Wall clock time and date at job start Tue Mar 31 2020 00:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30832 * 126.46799 * 2 1 4 4 N 1.28915 * 109.74154 * 179.97438 * 3 2 1 5 5 C 1.29844 * 109.47687 * 359.97438 * 4 3 2 6 6 N 1.34699 * 126.46031 * 180.02562 * 2 1 3 7 7 C 1.46261 * 128.84767 * 0.14678 * 6 2 1 8 8 C 1.53327 * 108.72680 * 162.91303 * 7 6 2 9 9 H 1.08998 * 109.45133 * 290.29264 * 8 7 6 10 10 C 1.50692 * 109.45294 * 170.33138 * 8 7 6 11 11 O 1.21283 * 119.99967 * 328.73176 * 10 8 7 12 12 N 1.34773 * 120.00009 * 148.72909 * 10 8 7 13 13 C 1.46503 * 120.00092 * 183.90281 * 12 10 8 14 14 C 1.46497 * 119.99835 * 3.90691 * 12 10 8 15 15 C 1.50697 * 109.47534 * 84.15582 * 14 12 10 16 16 H 1.08001 * 119.99642 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00416 * 179.72568 * 15 14 12 18 18 N 1.31516 * 120.00148 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99701 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47474 * 90.00316 * 19 17 15 21 21 H 1.48504 * 109.47173 * 209.99914 * 19 17 15 22 22 H 1.48503 * 109.47372 * 330.00008 * 19 17 15 23 23 C 1.53143 * 109.55623 * 50.30926 * 8 7 6 24 24 C 1.50799 * 128.52383 * 180.16294 * 5 4 3 25 25 H 1.09006 * 109.46769 * 270.00066 * 1 2 3 26 26 H 1.09003 * 109.46299 * 29.99270 * 1 2 3 27 27 H 1.08993 * 109.47311 * 149.99516 * 1 2 3 28 28 H 1.09002 * 109.59504 * 43.14553 * 7 6 2 29 29 H 1.09001 * 109.59561 * 282.68630 * 7 6 2 30 30 H 1.09006 * 109.47068 * 275.16914 * 13 12 10 31 31 H 1.09001 * 109.47227 * 35.16629 * 13 12 10 32 32 H 1.09001 * 109.47146 * 155.16961 * 13 12 10 33 33 H 1.09003 * 109.47240 * 324.14926 * 14 12 10 34 34 H 1.09009 * 109.47046 * 204.15311 * 14 12 10 35 35 H 0.96999 * 119.99495 * 180.02562 * 18 17 15 36 36 H 1.09004 * 109.50201 * 50.50284 * 23 8 7 37 37 H 1.08998 * 109.49542 * 170.59860 * 23 8 7 38 38 H 1.09004 * 109.72482 * 283.73650 * 24 5 4 39 39 H 1.09007 * 109.72854 * 44.36464 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0521 0.0000 4 7 3.5193 0.6811 0.0005 5 6 3.5816 -0.6158 0.0015 6 7 2.3075 -1.0833 -0.0005 7 6 1.9366 -2.4981 -0.0040 8 6 3.1552 -3.3255 -0.4298 9 1 3.3631 -3.1488 -1.4851 10 6 2.8689 -4.7889 -0.2127 11 8 2.1376 -5.1363 0.6903 12 7 3.4255 -5.7118 -1.0220 13 6 3.0805 -7.1270 -0.8654 14 6 4.3755 -5.2997 -2.0583 15 6 5.7526 -5.1793 -1.4582 16 1 5.9048 -5.3884 -0.4096 17 6 6.8191 -4.8072 -2.2488 18 7 8.0208 -4.7017 -1.7249 19 14 6.5571 -4.4531 -4.0641 20 1 6.2396 -3.0140 -4.2469 21 1 7.7929 -4.7867 -4.8169 22 1 5.4307 -5.2769 -4.5717 23 6 4.3712 -2.9142 0.4054 24 6 4.8051 -1.4974 0.0057 25 1 -0.3633 0.0000 1.0277 26 1 -0.3632 0.8901 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.1206 -2.6603 -0.7083 29 1 1.6236 -2.7965 0.9965 30 1 3.7103 -7.5713 -0.0946 31 1 2.0337 -7.2158 -0.5750 32 1 3.2410 -7.6467 -1.8100 33 1 4.0718 -4.3360 -2.4672 34 1 4.3900 -6.0440 -2.8546 35 1 8.7710 -4.4396 -2.2812 36 1 4.1084 -2.9301 1.4631 37 1 5.1900 -3.6102 0.2230 38 1 5.2490 -1.5153 -0.9897 39 1 5.5302 -1.1169 0.7252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335286270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:05 Heat of formation + Delta-G solvation = 21.417019 kcal Electronic energy + Delta-G solvation = -22578.490879 eV Core-core repulsion = 19328.668089 eV Total energy + Delta-G solvation = -3249.822790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.37015 -41.17505 -37.83180 -36.88572 -35.11795 -34.50119 -32.64709 -31.48036 -30.24914 -28.35262 -27.96391 -25.59356 -24.41976 -24.04699 -22.33933 -21.05783 -19.77093 -19.04013 -18.44311 -17.67984 -17.38996 -17.02222 -16.45547 -15.89892 -15.75854 -15.23324 -15.08239 -14.89635 -14.62319 -14.33530 -13.97997 -13.85100 -13.75022 -13.44159 -13.34435 -13.15254 -13.05622 -12.63926 -12.59477 -12.43790 -12.14469 -12.02865 -11.98831 -11.56564 -11.38493 -11.12761 -10.81695 -10.70398 -10.02028 -9.50384 -8.25773 -6.31460 0.79126 1.37026 1.40738 1.44291 1.50331 1.57231 1.75807 2.22764 2.35738 3.07325 3.14976 3.32528 3.33198 3.56564 3.60392 3.90061 4.06586 4.12318 4.21633 4.31552 4.48408 4.53094 4.64290 4.65201 4.68161 4.73628 4.83243 4.85537 4.94759 4.96088 5.01700 5.03299 5.20037 5.24835 5.45935 5.60862 5.88290 6.19595 6.51197 6.73350 7.14809 7.33709 7.66422 8.88933 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.006714 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.479553 B = 4169.512461 C = 5152.702428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.182 3.818 3 N -0.344 5.344 4 N -0.332 5.332 5 C 0.177 3.823 6 N -0.467 5.467 7 C 0.126 3.874 8 C -0.111 4.111 9 H 0.108 0.892 10 C 0.530 3.470 11 O -0.583 6.583 12 N -0.596 5.596 13 C 0.090 3.910 14 C 0.209 3.791 15 C -0.531 4.531 16 H 0.042 0.958 17 C 0.032 3.968 18 N -0.934 5.934 19 Si 0.923 3.077 20 H -0.267 1.267 21 H -0.292 1.292 22 H -0.238 1.238 23 C -0.109 4.109 24 C -0.022 4.022 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.124 0.876 29 H 0.106 0.894 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.267 0.733 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.448 1.411 -1.172 14.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.086 4.086 3 N -0.184 5.184 4 N -0.171 5.171 5 C -0.092 4.092 6 N -0.157 5.157 7 C 0.004 3.996 8 C -0.133 4.133 9 H 0.126 0.874 10 C 0.318 3.682 11 O -0.465 6.465 12 N -0.325 5.325 13 C -0.053 4.053 14 C 0.087 3.913 15 C -0.570 4.570 16 H 0.060 0.940 17 C -0.169 4.169 18 N -0.573 5.573 19 Si 0.747 3.253 20 H -0.192 1.192 21 H -0.218 1.218 22 H -0.161 1.161 23 C -0.148 4.148 24 C -0.061 4.061 25 H 0.121 0.879 26 H 0.123 0.877 27 H 0.119 0.881 28 H 0.142 0.858 29 H 0.124 0.876 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.237 2.671 -0.779 14.506 hybrid contribution 0.615 -1.179 -0.623 1.469 sum -13.622 1.491 -1.401 13.775 Atomic orbital electron populations 1.20468 0.80151 1.06048 1.05572 1.25526 0.98787 0.81956 1.02348 1.74345 0.96382 1.25489 1.22210 1.73944 1.13097 1.09373 1.20652 1.25017 0.88279 0.92125 1.03755 1.46087 1.06467 1.09094 1.54081 1.21939 0.97593 0.74340 1.05749 1.21472 0.96223 0.91904 1.03692 0.87440 1.20096 0.79180 0.87902 0.81028 1.90619 1.40583 1.82729 1.32551 1.47894 1.42674 1.07712 1.34211 1.21673 1.00723 0.80221 1.02640 1.19830 0.86999 0.97099 0.87347 1.21381 0.92025 1.46958 0.96619 0.93985 1.25556 0.94474 0.94485 1.02350 1.70017 1.00767 1.48378 1.38102 0.86085 0.78790 0.79855 0.80583 1.19217 1.21783 1.16067 1.21623 0.97889 0.96502 0.98753 1.20154 0.90461 0.90725 1.04787 0.87922 0.87747 0.88092 0.85791 0.87609 0.93979 0.90720 0.89165 0.93699 0.93051 0.92405 0.91419 0.88461 0.88700 0.87550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.98 10.29 71.24 0.73 -0.24 16 2 C 0.18 4.99 8.07 138.14 1.11 6.10 16 3 N -0.34 -12.17 12.23 -50.46 -0.62 -12.78 16 4 N -0.33 -12.68 12.21 -50.28 -0.61 -13.29 16 5 C 0.18 5.96 7.75 138.14 1.07 7.03 16 6 N -0.47 -13.28 3.11 -504.62 -1.57 -14.85 16 7 C 0.13 3.09 5.83 86.53 0.50 3.60 16 8 C -0.11 -3.34 1.92 -11.39 -0.02 -3.36 16 9 H 0.11 3.21 5.91 -2.39 -0.01 3.20 16 10 C 0.53 17.94 6.64 87.66 0.58 18.53 16 11 O -0.58 -21.57 15.71 -3.04 -0.05 -21.62 16 12 N -0.60 -20.45 2.87 -851.12 -2.45 -22.89 16 13 C 0.09 2.62 10.39 127.77 1.33 3.95 16 14 C 0.21 7.74 4.07 85.63 0.35 8.09 16 15 C -0.53 -24.80 8.00 25.60 0.20 -24.59 16 16 H 0.04 2.28 7.39 -2.91 -0.02 2.25 16 17 C 0.03 1.55 5.47 84.65 0.46 2.01 16 18 N -0.93 -51.27 13.96 21.45 0.30 -50.97 16 19 Si 0.92 36.90 27.47 68.60 1.88 38.79 16 20 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 21 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.24 -8.38 6.53 99.48 0.65 -7.73 16 23 C -0.11 -3.59 5.19 30.80 0.16 -3.43 16 24 C -0.02 -0.70 6.34 30.04 0.19 -0.51 16 25 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.10 1.08 7.76 -2.39 -0.02 1.06 16 28 H 0.12 2.31 7.85 -2.39 -0.02 2.29 16 29 H 0.11 2.62 7.52 -2.39 -0.02 2.60 16 30 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.07 2.00 7.64 -2.39 -0.02 1.98 16 32 H 0.09 2.21 7.79 -2.39 -0.02 2.19 16 33 H 0.05 1.56 5.40 -2.39 -0.01 1.54 16 34 H 0.05 1.81 6.82 -2.38 -0.02 1.80 16 35 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 36 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 37 H 0.10 3.86 5.32 -2.39 -0.01 3.85 16 38 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 39 H 0.11 3.24 8.14 -2.38 -0.02 3.23 16 Total: -1.00 -65.55 314.80 4.57 -60.98 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 1.01 Total: 19.47 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: 6.68 Total: 17.17 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -4.95 Total: -114.79 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.05 Total: -21.62 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 1.88 Total: 38.79 kcal Total: -65.55 4.57 -60.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335286270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.395 kcal (2) G-P(sol) polarization free energy of solvation -65.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds