Wall clock time and date at job start Mon Mar 30 2020 23:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30829 * 125.96102 * 2 1 4 4 C 1.33239 * 109.82920 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.52839 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.46438 * 270.01290 * 5 4 3 7 7 O 1.21275 * 120.00536 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99298 * 179.97438 * 6 5 4 9 9 C 1.46924 * 120.63269 * 359.72041 * 8 6 5 10 10 C 1.52757 * 109.00929 * 233.58184 * 9 8 6 11 11 C 1.53034 * 109.38619 * 305.58790 * 10 9 8 12 12 C 1.50696 * 109.45047 * 181.25179 * 11 10 9 13 13 H 1.08005 * 120.00492 * 239.93970 * 12 11 10 14 14 C 1.37881 * 119.99736 * 59.94346 * 12 11 10 15 15 N 1.31510 * 120.00179 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99695 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47434 * 89.99863 * 16 14 12 18 18 H 1.48506 * 109.46931 * 209.99924 * 16 14 12 19 19 H 1.48505 * 109.47466 * 329.99397 * 16 14 12 20 20 C 1.53046 * 109.53482 * 61.24057 * 11 10 9 21 21 C 1.46931 * 120.62775 * 180.02562 * 8 6 5 22 22 N 1.30714 * 108.94945 * 359.97438 * 4 3 2 23 23 N 1.34428 * 125.96139 * 179.97438 * 2 1 3 24 24 H 0.97003 * 126.82574 * 0.02562 * 23 2 1 25 25 H 1.08998 * 109.47307 * 89.98151 * 1 2 3 26 26 H 1.09003 * 109.47186 * 209.97910 * 1 2 3 27 27 H 1.08998 * 109.47075 * 329.97660 * 1 2 3 28 28 H 1.08996 * 109.46665 * 30.01277 * 5 4 3 29 29 H 1.08998 * 109.46760 * 150.01521 * 5 4 3 30 30 H 1.09003 * 109.58831 * 353.42089 * 9 8 6 31 31 H 1.09006 * 109.58454 * 113.83945 * 9 8 6 32 32 H 1.09006 * 109.56530 * 185.55267 * 10 9 8 33 33 H 1.09003 * 109.38649 * 65.52209 * 10 9 8 34 34 H 1.09004 * 109.46219 * 301.22314 * 11 10 9 35 35 H 0.97003 * 119.99832 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.49887 * 178.68271 * 20 11 10 37 37 H 1.08995 * 109.52377 * 58.60425 * 20 11 10 38 38 H 1.09001 * 109.58334 * 246.15663 * 21 8 6 39 39 H 1.09002 * 109.58520 * 6.44143 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7373 1.6236 0.0002 6 6 5.1313 1.9344 -1.4208 7 8 4.5135 1.4447 -2.3424 8 7 6.1703 2.7567 -1.6674 9 6 6.9245 3.3624 -0.5616 10 6 6.9654 4.8768 -0.7578 11 6 7.5229 5.1940 -2.1473 12 6 7.5926 6.6882 -2.3308 13 1 7.0398 7.1606 -3.1294 14 6 8.3622 7.4521 -1.4792 15 7 9.0350 6.8770 -0.5066 16 14 8.4480 9.3043 -1.7063 17 1 7.3719 9.9507 -0.9130 18 1 9.7695 9.7990 -1.2434 19 1 8.2711 9.6357 -3.1430 20 6 6.6078 4.5913 -3.2157 21 6 6.5662 3.0696 -3.0474 22 7 3.6195 -0.6168 0.0015 23 7 2.2964 -1.0881 0.0005 24 1 2.0094 -2.0147 0.0006 25 1 -0.3634 0.0003 -1.0276 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 4.4701 2.5473 0.5135 29 1 5.5742 1.1512 0.5143 30 1 6.4351 3.1310 0.3845 31 1 7.9415 2.9700 -0.5547 32 1 7.6048 5.3262 0.0020 33 1 5.9567 5.2804 -0.6696 34 1 8.5221 4.7693 -2.2433 35 1 9.5761 7.4146 0.0927 36 1 6.9926 4.8375 -4.2054 37 1 5.6022 4.9970 -3.1052 38 1 7.5532 2.6529 -3.2478 39 1 5.8416 2.6430 -3.7410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350981250.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:53 Heat of formation + Delta-G solvation = 37.961572 kcal Electronic energy + Delta-G solvation = -21495.870005 eV Core-core repulsion = 18246.764641 eV Total energy + Delta-G solvation = -3249.105364 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -42.19580 -39.58579 -36.80022 -33.74594 -33.47634 -32.44108 -31.48532 -30.26672 -29.49083 -27.80663 -26.05213 -23.13436 -22.38436 -21.63002 -20.83767 -19.64507 -18.26391 -17.90402 -17.03529 -16.18402 -15.70095 -15.26665 -15.09162 -14.54416 -14.38130 -13.68782 -13.41776 -13.11936 -13.07082 -12.94827 -12.88692 -12.48758 -12.43720 -11.96111 -11.76909 -11.56594 -11.28082 -10.92626 -10.62815 -10.35984 -10.21311 -10.07113 -10.05626 -9.67844 -9.59216 -9.28981 -9.15256 -8.89926 -8.36653 -7.98122 -6.01964 -4.07726 1.51799 2.52567 2.76216 3.00309 3.29808 3.36810 3.40357 3.54134 3.91096 4.42428 4.45628 4.64509 4.92647 5.06891 5.13466 5.27572 5.40865 5.49705 5.57735 5.64841 5.83851 5.97890 6.09991 6.17807 6.19756 6.31277 6.36871 6.48360 6.68708 6.92293 6.94957 7.06253 7.17221 7.29412 7.67905 7.92986 7.94127 8.05453 8.05566 8.41919 8.56991 8.95617 9.57347 11.03577 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033184 B = 0.003530 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.573002 B = 7929.946524 C = 8089.509066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.280 3.720 3 N -0.529 5.529 4 C 0.259 3.741 5 C -0.050 4.050 6 C 0.521 3.479 7 O -0.551 6.551 8 N -0.599 5.599 9 C 0.101 3.899 10 C -0.126 4.126 11 C 0.049 3.951 12 C -0.511 4.511 13 H 0.055 0.945 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.123 4.123 21 C 0.113 3.887 22 N -0.307 5.307 23 N -0.485 5.485 24 H 0.438 0.562 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.040 0.960 34 H 0.028 0.972 35 H 0.260 0.740 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.195 -13.901 4.186 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.001 3.999 3 N -0.258 5.258 4 C -0.024 4.024 5 C -0.092 4.092 6 C 0.307 3.693 7 O -0.430 6.430 8 N -0.331 5.331 9 C -0.021 4.021 10 C -0.164 4.164 11 C 0.030 3.970 12 C -0.549 4.549 13 H 0.073 0.927 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.162 4.162 21 C -0.009 4.009 22 N -0.136 5.136 23 N -0.204 5.204 24 H 0.283 0.717 25 H 0.110 0.890 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.141 0.859 29 H 0.134 0.866 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.790 -14.114 3.848 18.789 hybrid contribution -0.185 0.454 -0.017 0.490 sum -11.975 -13.660 3.832 18.566 Atomic orbital electron populations 1.20374 0.83740 1.04807 1.04578 1.24360 0.96573 0.82843 0.96097 1.70314 1.01374 1.29472 1.24612 1.23355 0.92656 0.89645 0.96792 1.19975 0.93369 0.98698 0.97180 1.20026 0.80070 0.79006 0.90158 1.90660 1.53312 1.52802 1.46180 1.48185 1.30985 1.45421 1.08535 1.22009 0.95332 0.97223 0.87499 1.21960 1.01063 0.89989 1.03420 1.18632 0.93629 0.95202 0.89513 1.21212 1.27839 0.91914 1.13961 0.92713 1.24953 0.95317 0.98419 0.95269 1.69829 1.30447 1.35247 1.17588 0.86618 0.77272 0.85828 0.78422 1.20725 1.21291 1.19988 1.22003 1.01139 0.92172 1.00844 1.21682 0.99572 0.97661 0.81951 1.77969 0.96532 1.12322 1.26785 1.47916 1.04351 1.09855 1.58230 0.71722 0.89020 0.90030 0.88323 0.85917 0.86623 0.91373 0.91699 0.87639 0.94096 0.95428 0.92993 0.92162 0.92896 0.92180 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.51 36.01 0.38 -0.09 16 2 C 0.28 3.26 8.24 -155.70 -1.28 1.98 16 3 N -0.53 -8.30 11.19 -8.16 -0.09 -8.39 16 4 C 0.26 4.19 6.63 -156.85 -1.04 3.15 16 5 C -0.05 -0.75 4.68 -29.03 -0.14 -0.88 16 6 C 0.52 9.60 7.69 -10.98 -0.08 9.52 16 7 O -0.55 -11.96 15.45 5.56 0.09 -11.88 16 8 N -0.60 -10.94 2.98 -173.05 -0.52 -11.46 16 9 C 0.10 1.77 6.31 -3.94 -0.02 1.74 16 10 C -0.13 -2.73 5.14 -26.84 -0.14 -2.87 16 11 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 12 C -0.51 -13.59 8.56 -34.44 -0.29 -13.89 16 13 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 14 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 15 N -0.89 -24.26 11.30 55.43 0.63 -23.63 16 16 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.12 -2.56 5.30 -26.63 -0.14 -2.70 16 21 C 0.11 2.13 6.43 -3.73 -0.02 2.11 16 22 N -0.31 -4.74 12.80 32.42 0.41 -4.32 16 23 N -0.49 -5.47 7.45 32.62 0.24 -5.23 16 24 H 0.44 3.03 8.96 -182.33 -1.63 1.40 16 25 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.12 1.66 7.68 -51.93 -0.40 1.26 16 29 H 0.12 1.44 7.95 -51.93 -0.41 1.02 16 30 H 0.07 0.98 5.93 -51.93 -0.31 0.67 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.11 2.54 6.03 -51.93 -0.31 2.22 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 LS Contribution 321.77 15.07 4.85 4.85 Total: -1.00 -33.99 321.77 -9.26 -43.25 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.78 Total: 0.42 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -3.07 Total: 0.58 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.68 Total: -53.03 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.99 -9.26 -43.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350981250.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.212 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds