Wall clock time and date at job start Tue Mar 31 2020 01:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47099 * 2 1 4 4 H 1.09008 * 109.46872 * 304.99834 * 3 2 1 5 5 C 1.50701 * 109.47244 * 184.99978 * 3 2 1 6 6 H 1.08000 * 119.99923 * 239.99571 * 5 3 2 7 7 C 1.37881 * 119.99964 * 59.99902 * 5 3 2 8 8 N 1.31516 * 119.99728 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00055 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46820 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47100 * 119.99767 * 9 7 5 12 12 H 1.48495 * 109.47190 * 239.99712 * 9 7 5 13 13 N 1.46502 * 109.47564 * 64.99588 * 3 2 1 14 14 C 1.34770 * 120.00283 * 275.00279 * 13 3 2 15 15 O 1.21573 * 119.99874 * 359.97438 * 14 13 3 16 16 N 1.34771 * 120.00184 * 179.97438 * 14 13 3 17 17 C 1.39014 * 120.00440 * 180.02562 * 16 14 13 18 18 N 1.32924 * 120.51687 * 359.97438 * 17 16 14 19 19 C 1.31749 * 120.70269 * 179.97438 * 18 17 16 20 20 C 1.50694 * 119.09058 * 180.02562 * 19 18 17 21 21 N 1.31802 * 121.82402 * 0.02562 * 19 18 17 22 22 C 1.32505 * 120.99108 * 0.02562 * 21 19 18 23 23 C 1.38192 * 119.18794 * 359.97438 * 22 21 19 24 24 C 1.50704 * 120.83103 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.46984 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47270 * 299.99871 * 1 2 3 27 27 H 1.08993 * 109.47337 * 60.00242 * 1 2 3 28 28 H 1.08999 * 109.47061 * 239.99617 * 2 1 3 29 29 H 1.09007 * 109.46867 * 119.99475 * 2 1 3 30 30 H 0.97004 * 119.99678 * 180.02562 * 8 7 5 31 31 H 0.96996 * 119.99720 * 94.99947 * 13 3 2 32 32 H 0.96997 * 120.00410 * 0.02562 * 16 14 13 33 33 H 1.09001 * 109.47215 * 89.99875 * 20 19 18 34 34 H 1.09002 * 109.47253 * 210.00144 * 20 19 18 35 35 H 1.09005 * 109.47151 * 330.00360 * 20 19 18 36 36 H 1.08003 * 120.40445 * 179.97438 * 22 21 19 37 37 H 1.08995 * 109.46642 * 270.02103 * 24 23 22 38 38 H 1.08999 * 109.47224 * 30.02223 * 24 23 22 39 39 H 1.09005 * 109.46898 * 150.02121 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8800 -1.3812 10 1 6.5987 1.5453 -0.1936 11 1 6.4962 -0.5191 -1.4626 12 1 6.4000 1.6156 -2.6092 13 7 1.6524 2.0976 1.2517 14 6 0.4352 2.6645 1.3669 15 8 -0.3411 2.6326 0.4318 16 7 0.0784 3.2667 2.5186 17 6 -1.1774 3.8510 2.6375 18 7 -2.0342 3.8222 1.6217 19 6 -3.2254 4.3743 1.7307 20 6 -4.1683 4.3200 0.5564 21 7 -3.6154 4.9729 2.8383 22 6 -2.8168 5.0431 3.8933 23 6 -1.5578 4.4776 3.8244 24 6 -0.6192 4.5364 5.0020 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8293 -0.0610 -2.9499 31 1 2.2719 2.1232 1.9977 32 1 0.6978 3.2924 3.2645 33 1 -4.7762 3.4175 0.6200 34 1 -4.8164 5.1963 0.5699 35 1 -3.5943 4.3069 -0.3702 36 1 -3.1459 5.5363 4.7961 37 1 -0.0128 5.4399 4.9385 38 1 -1.1965 4.5504 5.9265 39 1 0.0306 3.6612 4.9928 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347758780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:09 Heat of formation + Delta-G solvation = 0.316076 kcal Electronic energy + Delta-G solvation = -21832.830558 eV Core-core repulsion = 18582.092763 eV Total energy + Delta-G solvation = -3250.737795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.37577 -40.85506 -37.57027 -36.33354 -34.95249 -34.40901 -33.40770 -32.20422 -31.05565 -28.95451 -26.73062 -25.77051 -24.76020 -22.95984 -22.49917 -21.40168 -20.15572 -18.99421 -18.30111 -17.59523 -17.09785 -16.84221 -16.08127 -15.94617 -15.57040 -15.24037 -15.04439 -14.56706 -14.38167 -14.11703 -14.04317 -13.57742 -13.26940 -13.19055 -13.17439 -13.12340 -12.85353 -12.71807 -12.42993 -12.17397 -12.06084 -11.74806 -11.58571 -11.20357 -11.03168 -10.83222 -10.54375 -9.91927 -9.74041 -9.40980 -8.15599 -6.32825 -0.06275 0.24654 1.43817 1.45332 1.50978 1.59019 2.24167 2.41933 2.89265 2.98460 3.14489 3.21873 3.52246 3.70008 3.99505 4.17101 4.44211 4.48829 4.55962 4.69381 4.72390 4.75619 4.82299 4.95156 4.96711 5.05464 5.18122 5.22264 5.27729 5.43702 5.48135 5.60441 5.64968 5.67012 5.82263 5.96269 6.16609 6.31760 6.75229 7.10361 7.33840 7.38673 7.72555 8.90241 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.004272 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.566840 B = 6552.013268 C = 7132.608394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.120 4.120 3 C 0.298 3.702 4 H -0.003 1.003 5 C -0.546 4.546 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.286 1.286 13 N -0.713 5.713 14 C 0.680 3.320 15 O -0.568 6.568 16 N -0.652 5.652 17 C 0.400 3.600 18 N -0.549 5.549 19 C 0.316 3.684 20 C -0.079 4.079 21 N -0.555 5.555 22 C 0.165 3.835 23 C -0.230 4.230 24 C -0.098 4.098 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.024 0.976 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.265 0.735 31 H 0.402 0.598 32 H 0.429 0.571 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.211 0.789 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.825 7.870 16.241 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.159 4.159 3 C 0.194 3.806 4 H 0.015 0.985 5 C -0.584 4.584 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.212 1.212 13 N -0.367 5.367 14 C 0.379 3.621 15 O -0.441 6.441 16 N -0.304 5.304 17 C 0.159 3.841 18 N -0.270 5.270 19 C 0.048 3.952 20 C -0.137 4.137 21 N -0.272 5.272 22 C 0.001 3.999 23 C -0.239 4.239 24 C -0.156 4.156 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.237 0.763 32 H 0.270 0.730 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.090 0.910 36 H 0.228 0.772 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.994 7.621 14.358 18.578 hybrid contribution 2.019 -0.243 0.544 2.105 sum -6.975 7.378 14.903 18.032 Atomic orbital electron populations 1.21612 0.97197 0.98715 0.99990 1.21806 0.93436 0.99301 1.01377 1.18277 0.93570 0.88720 0.80037 0.98464 1.21585 0.91140 1.38931 1.06782 0.90790 1.25764 1.03302 0.94371 0.94983 1.70064 1.37024 1.38344 1.09885 0.85305 0.79068 0.77795 0.78185 1.18312 1.20470 1.21213 1.45471 1.13785 1.58858 1.18634 1.16350 0.83389 0.79323 0.83020 1.91006 1.51922 1.62620 1.38601 1.42709 1.14642 1.56592 1.16465 1.18703 0.85638 0.89567 0.90181 1.68288 1.04755 1.22496 1.31503 1.23575 0.89128 0.88192 0.94302 1.20560 0.96375 1.04671 0.92080 1.68298 1.37384 1.20374 1.01153 1.23607 0.87748 0.91439 0.97120 1.21423 1.00457 1.05282 0.96722 1.20690 0.97656 1.03338 0.93899 0.93912 0.94419 0.95687 0.90850 0.93902 0.92601 0.76346 0.72987 0.89012 0.87845 0.91022 0.77201 0.89372 0.87895 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.51 71.98 0.61 -4.90 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.78 16 3 C 0.30 15.20 2.24 44.24 0.10 15.30 16 4 H 0.00 -0.16 7.58 -2.38 -0.02 -0.17 16 5 C -0.55 -28.39 8.73 25.60 0.22 -28.17 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.85 5.29 84.66 0.45 1.30 16 8 N -0.91 -52.10 11.29 21.45 0.24 -51.85 16 9 Si 0.97 41.51 29.54 68.60 2.03 43.54 16 10 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 11 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 13 N -0.71 -29.12 5.03 -461.43 -2.32 -31.44 16 14 C 0.68 27.96 7.09 179.06 1.27 29.23 16 15 O -0.57 -28.59 11.77 -3.95 -0.05 -28.64 16 16 N -0.65 -19.88 5.31 -321.77 -1.71 -21.59 16 17 C 0.40 12.56 7.44 132.99 0.99 13.55 16 18 N -0.55 -20.70 7.93 -185.21 -1.47 -22.17 16 19 C 0.32 10.04 7.64 138.76 1.06 11.10 16 20 C -0.08 -2.04 10.32 71.23 0.73 -1.31 16 21 N -0.55 -14.90 10.33 -188.08 -1.94 -16.85 16 22 C 0.16 3.33 10.99 84.58 0.93 4.26 16 23 C -0.23 -4.91 5.93 -19.57 -0.12 -5.03 16 24 C -0.10 -1.10 9.65 71.24 0.69 -0.41 16 25 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.04 1.74 5.65 -2.39 -0.01 1.72 16 27 H 0.02 1.26 7.84 -2.39 -0.02 1.24 16 28 H 0.07 4.06 5.95 -2.39 -0.01 4.05 16 29 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.40 13.34 8.55 -92.71 -0.79 12.55 16 32 H 0.43 9.04 6.84 -92.71 -0.63 8.40 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.21 2.17 8.06 -2.91 -0.02 2.14 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 0.63 8.10 -2.39 -0.02 0.62 16 39 H 0.07 0.73 6.67 -2.38 -0.02 0.72 16 Total: -1.00 -74.57 321.95 1.55 -73.02 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: -0.34 Total: 26.85 kcal Atomic # 6 Polarization: 22.02 SS G_CDS: 7.11 Total: 29.13 kcal Atomic # 7 Polarization: -136.70 SS G_CDS: -7.20 Total: -143.90 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.05 Total: -28.64 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -74.57 1.55 -73.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347758780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.335 kcal (2) G-P(sol) polarization free energy of solvation -74.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds