Wall clock time and date at job start Tue Mar 31 2020 00:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 126.46539 * 2 1 4 4 N 1.28913 * 109.73897 * 179.89489 * 3 2 1 5 5 C 1.29827 * 109.47763 * 0.43469 * 4 3 2 6 6 N 1.34693 * 126.46191 * 180.31139 * 2 1 3 7 7 C 1.46253 * 128.85115 * 359.85137 * 6 2 1 8 8 C 1.53320 * 108.73155 * 197.09490 * 7 6 2 9 9 H 1.08996 * 109.45075 * 69.71652 * 8 7 6 10 10 C 1.50700 * 109.44939 * 189.67533 * 8 7 6 11 11 O 1.21280 * 120.00444 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99791 * 180.02562 * 10 8 7 13 13 C 1.46498 * 120.00067 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47032 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.47121 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99759 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99986 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00124 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99957 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46973 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47206 * 119.99656 * 19 17 15 22 22 H 1.48507 * 109.46876 * 239.99714 * 19 17 15 23 23 C 1.53137 * 109.57988 * 309.70674 * 8 7 6 24 24 C 1.50809 * 128.52278 * 179.62058 * 5 4 3 25 25 H 1.09002 * 109.47152 * 269.68776 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.68877 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.68857 * 1 2 3 28 28 H 1.09011 * 109.59116 * 316.86612 * 7 6 2 29 29 H 1.09004 * 109.59791 * 77.16291 * 7 6 2 30 30 H 0.97006 * 119.99815 * 359.97438 * 12 10 8 31 31 H 1.08990 * 109.47229 * 299.99374 * 13 12 10 32 32 H 1.09002 * 109.47004 * 59.99796 * 13 12 10 33 33 H 1.09001 * 109.47268 * 299.99658 * 14 13 12 34 34 H 1.08993 * 109.47230 * 59.99997 * 14 13 12 35 35 H 0.96995 * 120.00182 * 179.97438 * 18 17 15 36 36 H 1.08996 * 109.50012 * 189.38579 * 23 8 7 37 37 H 1.09004 * 109.49857 * 309.45555 * 23 8 7 38 38 H 1.09001 * 109.72849 * 76.27344 * 24 5 4 39 39 H 1.08993 * 109.76752 * 315.61183 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6812 0.0022 5 6 3.5815 -0.6156 -0.0056 6 7 2.3075 -1.0833 -0.0059 7 6 1.9367 -2.4980 -0.0106 8 6 3.1552 -3.3278 0.4104 9 1 3.3629 -3.1574 1.4668 10 6 2.8690 -4.7900 0.1845 11 8 1.7979 -5.1355 -0.2674 12 7 3.8029 -5.7139 0.4857 13 6 3.5244 -7.1354 0.2667 14 6 4.7403 -7.9638 0.6866 15 6 4.4541 -9.4261 0.4607 16 1 3.5003 -9.7337 0.0583 17 6 5.4095 -10.3712 0.7687 18 7 6.5709 -9.9966 1.2592 19 14 5.0551 -12.1836 0.4880 20 1 3.6872 -12.3401 -0.0685 21 1 6.0456 -12.7394 -0.4686 22 1 5.1504 -12.9123 1.7785 23 6 4.3717 -2.9118 -0.4216 24 6 4.8051 -1.4971 -0.0143 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3633 0.8928 -0.5090 28 1 1.1205 -2.6643 0.6926 29 1 1.6212 -2.7899 -1.0123 30 1 4.6595 -5.4375 0.8476 31 1 2.6598 -7.4319 0.8603 32 1 3.3160 -7.3062 -0.7895 33 1 5.6048 -7.6672 0.0926 34 1 4.9491 -7.7931 1.7426 35 1 7.2429 -10.6614 1.4763 36 1 5.1904 -3.6088 -0.2427 37 1 4.1096 -2.9221 -1.4796 38 1 5.2489 -1.5205 0.9810 39 1 5.5306 -1.1136 -0.7317 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342279471.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:08 Heat of formation + Delta-G solvation = -3.117649 kcal Electronic energy + Delta-G solvation = -21128.831984 eV Core-core repulsion = 17877.945291 eV Total energy + Delta-G solvation = -3250.886693 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.37722 -41.09265 -37.92944 -36.61779 -35.21618 -34.76725 -32.81159 -31.62527 -31.12247 -28.33658 -27.17892 -25.59433 -24.27025 -22.93464 -22.39298 -21.66528 -20.50417 -18.75670 -18.34226 -17.64925 -17.22642 -16.81556 -16.59868 -16.41124 -15.95427 -15.40625 -15.12565 -14.93426 -14.69546 -14.47615 -14.28813 -13.92930 -13.50022 -13.24601 -13.20267 -13.17312 -12.95374 -12.64870 -12.51201 -12.30953 -12.18983 -12.07461 -11.65735 -11.43427 -11.37590 -11.15322 -10.85526 -10.60125 -10.03513 -10.02950 -8.23801 -6.33356 0.78709 1.35443 1.41054 1.43437 1.53196 1.55033 1.76221 2.20054 2.44038 3.05460 3.11787 3.25073 3.40860 3.53924 3.58362 3.91175 3.99405 4.12348 4.25008 4.32756 4.50185 4.52688 4.57291 4.62304 4.66368 4.83017 4.84579 4.88759 4.95628 5.00243 5.02860 5.22666 5.27623 5.49686 5.61262 5.80282 5.86659 6.17458 6.55842 6.80777 7.19283 7.36288 7.66391 8.87886 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.043254 B = 0.002979 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.179867 B = 9397.105833 C = 9932.991970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.180 3.820 3 N -0.346 5.346 4 N -0.334 5.334 5 C 0.174 3.826 6 N -0.469 5.469 7 C 0.126 3.874 8 C -0.111 4.111 9 H 0.132 0.868 10 C 0.522 3.478 11 O -0.582 6.582 12 N -0.710 5.710 13 C 0.140 3.860 14 C 0.021 3.979 15 C -0.545 4.545 16 H 0.058 0.942 17 C 0.008 3.992 18 N -0.925 5.925 19 Si 0.960 3.040 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.279 1.279 23 C -0.114 4.114 24 C -0.026 4.026 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.413 0.587 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.011 0.989 34 H 0.010 0.990 35 H 0.265 0.735 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.041 15.973 -1.197 17.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 N -0.186 5.186 4 N -0.173 5.173 5 C -0.095 4.095 6 N -0.160 5.160 7 C 0.004 3.996 8 C -0.132 4.132 9 H 0.150 0.850 10 C 0.309 3.691 11 O -0.462 6.462 12 N -0.360 5.360 13 C 0.017 3.983 14 C -0.016 4.016 15 C -0.583 4.583 16 H 0.076 0.924 17 C -0.190 4.190 18 N -0.565 5.565 19 Si 0.785 3.215 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.204 1.204 23 C -0.152 4.152 24 C -0.065 4.065 25 H 0.120 0.880 26 H 0.114 0.886 27 H 0.120 0.880 28 H 0.132 0.868 29 H 0.117 0.883 30 H 0.250 0.750 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.030 0.970 34 H 0.028 0.972 35 H 0.074 0.926 36 H 0.130 0.870 37 H 0.093 0.907 38 H 0.137 0.863 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.224 17.093 -1.454 18.614 hybrid contribution 0.031 -2.169 0.096 2.171 sum -7.193 14.924 -1.358 16.623 Atomic orbital electron populations 1.20433 0.80939 1.05760 1.05458 1.25393 0.98618 0.82266 1.02557 1.74381 0.96673 1.25452 1.22079 1.73935 1.12810 1.09812 1.20730 1.25363 0.88436 0.92270 1.03437 1.46118 1.06755 1.08858 1.54260 1.21812 0.98125 0.74264 1.05430 1.21552 0.96703 0.90092 1.04891 0.85046 1.20502 0.83569 0.88023 0.77048 1.90703 1.25843 1.82901 1.46803 1.46080 1.18749 1.06730 1.64480 1.21237 0.98698 0.78796 0.99585 1.19143 0.92679 0.93719 0.96074 1.21509 1.01037 0.92718 1.43082 0.92361 1.25813 0.94820 1.03749 0.94664 1.70045 1.06437 1.35524 1.44494 0.85466 0.78527 0.79531 0.77947 1.18975 1.20396 1.20427 1.21755 0.96806 0.96737 0.99938 1.20404 0.89935 0.89957 1.06250 0.87950 0.88635 0.88011 0.86766 0.88330 0.75029 0.93358 0.93277 0.97031 0.97211 0.92600 0.86972 0.90708 0.86280 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.29 71.24 0.73 -0.10 16 2 C 0.18 3.95 8.07 138.14 1.11 5.06 16 3 N -0.35 -10.08 12.23 -50.46 -0.62 -10.70 16 4 N -0.33 -9.77 12.21 -50.27 -0.61 -10.38 16 5 C 0.17 3.84 7.75 138.14 1.07 4.91 16 6 N -0.47 -9.45 3.11 -504.64 -1.57 -11.02 16 7 C 0.13 2.13 5.46 86.53 0.47 2.60 16 8 C -0.11 -1.80 2.54 -11.39 -0.03 -1.83 16 9 H 0.13 1.67 8.12 -2.39 -0.02 1.66 16 10 C 0.52 13.16 7.15 87.66 0.63 13.79 16 11 O -0.58 -19.17 15.83 -3.03 -0.05 -19.22 16 12 N -0.71 -19.52 5.38 -463.07 -2.49 -22.02 16 13 C 0.14 5.28 5.61 86.38 0.48 5.77 16 14 C 0.02 0.98 5.09 29.85 0.15 1.13 16 15 C -0.54 -28.76 9.11 25.60 0.23 -28.53 16 16 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 17 C 0.01 0.45 5.46 84.65 0.46 0.92 16 18 N -0.93 -52.03 13.29 21.45 0.28 -51.75 16 19 Si 0.96 41.95 29.54 68.60 2.03 43.97 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 23 C -0.11 -1.53 5.22 30.80 0.16 -1.37 16 24 C -0.03 -0.36 6.34 30.04 0.19 -0.17 16 25 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 0.88 8.04 -2.39 -0.02 0.87 16 27 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.10 1.80 7.80 -2.39 -0.02 1.78 16 30 H 0.41 9.20 7.80 -92.70 -0.72 8.47 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.27 14.05 8.31 -92.71 -0.77 13.27 16 36 H 0.11 1.21 7.32 -2.39 -0.02 1.19 16 37 H 0.07 1.13 8.12 -2.38 -0.02 1.11 16 38 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -72.41 327.50 2.98 -69.43 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.34 Total: 9.49 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 5.67 Total: 2.18 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -5.01 Total: -105.86 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.05 Total: -19.22 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -72.41 2.98 -69.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342279471.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.315 kcal (2) G-P(sol) polarization free energy of solvation -72.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds