Wall clock time and date at job start Tue Mar 31 2020 01:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47099 * 2 1 4 4 H 1.09008 * 109.46872 * 304.99834 * 3 2 1 5 5 C 1.50701 * 109.47244 * 184.99978 * 3 2 1 6 6 H 1.08000 * 119.99923 * 239.99571 * 5 3 2 7 7 C 1.37881 * 119.99964 * 59.99902 * 5 3 2 8 8 N 1.31516 * 119.99728 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00055 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46820 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47100 * 119.99767 * 9 7 5 12 12 H 1.48495 * 109.47190 * 239.99712 * 9 7 5 13 13 N 1.46502 * 109.47564 * 64.99588 * 3 2 1 14 14 C 1.34770 * 120.00283 * 275.00279 * 13 3 2 15 15 O 1.21573 * 119.99874 * 359.97438 * 14 13 3 16 16 N 1.34771 * 120.00184 * 179.97438 * 14 13 3 17 17 C 1.39014 * 120.00440 * 180.02562 * 16 14 13 18 18 N 1.32924 * 120.51687 * 359.97438 * 17 16 14 19 19 C 1.31749 * 120.70269 * 179.97438 * 18 17 16 20 20 C 1.50694 * 119.09058 * 180.02562 * 19 18 17 21 21 N 1.31802 * 121.82402 * 0.02562 * 19 18 17 22 22 C 1.32505 * 120.99108 * 0.02562 * 21 19 18 23 23 C 1.38192 * 119.18794 * 359.97438 * 22 21 19 24 24 C 1.50704 * 120.83103 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.46984 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47270 * 299.99871 * 1 2 3 27 27 H 1.08993 * 109.47337 * 60.00242 * 1 2 3 28 28 H 1.08999 * 109.47061 * 239.99617 * 2 1 3 29 29 H 1.09007 * 109.46867 * 119.99475 * 2 1 3 30 30 H 0.97004 * 119.99678 * 180.02562 * 8 7 5 31 31 H 0.96996 * 119.99720 * 94.99947 * 13 3 2 32 32 H 0.96997 * 120.00410 * 0.02562 * 16 14 13 33 33 H 1.09001 * 109.47215 * 89.99875 * 20 19 18 34 34 H 1.09002 * 109.47253 * 210.00144 * 20 19 18 35 35 H 1.09005 * 109.47151 * 330.00360 * 20 19 18 36 36 H 1.08003 * 120.40445 * 179.97438 * 22 21 19 37 37 H 1.08995 * 109.46642 * 270.02103 * 24 23 22 38 38 H 1.08999 * 109.47224 * 30.02223 * 24 23 22 39 39 H 1.09005 * 109.46898 * 150.02121 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8800 -1.3812 10 1 6.5987 1.5453 -0.1936 11 1 6.4962 -0.5191 -1.4626 12 1 6.4000 1.6156 -2.6092 13 7 1.6524 2.0976 1.2517 14 6 0.4352 2.6645 1.3669 15 8 -0.3411 2.6326 0.4318 16 7 0.0784 3.2667 2.5186 17 6 -1.1774 3.8510 2.6375 18 7 -2.0342 3.8222 1.6217 19 6 -3.2254 4.3743 1.7307 20 6 -4.1683 4.3200 0.5564 21 7 -3.6154 4.9729 2.8383 22 6 -2.8168 5.0431 3.8933 23 6 -1.5578 4.4776 3.8244 24 6 -0.6192 4.5364 5.0020 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8293 -0.0610 -2.9499 31 1 2.2719 2.1232 1.9977 32 1 0.6978 3.2924 3.2645 33 1 -4.7762 3.4175 0.6200 34 1 -4.8164 5.1963 0.5699 35 1 -3.5943 4.3069 -0.3702 36 1 -3.1459 5.5363 4.7961 37 1 -0.0128 5.4399 4.9385 38 1 -1.1965 4.5504 5.9265 39 1 0.0306 3.6612 4.9928 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347758780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:11 Heat of formation + Delta-G solvation = 22.439521 kcal Electronic energy + Delta-G solvation = -21831.871214 eV Core-core repulsion = 18582.092763 eV Total energy + Delta-G solvation = -3249.778451 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.21767 -39.35528 -36.03530 -34.78153 -33.85662 -32.65664 -31.83332 -30.55079 -30.12032 -27.03187 -25.84611 -24.43373 -22.95948 -21.86743 -20.95969 -19.57555 -18.64122 -17.68136 -16.88489 -15.95438 -15.64755 -15.16115 -14.68032 -14.57467 -14.25890 -14.12723 -13.54972 -13.36887 -13.07197 -12.70188 -12.62855 -12.53278 -12.21892 -12.12834 -11.62984 -11.27645 -11.13294 -10.96930 -10.83092 -10.68714 -10.32600 -10.19779 -9.73630 -9.62851 -9.55570 -9.05610 -8.67061 -8.51733 -8.43646 -7.82521 -6.14607 -4.24044 0.99784 1.32736 2.80123 3.22029 3.30216 3.32421 3.68250 4.10598 4.11204 4.23423 4.32877 4.58415 4.78990 4.86348 5.08069 5.17341 5.35199 5.39778 5.63590 5.67775 5.71399 5.83511 5.99503 6.29681 6.41196 6.48543 6.62060 6.70728 6.84794 7.07093 7.18427 7.35552 7.37308 7.44317 7.62530 7.82863 7.92459 8.16616 8.36981 8.70368 8.82579 9.24025 9.44491 10.90803 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.004272 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.566840 B = 6552.013268 C = 7132.608394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.719 5.719 14 C 0.678 3.322 15 O -0.524 6.524 16 N -0.668 5.668 17 C 0.436 3.564 18 N -0.501 5.501 19 C 0.339 3.661 20 C -0.082 4.082 21 N -0.552 5.552 22 C 0.168 3.832 23 C -0.252 4.252 24 C -0.098 4.098 25 H 0.021 0.979 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.100 0.900 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.384 0.616 32 H 0.410 0.590 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.165 0.835 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.435 7.006 13.069 17.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.372 5.372 14 C 0.378 3.622 15 O -0.394 6.394 16 N -0.317 5.317 17 C 0.194 3.806 18 N -0.221 5.221 19 C 0.071 3.929 20 C -0.141 4.141 21 N -0.270 5.270 22 C 0.004 3.996 23 C -0.261 4.261 24 C -0.156 4.156 25 H 0.040 0.960 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.118 0.882 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.216 0.784 32 H 0.247 0.753 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.182 0.818 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.602 6.725 11.098 16.143 hybrid contribution 2.305 -0.057 1.449 2.723 sum -7.297 6.668 12.547 15.973 Atomic orbital electron populations 1.21810 0.98172 0.97894 1.01353 1.21963 0.92733 0.99812 1.02216 1.18742 0.94043 0.88878 0.79803 0.93151 1.21247 0.90592 1.39099 1.06351 0.92052 1.24877 0.98621 0.94790 0.95348 1.69909 1.35045 1.37520 1.09314 0.86392 0.84796 0.77771 0.78112 1.19790 1.20860 1.20872 1.45885 1.13061 1.58815 1.19389 1.16263 0.84089 0.79582 0.82311 1.91027 1.50767 1.61109 1.36527 1.43159 1.13989 1.57139 1.17403 1.18287 0.85795 0.87768 0.88798 1.68414 1.03294 1.21024 1.29380 1.23206 0.89288 0.87480 0.92929 1.20530 0.96661 1.03293 0.93570 1.68232 1.36863 1.20947 1.00956 1.22768 0.88223 0.92133 0.96503 1.20987 0.99829 1.08097 0.97196 1.20518 0.97906 1.02316 0.94845 0.96028 0.94405 0.93016 0.88223 0.95125 0.92564 0.78415 0.75329 0.89810 0.89959 0.89313 0.81803 0.90929 0.90783 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.29 7.12 2.24 -69.08 -0.15 6.97 16 4 H 0.05 1.46 7.58 -51.92 -0.39 1.07 16 5 C -0.53 -13.84 8.73 -34.44 -0.30 -14.14 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.41 11.29 55.43 0.63 -23.78 16 9 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 N -0.72 -14.59 5.03 -59.82 -0.30 -14.89 16 14 C 0.68 13.71 7.09 -86.93 -0.62 13.09 16 15 O -0.52 -12.59 11.77 5.30 0.06 -12.53 16 16 N -0.67 -10.40 5.31 -15.67 -0.08 -10.49 16 17 C 0.44 7.00 7.44 -154.42 -1.15 5.85 16 18 N -0.50 -9.23 7.93 -9.89 -0.08 -9.31 16 19 C 0.34 5.36 7.64 -157.23 -1.20 4.16 16 20 C -0.08 -1.04 10.32 36.00 0.37 -0.67 16 21 N -0.55 -7.86 10.33 -10.80 -0.11 -7.97 16 22 C 0.17 1.96 10.99 -17.28 -0.19 1.77 16 23 C -0.25 -3.03 5.93 -104.16 -0.62 -3.65 16 24 C -0.10 -0.76 9.65 36.01 0.35 -0.41 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.04 0.86 5.65 -51.93 -0.29 0.56 16 27 H 0.05 1.26 7.84 -51.93 -0.41 0.85 16 28 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.38 6.58 8.55 -40.82 -0.35 6.23 16 32 H 0.41 4.71 6.84 -40.82 -0.28 4.43 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.16 1.27 8.06 -52.48 -0.42 0.84 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.44 8.10 -51.93 -0.42 0.01 16 39 H 0.06 0.46 6.67 -51.93 -0.35 0.11 16 LS Contribution 321.95 15.07 4.85 4.85 Total: -1.00 -32.64 321.95 -8.79 -41.42 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.30 Total: 8.75 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -3.44 Total: 8.64 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: 0.05 Total: -66.44 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.06 Total: -12.53 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.64 -8.79 -41.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347758780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.865 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds