Wall clock time and date at job start Tue Mar 31 2020 00:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 126.46539 * 2 1 4 4 N 1.28913 * 109.73897 * 179.89489 * 3 2 1 5 5 C 1.29827 * 109.47763 * 0.43469 * 4 3 2 6 6 N 1.34693 * 126.46191 * 180.31139 * 2 1 3 7 7 C 1.46253 * 128.85115 * 359.85137 * 6 2 1 8 8 C 1.53320 * 108.73155 * 197.09490 * 7 6 2 9 9 H 1.08996 * 109.45075 * 69.71652 * 8 7 6 10 10 C 1.50700 * 109.44939 * 189.67533 * 8 7 6 11 11 O 1.21280 * 120.00444 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99791 * 180.02562 * 10 8 7 13 13 C 1.46498 * 120.00067 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47032 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.47121 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99759 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99986 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00124 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99957 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46973 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47206 * 119.99656 * 19 17 15 22 22 H 1.48507 * 109.46876 * 239.99714 * 19 17 15 23 23 C 1.53137 * 109.57988 * 309.70674 * 8 7 6 24 24 C 1.50809 * 128.52278 * 179.62058 * 5 4 3 25 25 H 1.09002 * 109.47152 * 269.68776 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.68877 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.68857 * 1 2 3 28 28 H 1.09011 * 109.59116 * 316.86612 * 7 6 2 29 29 H 1.09004 * 109.59791 * 77.16291 * 7 6 2 30 30 H 0.97006 * 119.99815 * 359.97438 * 12 10 8 31 31 H 1.08990 * 109.47229 * 299.99374 * 13 12 10 32 32 H 1.09002 * 109.47004 * 59.99796 * 13 12 10 33 33 H 1.09001 * 109.47268 * 299.99658 * 14 13 12 34 34 H 1.08993 * 109.47230 * 59.99997 * 14 13 12 35 35 H 0.96995 * 120.00182 * 179.97438 * 18 17 15 36 36 H 1.08996 * 109.50012 * 189.38579 * 23 8 7 37 37 H 1.09004 * 109.49857 * 309.45555 * 23 8 7 38 38 H 1.09001 * 109.72849 * 76.27344 * 24 5 4 39 39 H 1.08993 * 109.76752 * 315.61183 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6812 0.0022 5 6 3.5815 -0.6156 -0.0056 6 7 2.3075 -1.0833 -0.0059 7 6 1.9367 -2.4980 -0.0106 8 6 3.1552 -3.3278 0.4104 9 1 3.3629 -3.1574 1.4668 10 6 2.8690 -4.7900 0.1845 11 8 1.7979 -5.1355 -0.2674 12 7 3.8029 -5.7139 0.4857 13 6 3.5244 -7.1354 0.2667 14 6 4.7403 -7.9638 0.6866 15 6 4.4541 -9.4261 0.4607 16 1 3.5003 -9.7337 0.0583 17 6 5.4095 -10.3712 0.7687 18 7 6.5709 -9.9966 1.2592 19 14 5.0551 -12.1836 0.4880 20 1 3.6872 -12.3401 -0.0685 21 1 6.0456 -12.7394 -0.4686 22 1 5.1504 -12.9123 1.7785 23 6 4.3717 -2.9118 -0.4216 24 6 4.8051 -1.4971 -0.0143 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3633 0.8928 -0.5090 28 1 1.1205 -2.6643 0.6926 29 1 1.6212 -2.7899 -1.0123 30 1 4.6595 -5.4375 0.8476 31 1 2.6598 -7.4319 0.8603 32 1 3.3160 -7.3062 -0.7895 33 1 5.6048 -7.6672 0.0926 34 1 4.9491 -7.7931 1.7426 35 1 7.2429 -10.6614 1.4763 36 1 5.1904 -3.6088 -0.2427 37 1 4.1096 -2.9221 -1.4796 38 1 5.2489 -1.5205 0.9810 39 1 5.5306 -1.1136 -0.7317 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342279471.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:08 Heat of formation + Delta-G solvation = 18.255017 kcal Electronic energy + Delta-G solvation = -21127.905195 eV Core-core repulsion = 17877.945291 eV Total energy + Delta-G solvation = -3249.959905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.50329 -39.97870 -37.00143 -35.14993 -34.35272 -33.00045 -31.86438 -30.75687 -29.61891 -27.56814 -25.74491 -24.33665 -23.39902 -21.64926 -21.15582 -20.59588 -19.61270 -17.65009 -16.81496 -16.54870 -16.20710 -15.67406 -15.42543 -15.00788 -14.56609 -14.45277 -14.26073 -14.11751 -13.52064 -13.38407 -13.11926 -12.93187 -12.49061 -12.38862 -12.37187 -11.73892 -11.53213 -11.38680 -11.30471 -11.13712 -10.71897 -10.49514 -10.48503 -10.30125 -9.99277 -9.63067 -9.32737 -9.14725 -8.74837 -8.49797 -6.18913 -4.22294 1.61522 2.18859 2.61960 2.68437 3.21888 3.28119 3.31289 3.36706 3.81744 4.02522 4.19229 4.25926 4.31137 4.37621 4.64841 4.73749 4.88887 4.97467 5.03398 5.12384 5.18581 5.24446 5.31315 5.41953 5.46257 5.60620 5.67385 5.78579 6.00416 6.15036 6.17693 6.55775 6.65112 6.66599 7.37822 7.47816 7.71785 7.79037 8.14352 8.33271 8.57305 8.83729 9.43406 10.92599 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.043254 B = 0.002979 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.179867 B = 9397.105833 C = 9932.991970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.178 3.822 3 N -0.302 5.302 4 N -0.292 5.292 5 C 0.174 3.826 6 N -0.468 5.468 7 C 0.124 3.876 8 C -0.124 4.124 9 H 0.110 0.890 10 C 0.517 3.483 11 O -0.547 6.547 12 N -0.714 5.714 13 C 0.120 3.880 14 C 0.012 3.988 15 C -0.524 4.524 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.897 3.103 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.120 4.120 24 C -0.031 4.031 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.399 0.601 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.262 0.738 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.663 16.274 -1.334 17.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.090 4.090 3 N -0.143 5.143 4 N -0.132 5.132 5 C -0.094 4.094 6 N -0.160 5.160 7 C 0.001 3.999 8 C -0.146 4.146 9 H 0.128 0.872 10 C 0.301 3.699 11 O -0.426 6.426 12 N -0.363 5.363 13 C -0.001 4.001 14 C -0.025 4.025 15 C -0.562 4.562 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.158 4.158 24 C -0.071 4.071 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.234 0.766 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.856 17.360 -1.596 18.733 hybrid contribution -0.058 -2.283 0.147 2.289 sum -6.914 15.077 -1.449 16.650 Atomic orbital electron populations 1.20226 0.83706 1.04644 1.04088 1.24666 0.97118 0.82760 1.04412 1.74471 0.96149 1.23727 1.19949 1.74032 1.12296 1.08079 1.18769 1.24736 0.87139 0.92565 1.04947 1.46028 1.06990 1.08573 1.54362 1.21776 0.97795 0.75042 1.05265 1.21640 0.96087 0.93606 1.03295 0.87199 1.19948 0.84695 0.86733 0.78564 1.90710 1.24395 1.82043 1.45454 1.46322 1.17622 1.08380 1.64021 1.21802 1.01085 0.76602 1.00653 1.19333 0.91578 0.94398 0.97206 1.21061 1.01072 0.90725 1.43361 0.92187 1.24995 0.94957 0.99426 0.94860 1.69952 1.05599 1.34103 1.43521 0.86457 0.78509 0.84659 0.77955 1.19575 1.20870 1.20885 1.21760 0.97065 0.96405 1.00576 1.20241 0.91148 0.90996 1.04704 0.89569 0.90229 0.88680 0.87925 0.87885 0.76638 0.92331 0.92297 0.95861 0.95898 0.92801 0.88534 0.90150 0.88260 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.29 36.01 0.37 -0.11 16 2 C 0.18 2.05 8.07 -155.45 -1.25 0.79 16 3 N -0.30 -4.42 12.23 32.70 0.40 -4.02 16 4 N -0.29 -4.31 12.21 32.76 0.40 -3.91 16 5 C 0.17 2.04 7.75 -155.30 -1.20 0.84 16 6 N -0.47 -5.10 3.11 -110.86 -0.35 -5.44 16 7 C 0.12 1.18 5.46 -4.01 -0.02 1.16 16 8 C -0.12 -1.17 2.54 -91.53 -0.23 -1.40 16 9 H 0.11 0.90 8.12 -51.93 -0.42 0.48 16 10 C 0.52 6.99 7.15 -10.98 -0.08 6.91 16 11 O -0.55 -9.37 15.83 5.56 0.09 -9.28 16 12 N -0.71 -10.38 5.38 -60.30 -0.32 -10.70 16 13 C 0.12 2.30 5.61 -4.04 -0.02 2.27 16 14 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 15 C -0.52 -13.83 9.11 -34.44 -0.31 -14.14 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 19 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.12 -0.96 5.22 -26.42 -0.14 -1.10 16 24 C -0.03 -0.25 6.34 -27.59 -0.17 -0.43 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.10 0.89 8.14 -51.92 -0.42 0.46 16 29 H 0.10 1.03 7.80 -51.93 -0.40 0.62 16 30 H 0.40 4.86 7.80 -40.82 -0.32 4.54 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.10 0.68 7.32 -51.93 -0.38 0.30 16 37 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 327.50 15.07 4.94 4.94 Total: -1.00 -33.38 327.50 -8.15 -41.53 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.71 Total: -0.78 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -3.31 Total: -3.55 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.87 Total: -48.47 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.38 -8.15 -41.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342279471.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.784 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds