Wall clock time and date at job start Tue Mar 31 2020 01:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.16344 * 2 1 4 4 C 1.53787 * 109.20629 * 119.33159 * 2 1 3 5 5 C 1.52016 * 106.71289 * 199.16346 * 4 2 1 6 6 N 1.30129 * 127.64907 * 116.71672 * 5 4 2 7 7 N 1.40406 * 107.90795 * 180.02562 * 6 5 4 8 8 H 0.96996 * 126.02013 * 180.02562 * 7 6 5 9 9 C 1.35296 * 107.97077 * 359.97438 * 7 6 5 10 10 C 1.34606 * 107.41723 * 359.97386 * 9 7 6 11 11 C 1.51952 * 127.59636 * 180.10263 * 10 9 7 12 12 N 1.47541 * 106.88596 * 243.83824 * 11 10 9 13 13 C 1.46904 * 110.99521 * 153.51783 * 12 11 10 14 14 C 1.50700 * 109.47192 * 296.52169 * 13 12 11 15 15 O 1.21293 * 119.99810 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99675 * 180.28082 * 14 13 12 17 17 C 1.37102 * 119.99634 * 179.72687 * 16 14 13 18 18 H 1.08002 * 119.99868 * 359.97438 * 17 16 14 19 19 C 1.38945 * 119.99860 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99894 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99956 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47230 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.46892 * 120.00602 * 21 19 17 24 24 H 1.48503 * 109.46797 * 240.00208 * 21 19 17 25 25 C 1.44480 * 112.97364 * 278.94224 * 12 11 10 26 26 H 1.09002 * 109.47137 * 179.33056 * 1 2 3 27 27 H 1.08997 * 109.47550 * 299.33708 * 1 2 3 28 28 H 1.08998 * 109.46980 * 59.33397 * 1 2 3 29 29 H 1.09005 * 110.00198 * 318.46767 * 4 2 1 30 30 H 1.09000 * 109.99968 * 79.86399 * 4 2 1 31 31 H 1.07997 * 126.28837 * 179.97438 * 9 7 6 32 32 H 1.08996 * 109.97267 * 124.49405 * 11 10 9 33 33 H 1.09004 * 109.96744 * 3.18159 * 11 10 9 34 34 H 1.09009 * 109.46542 * 176.52199 * 13 12 11 35 35 H 1.08998 * 109.47050 * 56.52734 * 13 12 11 36 36 H 0.97001 * 120.00485 * 359.71840 * 16 14 13 37 37 H 0.97004 * 119.99542 * 179.97438 * 20 19 17 38 38 H 1.08998 * 107.89768 * 197.66205 * 25 12 11 39 39 H 1.09004 * 107.89979 * 313.74363 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8878 1.0296 0.0000 4 6 2.0359 -0.7114 1.2661 5 6 3.4784 -0.2754 1.4657 6 7 3.9745 0.3982 2.4625 7 7 5.3473 0.5727 2.2249 8 1 5.9715 1.0385 2.8030 9 6 5.6466 -0.0243 1.0483 10 6 4.5078 -0.5542 0.5642 11 6 4.3225 -1.3291 -0.7297 12 7 3.4212 -0.5305 -1.5821 13 6 3.6538 -0.8141 -3.0047 14 6 5.0526 -0.3958 -3.3781 15 8 5.7840 0.0902 -2.5414 16 7 5.4891 -0.5571 -4.6430 17 6 6.7597 -0.1714 -4.9841 18 1 7.4107 0.2620 -4.2392 19 6 7.2099 -0.3382 -6.2879 20 7 6.4176 -0.8651 -7.1943 21 14 8.9410 0.1880 -6.7528 22 1 9.6251 0.7485 -5.5600 23 1 9.6988 -0.9880 -7.2506 24 1 8.8751 1.2212 -7.8175 25 6 2.0272 -0.6987 -1.2418 26 1 -0.3633 -1.0276 -0.0120 27 1 -0.3634 0.5035 0.8958 28 1 -0.3633 0.5241 -0.8839 29 1 1.4345 -0.4154 2.1257 30 1 1.9883 -1.7919 1.1308 31 1 6.6202 -0.0677 0.5829 32 1 3.8740 -2.3003 -0.5210 33 1 5.2842 -1.4609 -1.2256 34 1 2.9353 -0.2591 -3.6079 35 1 3.5330 -1.8819 -3.1867 36 1 4.9043 -0.9462 -5.3120 37 1 6.7318 -0.9812 -8.1047 38 1 1.4319 -0.3476 -2.0847 39 1 1.8374 -1.7656 -1.1241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460778260.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:06 Heat of formation + Delta-G solvation = 20.834684 kcal Electronic energy + Delta-G solvation = -21940.196866 eV Core-core repulsion = 18690.348824 eV Total energy + Delta-G solvation = -3249.848042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.28526 -40.31753 -38.65979 -36.09994 -35.36805 -33.24048 -32.88332 -31.74352 -29.05441 -27.97809 -27.19624 -26.47294 -23.75953 -22.03096 -21.03507 -20.93363 -20.13208 -19.76801 -18.68577 -17.70176 -16.65699 -16.36901 -16.34294 -15.72029 -15.57741 -15.53994 -15.37398 -14.86425 -14.37927 -14.08878 -13.76564 -13.73509 -13.45229 -13.09724 -13.00167 -12.96156 -12.62315 -12.35457 -12.25517 -12.11412 -12.08851 -11.77807 -11.56324 -11.45886 -11.27493 -10.26523 -10.15733 -9.92187 -9.35829 -8.99426 -8.41518 -5.88884 1.01448 1.38721 1.43665 1.57109 1.83795 2.04886 2.14038 2.31875 2.89743 3.26442 3.49249 3.66270 3.89593 4.05055 4.10060 4.33330 4.39110 4.47644 4.48704 4.57759 4.63559 4.67850 4.73087 4.79878 4.89710 4.93141 4.94925 5.15438 5.27163 5.32249 5.40410 5.46296 5.55189 5.79532 5.99484 6.20855 6.47686 6.50725 6.68108 6.80661 7.19750 7.64852 8.20633 8.76372 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023906 B = 0.004456 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.968757 B = 6282.046164 C = 7249.313971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 H 0.050 0.950 4 C -0.029 4.029 5 C 0.079 3.921 6 N -0.322 5.322 7 N -0.483 5.483 8 H 0.448 0.552 9 C 0.073 3.927 10 C -0.232 4.232 11 C 0.146 3.854 12 N -0.544 5.544 13 C 0.064 3.936 14 C 0.443 3.557 15 O -0.605 6.605 16 N -0.578 5.578 17 C -0.325 4.325 18 H 0.079 0.921 19 C -0.014 4.014 20 N -0.923 5.923 21 Si 0.989 3.011 22 H -0.273 1.273 23 H -0.272 1.272 24 H -0.274 1.274 25 C 0.068 3.932 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.181 0.819 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.395 0.605 37 H 0.275 0.725 38 H 0.077 0.923 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.172 -2.458 12.797 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 H 0.068 0.932 4 C -0.068 4.068 5 C -0.089 4.089 6 N -0.145 5.145 7 N -0.193 5.193 8 H 0.294 0.706 9 C -0.074 4.074 10 C -0.243 4.243 11 C 0.018 3.982 12 N -0.269 5.269 13 C -0.067 4.067 14 C 0.231 3.769 15 O -0.491 6.491 16 N -0.216 5.216 17 C -0.455 4.455 18 H 0.097 0.903 19 C -0.214 4.214 20 N -0.565 5.565 21 Si 0.814 3.186 22 H -0.198 1.198 23 H -0.198 1.198 24 H -0.199 1.199 25 C -0.059 4.059 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.198 0.802 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.228 0.772 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.788 -1.135 14.341 17.400 hybrid contribution 1.375 -0.639 -1.490 2.126 sum -8.413 -1.774 12.851 15.462 Atomic orbital electron populations 1.21764 0.91820 1.03123 1.02635 1.20795 0.96907 0.99068 0.92763 0.93162 1.20705 0.86487 1.00854 0.98748 1.22764 0.98129 0.96449 0.91601 1.76917 0.89960 1.23379 1.24265 1.46303 1.07553 1.46660 1.18788 0.70598 1.22387 1.00988 0.95915 0.88130 1.20100 0.92881 1.11363 0.99999 1.20639 0.96823 0.91717 0.88984 1.59821 1.06114 1.59515 1.01440 1.21699 0.94212 1.00732 0.90055 1.20762 0.90354 0.83364 0.82453 1.90470 1.59115 1.49356 1.50117 1.41951 1.14077 1.56151 1.09438 1.19666 0.91147 1.39222 0.95439 0.90262 1.25969 1.03321 0.97021 0.95040 1.69684 1.37965 1.44975 1.03856 0.84917 0.77547 0.78107 0.78053 1.19790 1.19768 1.19945 1.21215 0.86840 0.99250 0.98621 0.90916 0.91533 0.92005 0.89090 0.88607 0.80204 0.93080 0.91485 0.87531 0.91319 0.77155 0.91511 0.90454 0.94172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.99 71.98 0.65 -1.39 16 2 C -0.08 -1.65 2.62 -11.21 -0.03 -1.68 16 3 H 0.05 1.42 7.91 -2.39 -0.02 1.40 16 4 C -0.03 -0.64 5.44 30.54 0.17 -0.47 16 5 C 0.08 2.35 6.41 43.57 0.28 2.63 16 6 N -0.32 -9.96 12.70 -46.80 -0.59 -10.55 16 7 N -0.48 -13.27 7.38 -57.81 -0.43 -13.70 16 8 H 0.45 9.00 8.96 -213.13 -1.91 7.09 16 9 C 0.07 2.26 11.96 83.33 1.00 3.26 16 10 C -0.23 -7.59 5.58 -19.96 -0.11 -7.70 16 11 C 0.15 4.85 5.05 85.84 0.43 5.28 16 12 N -0.54 -17.73 4.10 -911.72 -3.73 -21.46 16 13 C 0.06 2.17 5.41 85.56 0.46 2.63 16 14 C 0.44 20.54 7.24 87.66 0.63 21.17 16 15 O -0.61 -31.98 14.01 -3.07 -0.04 -32.02 16 16 N -0.58 -29.12 5.29 -306.98 -1.62 -30.74 16 17 C -0.33 -18.16 9.68 84.04 0.81 -17.35 16 18 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 19 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 20 N -0.92 -49.63 13.05 21.66 0.28 -49.35 16 21 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 25 C 0.07 1.65 4.21 86.08 0.36 2.01 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.90 8.12 -2.39 -0.02 0.88 16 28 H 0.06 0.90 8.09 -2.39 -0.02 0.88 16 29 H 0.09 1.75 8.01 -2.38 -0.02 1.73 16 30 H 0.10 1.82 7.86 -2.39 -0.02 1.80 16 31 H 0.18 5.30 8.06 -2.91 -0.02 5.28 16 32 H 0.05 1.47 7.73 -2.39 -0.02 1.45 16 33 H 0.07 2.65 5.78 -2.38 -0.01 2.63 16 34 H 0.11 3.22 7.73 -2.38 -0.02 3.20 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.39 18.99 7.90 -92.71 -0.73 18.26 16 37 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 38 H 0.08 1.69 7.29 -2.39 -0.02 1.67 16 39 H 0.04 0.84 7.47 -2.38 -0.02 0.82 16 Total: -1.00 -69.09 318.15 -0.54 -69.63 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: -1.56 Total: 35.30 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 5.12 Total: 8.11 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -6.09 Total: -125.80 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.04 Total: -32.02 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -69.09 -0.54 -69.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460778260.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.465 kcal (2) G-P(sol) polarization free energy of solvation -69.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds