Wall clock time and date at job start Tue Mar 31 2020 01:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.16344 * 2 1 4 4 C 1.53787 * 109.20629 * 119.33159 * 2 1 3 5 5 C 1.52016 * 106.71289 * 199.16346 * 4 2 1 6 6 N 1.30129 * 127.64907 * 116.71672 * 5 4 2 7 7 N 1.40406 * 107.90795 * 180.02562 * 6 5 4 8 8 H 0.96996 * 126.02013 * 180.02562 * 7 6 5 9 9 C 1.35296 * 107.97077 * 359.97438 * 7 6 5 10 10 C 1.34606 * 107.41723 * 359.97386 * 9 7 6 11 11 C 1.51952 * 127.59636 * 180.10263 * 10 9 7 12 12 N 1.47541 * 106.88596 * 243.83824 * 11 10 9 13 13 C 1.46904 * 110.99521 * 153.51783 * 12 11 10 14 14 C 1.50700 * 109.47192 * 296.52169 * 13 12 11 15 15 O 1.21293 * 119.99810 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99675 * 180.28082 * 14 13 12 17 17 C 1.37102 * 119.99634 * 179.72687 * 16 14 13 18 18 H 1.08002 * 119.99868 * 359.97438 * 17 16 14 19 19 C 1.38945 * 119.99860 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99894 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99956 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47230 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.46892 * 120.00602 * 21 19 17 24 24 H 1.48503 * 109.46797 * 240.00208 * 21 19 17 25 25 C 1.44480 * 112.97364 * 278.94224 * 12 11 10 26 26 H 1.09002 * 109.47137 * 179.33056 * 1 2 3 27 27 H 1.08997 * 109.47550 * 299.33708 * 1 2 3 28 28 H 1.08998 * 109.46980 * 59.33397 * 1 2 3 29 29 H 1.09005 * 110.00198 * 318.46767 * 4 2 1 30 30 H 1.09000 * 109.99968 * 79.86399 * 4 2 1 31 31 H 1.07997 * 126.28837 * 179.97438 * 9 7 6 32 32 H 1.08996 * 109.97267 * 124.49405 * 11 10 9 33 33 H 1.09004 * 109.96744 * 3.18159 * 11 10 9 34 34 H 1.09009 * 109.46542 * 176.52199 * 13 12 11 35 35 H 1.08998 * 109.47050 * 56.52734 * 13 12 11 36 36 H 0.97001 * 120.00485 * 359.71840 * 16 14 13 37 37 H 0.97004 * 119.99542 * 179.97438 * 20 19 17 38 38 H 1.08998 * 107.89768 * 197.66205 * 25 12 11 39 39 H 1.09004 * 107.89979 * 313.74363 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8878 1.0296 0.0000 4 6 2.0359 -0.7114 1.2661 5 6 3.4784 -0.2754 1.4657 6 7 3.9745 0.3982 2.4625 7 7 5.3473 0.5727 2.2249 8 1 5.9715 1.0385 2.8030 9 6 5.6466 -0.0243 1.0483 10 6 4.5078 -0.5542 0.5642 11 6 4.3225 -1.3291 -0.7297 12 7 3.4212 -0.5305 -1.5821 13 6 3.6538 -0.8141 -3.0047 14 6 5.0526 -0.3958 -3.3781 15 8 5.7840 0.0902 -2.5414 16 7 5.4891 -0.5571 -4.6430 17 6 6.7597 -0.1714 -4.9841 18 1 7.4107 0.2620 -4.2392 19 6 7.2099 -0.3382 -6.2879 20 7 6.4176 -0.8651 -7.1943 21 14 8.9410 0.1880 -6.7528 22 1 9.6251 0.7485 -5.5600 23 1 9.6988 -0.9880 -7.2506 24 1 8.8751 1.2212 -7.8175 25 6 2.0272 -0.6987 -1.2418 26 1 -0.3633 -1.0276 -0.0120 27 1 -0.3634 0.5035 0.8958 28 1 -0.3633 0.5241 -0.8839 29 1 1.4345 -0.4154 2.1257 30 1 1.9883 -1.7919 1.1308 31 1 6.6202 -0.0677 0.5829 32 1 3.8740 -2.3003 -0.5210 33 1 5.2842 -1.4609 -1.2256 34 1 2.9353 -0.2591 -3.6079 35 1 3.5330 -1.8819 -3.1867 36 1 4.9043 -0.9462 -5.3120 37 1 6.7318 -0.9812 -8.1047 38 1 1.4319 -0.3476 -2.0847 39 1 1.8374 -1.7656 -1.1241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460778260.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:07 Heat of formation + Delta-G solvation = 44.119076 kcal Electronic energy + Delta-G solvation = -21939.187179 eV Core-core repulsion = 18690.348824 eV Total energy + Delta-G solvation = -3248.838355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.11768 -38.71013 -37.29474 -34.65537 -33.68106 -31.81220 -31.22999 -30.48646 -27.59915 -27.06240 -26.03270 -24.64326 -22.45707 -20.89333 -19.96982 -19.22921 -18.90213 -17.81180 -17.50282 -16.06450 -15.33716 -14.94319 -14.63477 -14.48003 -14.29467 -14.09656 -13.93803 -13.43224 -13.13288 -12.83350 -12.63458 -12.38314 -12.14927 -11.77435 -11.53105 -11.48277 -11.24763 -11.13298 -10.90529 -10.74289 -10.61169 -10.34195 -10.20934 -10.15044 -9.45100 -9.12141 -8.34871 -8.14127 -7.93121 -7.70450 -6.39824 -3.80229 2.20556 3.03325 3.11851 3.16903 3.27357 3.33931 3.94897 4.07295 4.28808 4.71669 4.84654 5.00514 5.12871 5.23691 5.27746 5.38347 5.50493 5.58360 5.65118 5.70342 5.70866 5.77315 5.81594 5.91602 6.02263 6.06544 6.08412 6.21664 6.32065 6.33449 6.42444 6.59587 6.96063 7.43933 7.56563 7.56802 7.65340 7.96078 8.09430 8.64862 9.20666 9.57970 10.09804 10.78171 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023906 B = 0.004456 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.968757 B = 6282.046164 C = 7249.313971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 H 0.080 0.920 4 C -0.031 4.031 5 C 0.083 3.917 6 N -0.304 5.304 7 N -0.493 5.493 8 H 0.434 0.566 9 C 0.081 3.919 10 C -0.208 4.208 11 C 0.139 3.861 12 N -0.525 5.525 13 C 0.052 3.948 14 C 0.445 3.555 15 O -0.574 6.574 16 N -0.567 5.567 17 C -0.296 4.296 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.928 3.072 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.073 3.927 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.177 0.823 32 H 0.033 0.967 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.392 0.608 37 H 0.270 0.730 38 H 0.066 0.934 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.797 -1.971 12.562 15.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 H 0.098 0.902 4 C -0.070 4.070 5 C -0.085 4.085 6 N -0.126 5.126 7 N -0.201 5.201 8 H 0.277 0.723 9 C -0.065 4.065 10 C -0.219 4.219 11 C 0.012 3.988 12 N -0.249 5.249 13 C -0.079 4.079 14 C 0.230 3.770 15 O -0.458 6.458 16 N -0.204 5.204 17 C -0.426 4.426 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.755 3.245 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.055 4.055 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.194 0.806 32 H 0.051 0.949 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.225 0.775 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -8.393 -0.650 14.086 16.410 hybrid contribution 0.943 -0.809 -1.486 1.937 sum -7.450 -1.459 12.600 14.710 Atomic orbital electron populations 1.21815 0.94481 1.01801 1.01987 1.20849 0.94901 1.01131 0.93338 0.90159 1.20546 0.88324 0.99957 0.98169 1.22285 0.96832 0.97066 0.92332 1.76967 0.89238 1.22773 1.23647 1.46294 1.07679 1.47095 1.19058 0.72268 1.22224 1.00782 0.95904 0.87632 1.19911 0.92008 1.10407 0.99594 1.20802 0.98143 0.90733 0.89146 1.59844 1.04059 1.58867 1.02124 1.21821 0.97820 0.99290 0.88959 1.19772 0.88543 0.85117 0.83567 1.90491 1.57519 1.48400 1.49396 1.41889 1.14586 1.55353 1.08548 1.19721 0.89928 1.37697 0.95215 0.87929 1.25238 0.99827 0.97376 0.95541 1.69623 1.36569 1.44704 1.03522 0.85828 0.81899 0.78158 0.78613 1.19304 1.20833 1.20811 1.21085 0.89018 0.97857 0.97578 0.92632 0.92369 0.92355 0.90466 0.90186 0.80569 0.94863 0.88229 0.89473 0.93589 0.77534 0.91993 0.91599 0.96028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.99 37.16 0.33 -0.97 16 2 C -0.08 -1.00 2.62 -91.26 -0.24 -1.24 16 3 H 0.08 1.17 7.91 -51.93 -0.41 0.76 16 4 C -0.03 -0.37 5.44 -26.82 -0.15 -0.52 16 5 C 0.08 1.29 6.41 -82.14 -0.53 0.76 16 6 N -0.30 -4.81 12.70 33.86 0.43 -4.38 16 7 N -0.49 -6.84 7.38 30.38 0.22 -6.61 16 8 H 0.43 4.44 8.96 -182.37 -1.63 2.81 16 9 C 0.08 1.24 11.96 -17.31 -0.21 1.03 16 10 C -0.21 -3.42 5.58 -104.77 -0.58 -4.01 16 11 C 0.14 2.34 5.05 -4.01 -0.02 2.32 16 12 N -0.53 -8.86 4.10 -239.52 -0.98 -9.84 16 13 C 0.05 0.92 5.41 -4.97 -0.03 0.89 16 14 C 0.44 10.18 7.24 -10.98 -0.08 10.10 16 15 O -0.57 -14.74 14.01 5.55 0.08 -14.67 16 16 N -0.57 -14.05 5.29 -10.96 -0.06 -14.11 16 17 C -0.30 -8.09 9.68 -14.93 -0.14 -8.23 16 18 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 20 N -0.90 -24.36 13.05 55.50 0.72 -23.63 16 21 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 C 0.07 0.98 4.21 -6.17 -0.03 0.95 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.49 8.12 -51.93 -0.42 0.06 16 28 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 30 H 0.08 0.89 7.86 -51.93 -0.41 0.48 16 31 H 0.18 2.49 8.06 -52.49 -0.42 2.07 16 32 H 0.03 0.50 7.73 -51.93 -0.40 0.10 16 33 H 0.10 1.92 5.78 -51.93 -0.30 1.62 16 34 H 0.09 1.41 7.73 -51.92 -0.40 1.00 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 37 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.07 0.82 7.29 -51.93 -0.38 0.44 16 39 H 0.02 0.27 7.47 -51.93 -0.39 -0.12 16 LS Contribution 318.15 15.07 4.79 4.79 Total: -1.00 -31.92 318.15 -8.26 -40.18 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.68 Total: 10.89 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.76 Total: 1.57 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 0.34 Total: -58.58 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.08 Total: -14.67 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.92 -8.26 -40.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460778260.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.299 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds