Wall clock time and date at job start Tue Mar 31 2020 00:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30823 * 126.44406 * 2 1 4 4 N 1.28921 * 109.74309 * 180.35890 * 3 2 1 5 5 C 1.29724 * 109.42864 * 359.75885 * 4 3 2 6 6 N 1.34799 * 126.43948 * 180.02562 * 2 1 3 7 7 C 1.46219 * 128.60423 * 359.47000 * 6 2 1 8 8 C 1.53340 * 109.17489 * 161.79481 * 7 6 2 9 9 N 1.47076 * 109.23365 * 45.65743 * 8 7 6 10 10 C 1.34773 * 120.95270 * 116.39635 * 9 8 7 11 11 O 1.21287 * 120.00482 * 174.55480 * 10 9 8 12 12 C 1.50697 * 119.99643 * 354.55784 * 10 9 8 13 13 H 1.08998 * 109.47608 * 334.62441 * 12 10 9 14 14 C 1.53006 * 109.47144 * 214.62434 * 12 10 9 15 15 C 1.50704 * 109.47565 * 94.62775 * 12 10 9 16 16 H 1.08003 * 119.99443 * 0.02562 * 15 12 10 17 17 C 1.37873 * 120.00314 * 179.97438 * 15 12 10 18 18 N 1.31509 * 120.00017 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 119.99989 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46706 * 60.00486 * 19 17 15 21 21 H 1.48502 * 109.47038 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47095 * 300.00384 * 19 17 15 23 23 C 1.47527 * 118.10189 * 296.41608 * 9 8 7 24 24 H 1.08995 * 109.95822 * 162.50322 * 23 9 8 25 25 C 1.53003 * 109.95639 * 283.77668 * 23 9 8 26 26 H 1.08995 * 109.46654 * 269.97581 * 1 2 3 27 27 H 1.09002 * 109.46861 * 29.97054 * 1 2 3 28 28 H 1.08993 * 109.47067 * 149.97489 * 1 2 3 29 29 H 1.09005 * 109.52026 * 41.88828 * 7 6 2 30 30 H 1.08998 * 109.57032 * 281.73882 * 7 6 2 31 31 H 1.08997 * 109.50842 * 285.72998 * 8 7 6 32 32 H 1.09000 * 109.50914 * 165.58031 * 8 7 6 33 33 H 1.09004 * 109.47051 * 64.90752 * 14 12 10 34 34 H 1.08997 * 109.47162 * 184.90885 * 14 12 10 35 35 H 1.08998 * 109.47385 * 304.90925 * 14 12 10 36 36 H 0.97000 * 120.00236 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.46919 * 177.50867 * 25 23 9 38 38 H 1.08998 * 109.47155 * 297.51163 * 25 23 9 39 39 H 1.09005 * 109.46766 * 57.51169 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2842 1.0524 0.0000 4 7 3.5190 0.6819 -0.0076 5 6 3.5807 -0.6139 -0.0076 6 7 2.3077 -1.0844 -0.0005 7 6 1.9304 -2.4971 0.0095 8 6 3.1262 -3.3410 -0.4477 9 7 4.3393 -2.8760 0.2418 10 6 5.0080 -3.6835 1.0886 11 8 6.0591 -3.3189 1.5716 12 6 4.4497 -5.0397 1.4353 13 1 3.3671 -5.0302 1.3085 14 6 4.7900 -5.3749 2.8889 15 6 5.0529 -6.0789 0.5257 16 1 5.7693 -5.7865 -0.2278 17 6 4.6910 -7.4029 0.6562 18 7 3.8191 -7.7589 1.5740 19 14 5.4383 -8.6908 -0.4718 20 1 6.9132 -8.7034 -0.2999 21 1 4.8882 -10.0272 -0.1301 22 1 5.1070 -8.3656 -1.8824 23 6 4.8029 -1.5001 -0.0196 24 1 5.4972 -1.1870 0.7601 25 6 5.4854 -1.4300 -1.3872 26 1 -0.3632 -0.0004 1.0276 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 1.0924 -2.6550 -0.6695 30 1 1.6418 -2.7908 1.0187 31 1 3.2562 -3.2348 -1.5247 32 1 2.9474 -4.3881 -0.2033 33 1 4.2822 -4.6743 3.5518 34 1 4.4630 -6.3901 3.1137 35 1 5.8673 -5.2991 3.0366 36 1 3.5648 -8.6904 1.6661 37 1 5.7852 -0.4022 -1.5914 38 1 6.3661 -2.0722 -1.3871 39 1 4.7909 -1.7657 -2.1574 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463513768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:32 Heat of formation + Delta-G solvation = 25.844723 kcal Electronic energy + Delta-G solvation = -22579.379568 eV Core-core repulsion = 19329.748778 eV Total energy + Delta-G solvation = -3249.630790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.41440 -41.04909 -38.07672 -36.09709 -35.71788 -33.62856 -32.69682 -32.00155 -29.95338 -28.44863 -27.32700 -25.88312 -25.17580 -23.95237 -22.21504 -21.31999 -19.52297 -18.63282 -18.50151 -17.86017 -17.67531 -16.95118 -16.36577 -16.06321 -15.64728 -15.21203 -14.99622 -14.85128 -14.15412 -14.06260 -13.77400 -13.58907 -13.54341 -13.40204 -13.20859 -13.04265 -12.88602 -12.75669 -12.70777 -12.47933 -12.38385 -12.17384 -12.05794 -11.50201 -11.15115 -11.11273 -10.65702 -10.36768 -10.19007 -9.90886 -8.16422 -6.31570 0.71886 1.31818 1.45479 1.48697 1.54277 1.68381 1.76579 1.86144 2.45450 2.98299 3.13223 3.33537 3.45978 3.72911 3.90463 3.98304 4.08094 4.10070 4.20632 4.45950 4.54219 4.61158 4.64547 4.69509 4.73103 4.84108 4.90172 4.94961 4.98440 5.04187 5.07764 5.15319 5.37338 5.46700 5.66196 5.81619 5.85399 6.11714 6.34975 6.71030 7.22828 7.38529 7.60040 8.87993 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024640 B = 0.005213 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.095234 B = 5369.658950 C = 5664.066075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.188 3.812 3 N -0.344 5.344 4 N -0.317 5.317 5 C 0.165 3.835 6 N -0.464 5.464 7 C 0.087 3.913 8 C 0.089 3.911 9 N -0.620 5.620 10 C 0.535 3.465 11 O -0.587 6.587 12 C 0.035 3.965 13 H 0.057 0.943 14 C -0.122 4.122 15 C -0.527 4.527 16 H 0.046 0.954 17 C 0.034 3.966 18 N -0.902 5.902 19 Si 0.953 3.047 20 H -0.284 1.284 21 H -0.280 1.280 22 H -0.264 1.264 23 C 0.228 3.772 24 H 0.098 0.902 25 C -0.139 4.139 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.153 0.847 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.128 0.872 33 H 0.023 0.977 34 H 0.078 0.922 35 H 0.020 0.980 36 H 0.268 0.732 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.522 7.343 -6.620 14.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 N -0.185 5.185 4 N -0.156 5.156 5 C -0.105 4.105 6 N -0.154 5.154 7 C -0.035 4.035 8 C -0.033 4.033 9 N -0.354 5.354 10 C 0.328 3.672 11 O -0.466 6.466 12 C 0.014 3.986 13 H 0.075 0.925 14 C -0.180 4.180 15 C -0.565 4.565 16 H 0.065 0.935 17 C -0.167 4.167 18 N -0.540 5.540 19 Si 0.779 3.221 20 H -0.210 1.210 21 H -0.205 1.205 22 H -0.189 1.189 23 C 0.122 3.878 24 H 0.116 0.884 25 C -0.198 4.198 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.170 0.830 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.146 0.854 33 H 0.042 0.958 34 H 0.096 0.904 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.670 8.787 -6.278 14.496 hybrid contribution 0.467 -1.900 -0.125 1.960 sum -9.204 6.887 -6.402 13.158 Atomic orbital electron populations 1.20494 0.79802 1.06409 1.05520 1.25649 0.98874 0.81906 1.01561 1.74376 0.96157 1.25544 1.22421 1.73902 1.13338 1.08686 1.19708 1.24765 0.87992 0.92310 1.05416 1.46137 1.05895 1.09772 1.53629 1.22792 1.00100 0.74395 1.06261 1.22315 0.81802 1.00994 0.98205 1.48472 1.28835 1.12340 1.45762 1.21848 0.83254 0.86875 0.75256 1.90544 1.24510 1.76363 1.55223 1.18875 0.97640 0.87070 0.94986 0.92514 1.21562 0.98537 1.02183 0.95760 1.20822 1.26236 0.92182 1.17254 0.93550 1.25477 0.94984 0.99689 0.96531 1.69921 1.32435 1.18322 1.33322 0.85683 0.78332 0.78297 0.79788 1.21013 1.20534 1.18881 1.19480 0.88883 0.78684 1.00769 0.88412 1.21952 1.00685 1.03611 0.93564 0.88201 0.87813 0.87306 0.82959 0.88114 0.88457 0.85417 0.95820 0.90368 0.96050 0.92270 0.89839 0.91436 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.28 71.24 0.73 -0.05 16 2 C 0.19 4.61 8.06 138.11 1.11 5.72 16 3 N -0.34 -11.35 12.23 -50.41 -0.62 -11.97 16 4 N -0.32 -11.40 12.21 -50.19 -0.61 -12.02 16 5 C 0.17 5.30 7.16 138.22 0.99 6.29 16 6 N -0.46 -11.82 3.11 -504.50 -1.57 -13.39 16 7 C 0.09 1.65 6.92 86.55 0.60 2.25 16 8 C 0.09 2.26 6.07 86.38 0.52 2.78 16 9 N -0.62 -21.20 2.63 -796.94 -2.10 -23.29 16 10 C 0.54 23.32 6.64 87.66 0.58 23.90 16 11 O -0.59 -29.61 15.75 -3.05 -0.05 -29.66 16 12 C 0.04 1.61 1.86 -12.28 -0.02 1.59 16 13 H 0.06 2.44 6.16 -2.39 -0.01 2.43 16 14 C -0.12 -5.86 8.78 71.98 0.63 -5.22 16 15 C -0.53 -26.22 8.48 25.60 0.22 -26.00 16 16 H 0.05 2.38 7.74 -2.91 -0.02 2.36 16 17 C 0.03 1.69 5.29 84.65 0.45 2.14 16 18 N -0.90 -45.48 11.29 21.44 0.24 -45.24 16 19 Si 0.95 39.55 29.54 68.60 2.03 41.58 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 23 C 0.23 7.50 3.22 44.14 0.14 7.64 16 24 H 0.10 3.69 7.29 -2.39 -0.02 3.67 16 25 C -0.14 -3.86 9.45 71.98 0.68 -3.18 16 26 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.11 0.69 7.68 -2.39 -0.02 0.67 16 29 H 0.15 1.48 7.76 -2.38 -0.02 1.46 16 30 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.10 2.10 7.47 -2.39 -0.02 2.09 16 32 H 0.13 3.57 5.51 -2.39 -0.01 3.56 16 33 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.08 3.96 5.95 -2.39 -0.01 3.95 16 35 H 0.02 1.05 7.68 -2.39 -0.02 1.04 16 36 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 37 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 1.75 7.46 -2.38 -0.02 1.73 16 Total: -1.00 -68.84 318.16 5.02 -63.82 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 1.06 Total: 12.32 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 6.64 Total: 17.85 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -4.66 Total: -105.91 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.05 Total: -29.66 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -68.84 5.02 -63.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463513768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.666 kcal (2) G-P(sol) polarization free energy of solvation -68.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds