Wall clock time and date at job start Mon Mar 30 2020 23:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30829 * 125.96102 * 2 1 4 4 C 1.33239 * 109.82920 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.52839 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.46438 * 270.01290 * 5 4 3 7 7 O 1.21275 * 120.00536 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99298 * 179.97438 * 6 5 4 9 9 C 1.46924 * 120.63269 * 359.72041 * 8 6 5 10 10 C 1.52757 * 109.00929 * 233.58184 * 9 8 6 11 11 C 1.53034 * 109.38619 * 305.58790 * 10 9 8 12 12 C 1.50696 * 109.45047 * 181.25179 * 11 10 9 13 13 H 1.08005 * 120.00492 * 239.93970 * 12 11 10 14 14 C 1.37881 * 119.99736 * 59.94346 * 12 11 10 15 15 N 1.31510 * 120.00179 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99695 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47434 * 89.99863 * 16 14 12 18 18 H 1.48506 * 109.46931 * 209.99924 * 16 14 12 19 19 H 1.48505 * 109.47466 * 329.99397 * 16 14 12 20 20 C 1.53046 * 109.53482 * 61.24057 * 11 10 9 21 21 C 1.46931 * 120.62775 * 180.02562 * 8 6 5 22 22 N 1.30714 * 108.94945 * 359.97438 * 4 3 2 23 23 N 1.34428 * 125.96139 * 179.97438 * 2 1 3 24 24 H 0.97003 * 126.82574 * 0.02562 * 23 2 1 25 25 H 1.08998 * 109.47307 * 89.98151 * 1 2 3 26 26 H 1.09003 * 109.47186 * 209.97910 * 1 2 3 27 27 H 1.08998 * 109.47075 * 329.97660 * 1 2 3 28 28 H 1.08996 * 109.46665 * 30.01277 * 5 4 3 29 29 H 1.08998 * 109.46760 * 150.01521 * 5 4 3 30 30 H 1.09003 * 109.58831 * 353.42089 * 9 8 6 31 31 H 1.09006 * 109.58454 * 113.83945 * 9 8 6 32 32 H 1.09006 * 109.56530 * 185.55267 * 10 9 8 33 33 H 1.09003 * 109.38649 * 65.52209 * 10 9 8 34 34 H 1.09004 * 109.46219 * 301.22314 * 11 10 9 35 35 H 0.97003 * 119.99832 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.49887 * 178.68271 * 20 11 10 37 37 H 1.08995 * 109.52377 * 58.60425 * 20 11 10 38 38 H 1.09001 * 109.58334 * 246.15663 * 21 8 6 39 39 H 1.09002 * 109.58520 * 6.44143 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7373 1.6236 0.0002 6 6 5.1313 1.9344 -1.4208 7 8 4.5135 1.4447 -2.3424 8 7 6.1703 2.7567 -1.6674 9 6 6.9245 3.3624 -0.5616 10 6 6.9654 4.8768 -0.7578 11 6 7.5229 5.1940 -2.1473 12 6 7.5926 6.6882 -2.3308 13 1 7.0398 7.1606 -3.1294 14 6 8.3622 7.4521 -1.4792 15 7 9.0350 6.8770 -0.5066 16 14 8.4480 9.3043 -1.7063 17 1 7.3719 9.9507 -0.9130 18 1 9.7695 9.7990 -1.2434 19 1 8.2711 9.6357 -3.1430 20 6 6.6078 4.5913 -3.2157 21 6 6.5662 3.0696 -3.0474 22 7 3.6195 -0.6168 0.0015 23 7 2.2964 -1.0881 0.0005 24 1 2.0094 -2.0147 0.0006 25 1 -0.3634 0.0003 -1.0276 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 4.4701 2.5473 0.5135 29 1 5.5742 1.1512 0.5143 30 1 6.4351 3.1310 0.3845 31 1 7.9415 2.9700 -0.5547 32 1 7.6048 5.3262 0.0020 33 1 5.9567 5.2804 -0.6696 34 1 8.5221 4.7693 -2.2433 35 1 9.5761 7.4146 0.0927 36 1 6.9926 4.8375 -4.2054 37 1 5.6022 4.9970 -3.1052 38 1 7.5532 2.6529 -3.2478 39 1 5.8416 2.6430 -3.7410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350981250.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:53 Heat of formation + Delta-G solvation = 15.558865 kcal Electronic energy + Delta-G solvation = -21496.841459 eV Core-core repulsion = 18246.764641 eV Total energy + Delta-G solvation = -3250.076818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.18277 -41.06940 -38.43220 -35.32665 -34.75066 -33.36375 -33.15838 -31.86176 -30.67324 -28.71354 -27.83516 -24.82761 -23.96197 -22.75338 -21.98886 -21.12622 -19.74117 -18.87885 -18.64023 -17.99994 -16.99121 -16.51168 -16.42136 -16.38024 -15.42940 -14.91366 -14.84806 -14.69761 -14.46277 -14.15085 -14.03561 -13.65899 -13.59955 -13.21420 -13.13593 -13.05664 -12.77613 -12.73027 -12.44374 -12.12479 -11.90733 -11.45191 -11.26427 -11.10651 -10.99765 -10.96711 -10.72303 -10.44664 -10.34829 -9.55309 -8.05258 -6.17847 0.55297 1.43335 1.45534 1.54094 1.57164 1.63480 1.74929 2.22157 2.46588 2.99796 3.21411 3.51618 3.60643 3.88159 4.15945 4.27773 4.35430 4.36665 4.41653 4.53458 4.59259 4.70350 4.74157 4.79378 4.88378 5.01107 5.05075 5.21152 5.23285 5.27520 5.33093 5.46017 5.57533 5.68046 6.02623 6.17242 6.22411 6.42434 6.48288 6.91055 7.07052 7.12780 7.49537 8.98140 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033184 B = 0.003530 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.573002 B = 7929.946524 C = 8089.509066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.285 3.715 3 N -0.571 5.571 4 C 0.239 3.761 5 C -0.046 4.046 6 C 0.521 3.479 7 O -0.587 6.587 8 N -0.600 5.600 9 C 0.111 3.889 10 C -0.117 4.117 11 C 0.046 3.954 12 C -0.535 4.535 13 H 0.045 0.955 14 C 0.019 3.981 15 N -0.910 5.910 16 Si 0.947 3.053 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.274 1.274 20 C -0.113 4.113 21 C 0.118 3.882 22 N -0.335 5.335 23 N -0.474 5.474 24 H 0.456 0.544 25 H 0.103 0.897 26 H 0.118 0.882 27 H 0.101 0.899 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.029 0.971 34 H 0.006 0.994 35 H 0.262 0.738 36 H 0.062 0.938 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.350 -14.813 5.022 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.008 3.992 3 N -0.302 5.302 4 C -0.044 4.044 5 C -0.087 4.087 6 C 0.309 3.691 7 O -0.468 6.468 8 N -0.332 5.332 9 C -0.011 4.011 10 C -0.156 4.156 11 C 0.027 3.973 12 C -0.573 4.573 13 H 0.063 0.937 14 C -0.180 4.180 15 N -0.549 5.549 16 Si 0.774 3.226 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.151 4.151 21 C -0.004 4.004 22 N -0.165 5.165 23 N -0.194 5.194 24 H 0.305 0.695 25 H 0.121 0.879 26 H 0.136 0.864 27 H 0.120 0.880 28 H 0.155 0.845 29 H 0.160 0.840 30 H 0.123 0.877 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.048 0.952 34 H 0.024 0.976 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.956 -15.055 4.695 20.410 hybrid contribution 0.113 0.702 -0.307 0.775 sum -12.843 -14.353 4.388 19.753 Atomic orbital electron populations 1.20649 0.79912 1.06804 1.05831 1.25273 0.98356 0.81937 0.93665 1.70297 1.01715 1.31588 1.26581 1.23529 0.93240 0.90056 0.97600 1.20019 0.94303 0.99626 0.94801 1.20593 0.79104 0.78071 0.91327 1.90636 1.54309 1.54139 1.47710 1.48223 1.31169 1.45461 1.08333 1.21944 0.96355 0.93992 0.88809 1.21734 0.99463 0.93050 1.01350 1.18607 0.93182 0.93830 0.91667 1.21538 1.28098 0.93751 1.13940 0.93669 1.25599 0.95115 1.02161 0.95110 1.69932 1.30647 1.36443 1.17907 0.85726 0.77334 0.81335 0.78240 1.20311 1.20825 1.19922 1.21845 0.99594 0.93569 1.00113 1.21565 1.00230 0.95925 0.82700 1.77840 0.98884 1.12240 1.27518 1.47839 1.03155 1.10964 1.57446 0.69546 0.87893 0.86355 0.88007 0.84545 0.83979 0.87667 0.90912 0.89869 0.95232 0.97626 0.92896 0.91889 0.94128 0.90940 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.51 71.24 0.75 0.07 16 2 C 0.29 6.11 8.24 138.23 1.14 7.25 16 3 N -0.57 -17.33 11.19 -179.72 -2.01 -19.34 16 4 C 0.24 7.49 6.63 138.63 0.92 8.41 16 5 C -0.05 -1.30 4.68 29.11 0.14 -1.16 16 6 C 0.52 18.67 7.69 87.66 0.67 19.35 16 7 O -0.59 -25.32 15.45 -3.01 -0.05 -25.36 16 8 N -0.60 -21.31 2.98 -819.80 -2.44 -23.75 16 9 C 0.11 3.70 6.31 86.22 0.54 4.25 16 10 C -0.12 -5.09 5.14 30.52 0.16 -4.93 16 11 C 0.05 2.19 2.07 -11.51 -0.02 2.17 16 12 C -0.54 -28.90 8.56 25.60 0.22 -28.68 16 13 H 0.05 2.46 7.74 -2.91 -0.02 2.43 16 14 C 0.02 1.03 5.30 84.66 0.45 1.48 16 15 N -0.91 -49.74 11.30 21.45 0.24 -49.50 16 16 Si 0.95 42.82 29.54 68.60 2.03 44.84 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 C -0.11 -4.73 5.30 30.66 0.16 -4.57 16 21 C 0.12 4.39 6.43 86.35 0.56 4.95 16 22 N -0.34 -9.93 12.80 -51.33 -0.66 -10.58 16 23 N -0.47 -9.82 7.45 -50.71 -0.38 -10.20 16 24 H 0.46 5.30 8.96 -213.09 -1.91 3.39 16 25 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 28 H 0.14 3.43 7.68 -2.39 -0.02 3.41 16 29 H 0.14 3.18 7.95 -2.39 -0.02 3.16 16 30 H 0.11 2.76 5.93 -2.39 -0.01 2.74 16 31 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 32 H 0.08 4.02 6.03 -2.38 -0.01 4.01 16 33 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 36 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.08 2.86 7.00 -2.39 -0.02 2.84 16 Total: -1.00 -74.37 321.77 1.58 -72.80 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -0.84 Total: 12.52 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 5.68 Total: 8.57 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -5.24 Total: -113.37 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.05 Total: -25.36 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -74.37 1.58 -72.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350981250.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.357 kcal (2) G-P(sol) polarization free energy of solvation -74.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds