Wall clock time and date at job start Tue Mar 31 2020 00:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30520 * 126.34763 * 2 1 4 4 N 1.28596 * 109.67013 * 179.97438 * 3 2 1 5 5 C 1.30523 * 109.67384 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.34622 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.46915 * 89.97471 * 6 5 4 8 8 C 1.34770 * 120.00054 * 180.02562 * 7 6 5 9 9 O 1.21286 * 120.00333 * 0.02562 * 8 7 6 10 10 C 1.50707 * 119.99940 * 180.02562 * 8 7 6 11 11 H 1.09000 * 109.47293 * 60.00383 * 10 8 7 12 12 C 1.52995 * 109.47310 * 299.99941 * 10 8 7 13 13 C 1.50701 * 109.46801 * 179.97438 * 10 8 7 14 14 H 1.08007 * 120.00676 * 0.02562 * 13 10 8 15 15 C 1.37882 * 119.99772 * 179.97438 * 13 10 8 16 16 N 1.31512 * 120.00111 * 0.02562 * 15 13 10 17 17 Si 1.86795 * 119.99872 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47122 * 90.00592 * 17 15 13 19 19 H 1.48500 * 109.47338 * 210.00326 * 17 15 13 20 20 H 1.48503 * 109.47478 * 330.00591 * 17 15 13 21 21 N 1.35491 * 126.34068 * 179.69573 * 2 1 3 22 22 C 1.46495 * 126.98605 * 0.03558 * 21 2 1 23 23 C 1.53006 * 117.49411 * 311.00536 * 22 21 2 24 24 C 1.53003 * 117.49907 * 242.34965 * 22 21 2 25 25 H 1.08994 * 109.47655 * 95.31255 * 1 2 3 26 26 H 1.08998 * 109.47462 * 215.32168 * 1 2 3 27 27 H 1.09004 * 109.47095 * 335.31247 * 1 2 3 28 28 H 1.08992 * 109.47430 * 209.97613 * 6 5 4 29 29 H 1.09008 * 109.47105 * 329.97906 * 6 5 4 30 30 H 0.97001 * 120.00366 * 0.02562 * 7 6 5 31 31 H 1.09011 * 109.46822 * 300.00421 * 12 10 8 32 32 H 1.08998 * 109.46908 * 59.99522 * 12 10 8 33 33 H 1.08993 * 109.47474 * 180.02562 * 12 10 8 34 34 H 0.96993 * 120.00331 * 179.97438 * 16 15 13 35 35 H 1.08998 * 115.55788 * 96.67271 * 22 21 2 36 36 H 1.08991 * 117.50075 * 359.97438 * 23 22 21 37 37 H 1.09008 * 117.49617 * 145.02189 * 23 22 21 38 38 H 1.08998 * 117.50014 * 214.97607 * 24 22 21 39 39 H 1.09005 * 117.49980 * 359.97228 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2806 1.0513 0.0000 4 7 3.5124 0.6822 0.0005 5 6 3.5806 -0.6212 0.0004 6 6 4.8395 -1.4497 0.0003 7 7 5.2477 -1.7178 1.3815 8 6 6.3548 -2.4458 1.6278 9 8 7.0136 -2.8785 0.7060 10 6 6.7743 -2.7220 3.0487 11 1 5.9818 -3.2663 3.5623 12 6 7.0343 -1.3983 3.7703 13 6 8.0332 -3.5504 3.0486 14 1 8.4847 -3.8469 2.1133 15 6 8.6094 -3.9291 4.2427 16 7 8.0600 -3.5678 5.3817 17 14 10.1694 -4.9565 4.2427 18 1 11.3529 -4.0594 4.2421 19 1 10.1982 -5.8129 5.4555 20 1 10.1976 -5.8138 3.0305 21 7 2.3099 -1.0914 0.0058 22 6 1.8896 -2.4947 0.0125 23 6 0.8333 -2.9108 1.0383 24 6 2.2896 -3.3462 1.2191 25 1 -0.3634 -0.0951 -1.0232 26 1 -0.3634 -0.8385 0.5941 27 1 -0.3633 0.9338 0.4292 28 1 4.6537 -2.3929 -0.5133 29 1 5.6322 -0.9061 -0.5138 30 1 4.7211 -1.3715 2.1189 31 1 7.8269 -0.8540 3.2566 32 1 6.1235 -0.7995 3.7702 33 1 7.3382 -1.5980 4.7978 34 1 8.4650 -3.8344 6.2217 35 1 1.8646 -2.9828 -0.9618 36 1 0.4515 -2.1406 1.7083 37 1 0.1137 -3.6729 0.7389 38 1 2.5276 -4.3945 1.0387 39 1 2.8660 -2.8624 2.0077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350981220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:16 Heat of formation + Delta-G solvation = 43.569997 kcal Electronic energy + Delta-G solvation = -21748.951761 eV Core-core repulsion = 18500.089596 eV Total energy + Delta-G solvation = -3248.862165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -44.33418 -40.59402 -38.68708 -36.18506 -35.75815 -34.02933 -33.42603 -32.39090 -29.59958 -27.38266 -27.13686 -24.82713 -24.27228 -23.61668 -22.01158 -21.37022 -21.23545 -18.64052 -18.37925 -17.88554 -17.48370 -16.72559 -16.30556 -16.26114 -15.90667 -15.37346 -15.04534 -14.76506 -14.53799 -14.36827 -13.94559 -13.73930 -13.39472 -13.32253 -12.97738 -12.69785 -12.64779 -12.60106 -12.51039 -12.26484 -12.22044 -12.01083 -11.95221 -11.26168 -11.05359 -11.03648 -10.71781 -10.46445 -10.14838 -10.11338 -8.14573 -6.24971 0.53533 1.26966 1.42100 1.43598 1.54496 1.60745 1.86722 2.36383 2.38549 2.53748 3.01110 3.15577 3.30451 3.55108 3.62863 3.78316 3.93564 4.13811 4.24068 4.50119 4.60182 4.65287 4.68419 4.72014 4.74724 4.79944 4.90257 4.91567 4.93269 4.99694 5.05685 5.14091 5.34720 5.47326 5.73418 5.83508 5.91083 6.18123 6.59752 6.84322 7.36844 7.47064 7.57510 8.91359 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028777 B = 0.004061 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.750890 B = 6892.862456 C = 7157.089770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.192 3.808 3 N -0.340 5.340 4 N -0.314 5.314 5 C 0.162 3.838 6 C 0.219 3.781 7 N -0.719 5.719 8 C 0.531 3.469 9 O -0.577 6.577 10 C 0.029 3.971 11 H 0.046 0.954 12 C -0.121 4.121 13 C -0.527 4.527 14 H 0.052 0.948 15 C 0.020 3.980 16 N -0.912 5.912 17 Si 0.955 3.045 18 H -0.277 1.277 19 H -0.275 1.275 20 H -0.276 1.276 21 N -0.434 5.434 22 C 0.026 3.974 23 C -0.135 4.135 24 C -0.178 4.178 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.404 0.596 31 H 0.022 0.978 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.265 0.735 35 H 0.162 0.838 36 H 0.108 0.892 37 H 0.150 0.850 38 H 0.125 0.875 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.898 0.648 -8.258 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 N -0.181 5.181 4 N -0.154 5.154 5 C -0.107 4.107 6 C 0.093 3.907 7 N -0.374 5.374 8 C 0.321 3.679 9 O -0.455 6.455 10 C 0.008 3.992 11 H 0.064 0.936 12 C -0.179 4.179 13 C -0.566 4.566 14 H 0.070 0.930 15 C -0.179 4.179 16 N -0.551 5.551 17 Si 0.781 3.219 18 H -0.203 1.203 19 H -0.200 1.200 20 H -0.201 1.201 21 N -0.124 5.124 22 C -0.077 4.077 23 C -0.172 4.172 24 C -0.215 4.215 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.239 0.761 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.179 0.821 36 H 0.126 0.874 37 H 0.168 0.832 38 H 0.143 0.857 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.977 1.753 -8.747 21.878 hybrid contribution 0.726 -1.332 0.425 1.575 sum -19.251 0.421 -8.322 20.977 Atomic orbital electron populations 1.20597 0.80097 1.06197 1.05781 1.25736 0.98806 0.81809 1.01188 1.74229 0.96449 1.25732 1.21696 1.74221 1.13321 1.09244 1.18659 1.24497 0.87648 0.91926 1.06599 1.19279 0.88767 0.97323 0.85320 1.45969 1.28236 1.55705 1.07464 1.21493 0.78329 0.75275 0.92847 1.90530 1.54486 1.52764 1.47750 1.18782 0.97284 0.95848 0.87315 0.93641 1.21575 0.98585 0.94986 1.02777 1.21283 1.09783 1.32685 0.92804 0.92977 1.25589 1.00216 0.97044 0.95035 1.69946 1.41070 1.46550 0.97536 0.85595 0.79927 0.78845 0.77525 1.20293 1.20046 1.20054 1.45703 1.05193 1.08525 1.53012 1.22509 1.08728 0.77613 0.98843 1.23608 0.92110 1.03504 0.97938 1.23458 0.99488 1.01168 0.97422 0.87622 0.87566 0.88180 0.88769 0.89777 0.76096 0.95880 0.93882 0.90902 0.92625 0.82130 0.87364 0.83215 0.85695 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.16 71.24 0.72 0.02 16 2 C 0.19 4.23 7.92 137.98 1.09 5.32 16 3 N -0.34 -10.61 12.21 -50.16 -0.61 -11.22 16 4 N -0.31 -10.80 12.21 -50.15 -0.61 -11.41 16 5 C 0.16 4.65 7.38 137.98 1.02 5.67 16 6 C 0.22 6.66 6.02 85.63 0.52 7.17 16 7 N -0.72 -24.69 5.30 -466.78 -2.47 -27.16 16 8 C 0.53 23.68 7.15 87.66 0.63 24.31 16 9 O -0.58 -29.57 15.46 -3.05 -0.05 -29.61 16 10 C 0.03 1.43 2.64 -12.29 -0.03 1.40 16 11 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 12 C -0.12 -5.65 8.87 71.98 0.64 -5.01 16 13 C -0.53 -30.00 8.38 25.60 0.21 -29.79 16 14 H 0.05 3.16 6.75 -2.91 -0.02 3.14 16 15 C 0.02 1.12 5.30 84.66 0.45 1.57 16 16 N -0.91 -50.72 11.32 21.45 0.24 -50.48 16 17 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 21 N -0.43 -9.36 3.03 -481.74 -1.46 -10.82 16 22 C 0.03 0.36 6.07 45.00 0.27 0.63 16 23 C -0.13 -1.11 9.07 30.62 0.28 -0.84 16 24 C -0.18 -2.73 10.44 30.62 0.32 -2.41 16 25 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.11 0.58 5.50 -2.39 -0.01 0.57 16 27 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.09 2.62 7.95 -2.39 -0.02 2.60 16 29 H 0.08 2.79 8.14 -2.38 -0.02 2.78 16 30 H 0.40 12.83 7.82 -92.71 -0.72 12.11 16 31 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.04 1.68 7.56 -2.39 -0.02 1.66 16 33 H 0.07 3.73 6.07 -2.39 -0.01 3.71 16 34 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 35 H 0.16 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.11 0.91 6.90 -2.39 -0.02 0.89 16 37 H 0.15 0.33 8.14 -2.38 -0.02 0.31 16 38 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 1.74 7.93 -2.38 -0.02 1.72 16 Total: -1.00 -74.41 329.70 3.53 -70.88 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.35 Total: 15.34 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 6.12 Total: 8.05 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -4.91 Total: -111.09 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.05 Total: -29.61 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -74.41 3.53 -70.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350981220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.445 kcal (2) G-P(sol) polarization free energy of solvation -74.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds