Wall clock time and date at job start Tue Mar 31 2020 00:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30823 * 126.44406 * 2 1 4 4 N 1.28921 * 109.74309 * 180.35890 * 3 2 1 5 5 C 1.29724 * 109.42864 * 359.75885 * 4 3 2 6 6 N 1.34799 * 126.43948 * 180.02562 * 2 1 3 7 7 C 1.46219 * 128.60423 * 359.47000 * 6 2 1 8 8 C 1.53340 * 109.17489 * 161.79481 * 7 6 2 9 9 N 1.47076 * 109.23365 * 45.65743 * 8 7 6 10 10 C 1.34773 * 120.95270 * 116.39635 * 9 8 7 11 11 O 1.21287 * 120.00482 * 174.55480 * 10 9 8 12 12 C 1.50697 * 119.99643 * 354.55784 * 10 9 8 13 13 H 1.08998 * 109.47608 * 334.62441 * 12 10 9 14 14 C 1.53006 * 109.47144 * 214.62434 * 12 10 9 15 15 C 1.50704 * 109.47565 * 94.62775 * 12 10 9 16 16 H 1.08003 * 119.99443 * 0.02562 * 15 12 10 17 17 C 1.37873 * 120.00314 * 179.97438 * 15 12 10 18 18 N 1.31509 * 120.00017 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 119.99989 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46706 * 60.00486 * 19 17 15 21 21 H 1.48502 * 109.47038 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47095 * 300.00384 * 19 17 15 23 23 C 1.47527 * 118.10189 * 296.41608 * 9 8 7 24 24 H 1.08995 * 109.95822 * 162.50322 * 23 9 8 25 25 C 1.53003 * 109.95639 * 283.77668 * 23 9 8 26 26 H 1.08995 * 109.46654 * 269.97581 * 1 2 3 27 27 H 1.09002 * 109.46861 * 29.97054 * 1 2 3 28 28 H 1.08993 * 109.47067 * 149.97489 * 1 2 3 29 29 H 1.09005 * 109.52026 * 41.88828 * 7 6 2 30 30 H 1.08998 * 109.57032 * 281.73882 * 7 6 2 31 31 H 1.08997 * 109.50842 * 285.72998 * 8 7 6 32 32 H 1.09000 * 109.50914 * 165.58031 * 8 7 6 33 33 H 1.09004 * 109.47051 * 64.90752 * 14 12 10 34 34 H 1.08997 * 109.47162 * 184.90885 * 14 12 10 35 35 H 1.08998 * 109.47385 * 304.90925 * 14 12 10 36 36 H 0.97000 * 120.00236 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.46919 * 177.50867 * 25 23 9 38 38 H 1.08998 * 109.47155 * 297.51163 * 25 23 9 39 39 H 1.09005 * 109.46766 * 57.51169 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2842 1.0524 0.0000 4 7 3.5190 0.6819 -0.0076 5 6 3.5807 -0.6139 -0.0076 6 7 2.3077 -1.0844 -0.0005 7 6 1.9304 -2.4971 0.0095 8 6 3.1262 -3.3410 -0.4477 9 7 4.3393 -2.8760 0.2418 10 6 5.0080 -3.6835 1.0886 11 8 6.0591 -3.3189 1.5716 12 6 4.4497 -5.0397 1.4353 13 1 3.3671 -5.0302 1.3085 14 6 4.7900 -5.3749 2.8889 15 6 5.0529 -6.0789 0.5257 16 1 5.7693 -5.7865 -0.2278 17 6 4.6910 -7.4029 0.6562 18 7 3.8191 -7.7589 1.5740 19 14 5.4383 -8.6908 -0.4718 20 1 6.9132 -8.7034 -0.2999 21 1 4.8882 -10.0272 -0.1301 22 1 5.1070 -8.3656 -1.8824 23 6 4.8029 -1.5001 -0.0196 24 1 5.4972 -1.1870 0.7601 25 6 5.4854 -1.4300 -1.3872 26 1 -0.3632 -0.0004 1.0276 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 1.0924 -2.6550 -0.6695 30 1 1.6418 -2.7908 1.0187 31 1 3.2562 -3.2348 -1.5247 32 1 2.9474 -4.3881 -0.2033 33 1 4.2822 -4.6743 3.5518 34 1 4.4630 -6.3901 3.1137 35 1 5.8673 -5.2991 3.0366 36 1 3.5648 -8.6904 1.6661 37 1 5.7852 -0.4022 -1.5914 38 1 6.3661 -2.0722 -1.3871 39 1 4.7909 -1.7657 -2.1574 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463513768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:33 Heat of formation + Delta-G solvation = 44.290086 kcal Electronic energy + Delta-G solvation = -22578.579717 eV Core-core repulsion = 19329.748778 eV Total energy + Delta-G solvation = -3248.830939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.26214 -39.49742 -36.66383 -34.78182 -34.00677 -32.29008 -31.60307 -30.29637 -28.76484 -27.47128 -25.41103 -24.45673 -24.01361 -22.39042 -21.14424 -19.90780 -18.12253 -17.22452 -16.98375 -16.40945 -16.30088 -15.55857 -14.80468 -14.65083 -14.40456 -14.04250 -13.63758 -13.35789 -13.22726 -12.87277 -12.57514 -12.47417 -12.25817 -12.12763 -11.81685 -11.66315 -11.43406 -11.17253 -11.10646 -10.96592 -10.65285 -10.38199 -10.34323 -10.23410 -10.08803 -9.22655 -8.99465 -8.85225 -8.55147 -8.49329 -6.25974 -4.35655 1.82389 2.40285 2.88244 3.17916 3.21462 3.24234 3.26047 3.43885 4.15117 4.26456 4.30584 4.42693 4.73184 4.88064 4.96335 5.05555 5.20865 5.21680 5.26591 5.44233 5.57214 5.60926 5.69514 5.75782 5.82035 5.90478 6.10087 6.13231 6.26513 6.59282 6.72093 6.81889 6.84880 6.95121 7.36815 7.58802 7.73519 7.87438 8.07507 8.65234 8.77127 8.89812 9.31197 10.79272 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024640 B = 0.005213 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.095234 B = 5369.658950 C = 5664.066075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.171 3.829 3 N -0.302 5.302 4 N -0.288 5.288 5 C 0.177 3.823 6 N -0.463 5.463 7 C 0.084 3.916 8 C 0.095 3.905 9 N -0.627 5.627 10 C 0.536 3.464 11 O -0.547 6.547 12 C 0.035 3.965 13 H 0.045 0.955 14 C -0.129 4.129 15 C -0.514 4.514 16 H 0.059 0.941 17 C 0.069 3.931 18 N -0.884 5.884 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.226 3.774 24 H 0.123 0.877 25 C -0.149 4.149 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.009 0.991 34 H 0.092 0.908 35 H 0.041 0.959 36 H 0.266 0.734 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.191 7.665 -5.162 12.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.097 4.097 3 N -0.144 5.144 4 N -0.127 5.127 5 C -0.092 4.092 6 N -0.154 5.154 7 C -0.039 4.039 8 C -0.029 4.029 9 N -0.363 5.363 10 C 0.328 3.672 11 O -0.423 6.423 12 C 0.014 3.986 13 H 0.063 0.937 14 C -0.187 4.187 15 C -0.552 4.552 16 H 0.077 0.923 17 C -0.134 4.134 18 N -0.522 5.522 19 Si 0.727 3.273 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.201 1.201 23 C 0.120 3.880 24 H 0.141 0.859 25 C -0.208 4.208 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.156 0.844 33 H 0.028 0.972 34 H 0.111 0.889 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.291 9.095 -4.789 12.602 hybrid contribution -0.193 -2.027 -0.600 2.122 sum -7.484 7.069 -5.388 11.619 Atomic orbital electron populations 1.20175 0.83793 1.04322 1.03963 1.24696 0.97055 0.83040 1.04865 1.74441 0.96138 1.23762 1.20013 1.73994 1.12172 1.07721 1.18793 1.24975 0.87164 0.92601 1.04451 1.45966 1.06753 1.08672 1.54034 1.22596 1.00202 0.76454 1.04685 1.22092 0.82373 1.01033 0.97353 1.48599 1.28221 1.12459 1.46985 1.22144 0.83535 0.86776 0.74699 1.90567 1.22799 1.75551 1.53359 1.18949 0.97081 0.86563 0.96027 0.93725 1.21678 0.99866 1.02714 0.94460 1.20715 1.26224 0.91247 1.17023 0.92262 1.24897 0.94712 0.98322 0.95454 1.69852 1.31845 1.17913 1.32569 0.86519 0.79810 0.80222 0.80736 1.19995 1.21068 1.20087 1.19541 0.88770 0.79387 1.00334 0.85948 1.22030 1.01001 1.03122 0.94637 0.89690 0.88849 0.90434 0.87789 0.88562 0.90459 0.84440 0.97198 0.88926 0.94020 0.92440 0.90774 0.90579 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.28 36.01 0.37 -0.16 16 2 C 0.17 2.33 8.06 -155.37 -1.25 1.08 16 3 N -0.30 -5.15 12.23 32.71 0.40 -4.75 16 4 N -0.29 -5.20 12.21 32.79 0.40 -4.80 16 5 C 0.18 2.91 7.16 -155.30 -1.11 1.80 16 6 N -0.46 -6.51 3.11 -110.81 -0.34 -6.85 16 7 C 0.08 0.96 6.92 -4.02 -0.03 0.93 16 8 C 0.10 1.32 6.07 -3.55 -0.02 1.30 16 9 N -0.63 -10.89 2.63 -165.83 -0.44 -11.33 16 10 C 0.54 11.54 6.64 -10.99 -0.07 11.47 16 11 O -0.55 -13.37 15.75 5.55 0.09 -13.28 16 12 C 0.03 0.79 1.86 -92.92 -0.17 0.62 16 13 H 0.05 0.98 6.16 -51.93 -0.32 0.66 16 14 C -0.13 -3.05 8.78 37.16 0.33 -2.72 16 15 C -0.51 -12.79 8.48 -34.44 -0.29 -13.08 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 17 C 0.07 1.72 5.29 -17.82 -0.09 1.62 16 18 N -0.88 -22.56 11.29 55.43 0.63 -21.93 16 19 Si 0.90 19.60 29.54 -169.99 -5.02 14.58 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.29 -6.17 7.11 56.52 0.40 -5.76 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 23 C 0.23 3.71 3.22 -68.38 -0.22 3.49 16 24 H 0.12 2.21 7.29 -51.93 -0.38 1.83 16 25 C -0.15 -2.10 9.45 37.16 0.35 -1.75 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.47 7.68 -51.93 -0.40 0.07 16 29 H 0.10 0.81 7.76 -51.93 -0.40 0.41 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.08 0.96 7.47 -51.93 -0.39 0.57 16 32 H 0.14 2.06 5.51 -51.93 -0.29 1.77 16 33 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.09 2.32 5.95 -51.93 -0.31 2.01 16 35 H 0.04 1.02 7.68 -51.93 -0.40 0.62 16 36 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 0.75 7.46 -51.93 -0.39 0.37 16 LS Contribution 318.16 15.07 4.79 4.79 Total: -1.00 -31.15 318.16 -7.06 -38.21 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.35 Total: 0.77 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -2.22 Total: 4.60 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.64 Total: -49.67 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.09 Total: -13.28 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.15 -7.06 -38.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463513768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.502 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds