.08275 1.19498 1.25014 0.87353 0.92405 1.03343 1.45977 1.07069 1.08406 1.54280 1.21880 0.98059 0.75715 1.04735 1.21524 0.95609 0.92670 1.03854 0.87520 1.19847 0.79662 0.87261 0.81518 1.90628 1.39831 1.82303 1.32087 1.47819 1.43095 1.06568 1.34426 1.21511 1.00263 0.81396 1.01693 1.19961 0.88898 0.95836 0.87000 1.21273 0.90008 1.48710 0.98426 0.89968 1.24829 0.94921 0.94377 0.98140 1.69865 0.99634 1.45911 1.36441 0.87013 0.78491 0.79519 0.85777 1.19654 1.20699 1.19008 1.21821 0.98450 0.97022 0.98405 1.20256 0.90409 0.91146 1.05054 0.89797 0.88943 0.90605 0.88953 0.87861 0.92844 0.91954 0.91358 0.95378 0.94422 0.92083 0.91569 0.85417 0.88012 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.29 36.01 0.37 -0.24 16 2 C 0.17 2.49 8.07 -155.45 -1.25 1.23 16 3 N -0.30 -5.52 12.23 32.70 0.40 -5.12 16 4 N -0.30 -5.72 12.21 32.76 0.40 -5.32 16 5 C 0.19 3.20 7.75 -155.30 -1.20 1.99 16 6 N -0.47 -7.13 3.11 -110.85 -0.35 -7.47 16 7 C 0.12 1.64 5.83 -4.00 -0.02 1.61 16 8 C -0.12 -1.82 1.92 -91.53 -0.18 -2.00 16 9 H 0.11 1.71 5.91 -51.93 -0.31 1.41 16 10 C 0.53 9.44 6.64 -10.99 -0.07 9.37 16 11 O -0.57 -11.04 15.71 5.55 0.09 -10.96 16 12 N -0.59 -10.67 2.87 -182.95 -0.53 -11.19 16 13 C 0.09 1.48 10.39 59.85 0.62 2.10 16 14 C 0.20 3.99 4.07 -5.20 -0.02 3.97 16 15 C -0.55 -12.71 8.00 -34.44 -0.28 -12.98 16 16 H 0.08 2.15 7.39 -52.49 -0.39 1.76 16 17 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 18 N -0.88 -23.52 13.96 55.43 0.77 -22.75 16 19 Si 0.87 18.38 27.47 -169.99 -4.67 13.71 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.27 -5.33 6.53 56.52 0.37 -4.96 16 23 C -0.12 -1.95 5.19 -26.41 -0.14 -2.09 16 24 C -0.03 -0.46 6.34 -27.59 -0.17 -0.64 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.08 0.60 7.76 -51.93 -0.40 0.19 16 28 H 0.09 1.07 7.85 -51.93 -0.41 0.66 16 29 H 0.10 1.43 7.52 -51.93 -0.39 1.04 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.91 7.64 -51.93 -0.40 0.51 16 32 H 0.07 0.94 7.79 -51.93 -0.40 0.53 16 33 H 0.03 0.53 5.40 -51.93 -0.28 0.25 16 34 H 0.04 0.73 6.82 -51.92 -0.35 0.38 16 35 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 36 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 37 H 0.13 2.45 5.32 -51.93 -0.28 2.17 16 38 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 39 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 314.80 15.07 4.74 4.74 Total: -1.00 -29.81 314.80 -6.89 -36.70 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.31 Total: 3.41 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -2.44 Total: 4.25 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.70 Total: -51.85 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -4.67 Total: 13.71 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.81 -6.89 -36.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335286270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.751 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds