Wall clock time and date at job start Tue Mar 31 2020 00:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30820 * 126.43883 * 2 1 4 4 N 1.29159 * 109.72104 * 180.27536 * 3 2 1 5 5 C 1.29727 * 109.40764 * 359.96939 * 4 3 2 6 6 N 1.34790 * 126.43901 * 180.02562 * 2 1 3 7 7 C 1.46222 * 128.60422 * 359.49878 * 6 2 1 8 8 C 1.53329 * 109.22972 * 161.81188 * 7 6 2 9 9 N 1.47077 * 109.24256 * 45.60381 * 8 7 6 10 10 C 1.34773 * 120.95318 * 116.39269 * 9 8 7 11 11 O 1.21279 * 119.99994 * 174.25058 * 10 9 8 12 12 C 1.50695 * 119.99933 * 354.25910 * 10 9 8 13 13 H 1.09003 * 109.47310 * 314.43378 * 12 10 9 14 14 C 1.52998 * 109.47468 * 74.43215 * 12 10 9 15 15 C 1.50703 * 109.47226 * 194.43165 * 12 10 9 16 16 H 1.07993 * 120.00087 * 359.97438 * 15 12 10 17 17 C 1.37876 * 119.99733 * 179.97438 * 15 12 10 18 18 N 1.31512 * 120.00642 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99674 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47380 * 90.00042 * 19 17 15 21 21 H 1.48501 * 109.47295 * 210.00385 * 19 17 15 22 22 H 1.48500 * 109.47171 * 329.99945 * 19 17 15 23 23 C 1.47528 * 118.09748 * 296.42110 * 9 8 7 24 24 H 1.09003 * 109.95918 * 283.78591 * 23 9 8 25 25 C 1.52999 * 109.95770 * 162.51101 * 23 9 8 26 26 H 1.09003 * 109.47251 * 269.97807 * 1 2 3 27 27 H 1.09003 * 109.47320 * 29.97296 * 1 2 3 28 28 H 1.09002 * 109.47598 * 149.97530 * 1 2 3 29 29 H 1.09003 * 109.51570 * 41.87288 * 7 6 2 30 30 H 1.09003 * 109.52157 * 281.75657 * 7 6 2 31 31 H 1.08999 * 109.51320 * 165.53672 * 8 7 6 32 32 H 1.09003 * 109.50995 * 285.62925 * 8 7 6 33 33 H 1.09007 * 109.47493 * 175.67521 * 14 12 10 34 34 H 1.09000 * 109.47538 * 295.67612 * 14 12 10 35 35 H 1.08998 * 109.46973 * 55.67359 * 14 12 10 36 36 H 0.96998 * 120.00551 * 180.02562 * 18 17 15 37 37 H 1.08990 * 109.47343 * 70.25860 * 25 23 9 38 38 H 1.09007 * 109.47177 * 190.26279 * 25 23 9 39 39 H 1.09005 * 109.47077 * 310.25599 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2840 1.0524 0.0000 4 7 3.5210 0.6809 -0.0058 5 6 3.5818 -0.6149 -0.0091 6 7 2.3076 -1.0844 -0.0005 7 6 1.9302 -2.4970 0.0089 8 6 3.1255 -3.3421 -0.4474 9 7 4.3389 -2.8774 0.2417 10 6 5.0070 -3.6847 1.0892 11 8 6.0610 -3.3227 1.5676 12 6 4.4443 -5.0374 1.4423 13 1 3.3824 -4.9414 1.6689 14 6 4.6293 -5.9911 0.2604 15 6 5.1676 -5.5836 2.6464 16 1 5.9560 -5.0089 3.1093 17 6 4.8225 -6.8170 3.1569 18 7 3.8627 -7.5171 2.5929 19 14 5.7185 -7.4937 4.6498 20 1 5.0171 -7.0626 5.8856 21 1 5.7395 -8.9771 4.5843 22 1 7.1115 -6.9793 4.6663 23 6 4.8035 -1.5020 -0.0207 24 1 5.2895 -1.4530 -0.9952 25 6 5.7785 -1.0624 1.0733 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5142 29 1 1.0923 -2.6546 -0.6703 30 1 1.6411 -2.7901 1.0182 31 1 2.9460 -4.3889 -0.2024 32 1 3.2552 -3.2374 -1.5246 33 1 4.2926 -6.9888 0.5423 34 1 4.0439 -5.6364 -0.5879 35 1 5.6831 -6.0278 -0.0154 36 1 3.6197 -8.3847 2.9523 37 1 6.7127 -1.6144 0.9706 38 1 5.9750 0.0055 0.9772 39 1 5.3424 -1.2649 2.0515 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463513775.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:39 Heat of formation + Delta-G solvation = 58.259575 kcal Electronic energy + Delta-G solvation = -22642.688481 eV Core-core repulsion = 19394.463304 eV Total energy + Delta-G solvation = -3248.225177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.24222 -39.68779 -36.54553 -34.78341 -34.04906 -32.43081 -31.65740 -30.20486 -28.58841 -27.36030 -25.37575 -24.85004 -23.49110 -22.48629 -21.00001 -20.26878 -18.35962 -17.26229 -16.75727 -16.50908 -15.68229 -15.51439 -15.34871 -14.61255 -14.40587 -14.03934 -13.52125 -13.32526 -13.19286 -12.92447 -12.79237 -12.52763 -12.25153 -11.89959 -11.84455 -11.50219 -11.38711 -11.16049 -11.06795 -10.79805 -10.64452 -10.44122 -10.36285 -10.10862 -10.06249 -9.15746 -9.03481 -8.63219 -8.50131 -8.28016 -6.16645 -4.20295 1.81445 2.37576 2.86905 3.15361 3.26013 3.32687 3.40426 3.42403 4.15045 4.27386 4.35311 4.37180 4.69853 4.81586 4.90168 5.16687 5.17368 5.24348 5.29349 5.37063 5.52388 5.58456 5.66457 5.77573 5.92158 6.03762 6.14105 6.31270 6.40391 6.56111 6.64113 6.76833 6.81237 6.85808 7.23087 7.58741 7.75654 7.92196 8.17809 8.75602 8.87355 8.96500 9.45973 10.90634 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025774 B = 0.005101 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.091179 B = 5487.870489 C = 5885.488467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.172 3.828 3 N -0.303 5.303 4 N -0.286 5.286 5 C 0.174 3.826 6 N -0.465 5.465 7 C 0.084 3.916 8 C 0.093 3.907 9 N -0.634 5.634 10 C 0.529 3.471 11 O -0.523 6.523 12 C 0.033 3.967 13 H 0.047 0.953 14 C -0.138 4.138 15 C -0.502 4.502 16 H 0.073 0.927 17 C 0.060 3.940 18 N -0.896 5.896 19 Si 0.900 3.100 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.272 1.272 23 C 0.233 3.767 24 H 0.095 0.905 25 C -0.135 4.135 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.131 0.869 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.016 0.984 35 H 0.034 0.966 36 H 0.262 0.738 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.866 7.097 -8.181 13.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.095 4.095 3 N -0.144 5.144 4 N -0.125 5.125 5 C -0.095 4.095 6 N -0.157 5.157 7 C -0.040 4.040 8 C -0.031 4.031 9 N -0.372 5.372 10 C 0.321 3.679 11 O -0.396 6.396 12 C 0.012 3.988 13 H 0.065 0.935 14 C -0.196 4.196 15 C -0.540 4.540 16 H 0.092 0.908 17 C -0.140 4.140 18 N -0.535 5.535 19 Si 0.728 3.272 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.196 1.196 23 C 0.127 3.873 24 H 0.113 0.887 25 C -0.193 4.193 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.149 0.851 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.035 0.965 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.077 0.923 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.931 8.527 -7.862 13.512 hybrid contribution -0.305 -1.734 0.704 1.896 sum -7.236 6.794 -7.158 12.237 Atomic orbital electron populations 1.20180 0.83789 1.04292 1.04015 1.24689 0.97041 0.83031 1.04730 1.74526 0.96141 1.23702 1.20052 1.74062 1.12039 1.07720 1.18691 1.25153 0.87205 0.92737 1.04380 1.45971 1.06778 1.08578 1.54328 1.22559 0.99938 0.76633 1.04821 1.22171 0.82989 1.00723 0.97222 1.48750 1.28263 1.12653 1.47569 1.22093 0.83907 0.87063 0.74837 1.90555 1.22544 1.74591 1.51945 1.18909 0.97672 0.85917 0.96339 0.93499 1.21882 0.99184 1.04036 0.94519 1.21095 1.19284 1.02881 1.10739 0.90838 1.24923 0.95132 0.96602 0.97392 1.69832 1.29713 1.13282 1.40703 0.86442 0.80420 0.77796 0.82554 1.20659 1.21190 1.19630 1.19712 0.87628 0.78530 1.01401 0.88737 1.22104 0.99799 1.00531 0.96851 0.89647 0.88832 0.90465 0.87835 0.88425 0.85133 0.90499 0.88375 0.96485 0.94722 0.92815 0.88434 0.92269 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.28 36.00 0.37 -0.16 16 2 C 0.17 2.35 8.06 -155.38 -1.25 1.10 16 3 N -0.30 -5.18 12.24 32.71 0.40 -4.78 16 4 N -0.29 -5.17 12.16 32.80 0.40 -4.77 16 5 C 0.17 2.85 7.17 -155.23 -1.11 1.73 16 6 N -0.47 -6.48 3.11 -110.80 -0.35 -6.83 16 7 C 0.08 0.92 6.92 -4.02 -0.03 0.90 16 8 C 0.09 1.17 5.67 -3.56 -0.02 1.15 16 9 N -0.63 -10.53 2.97 -165.83 -0.49 -11.02 16 10 C 0.53 11.06 6.63 -10.99 -0.07 10.99 16 11 O -0.52 -12.33 11.77 5.56 0.07 -12.26 16 12 C 0.03 0.74 1.78 -92.93 -0.17 0.57 16 13 H 0.05 1.07 7.39 -51.93 -0.38 0.68 16 14 C -0.14 -2.88 8.67 37.16 0.32 -2.56 16 15 C -0.50 -13.32 8.36 -34.44 -0.29 -13.61 16 16 H 0.07 2.08 6.85 -52.49 -0.36 1.72 16 17 C 0.06 1.58 5.29 -17.82 -0.09 1.49 16 18 N -0.90 -23.51 11.30 55.43 0.63 -22.89 16 19 Si 0.90 20.89 29.54 -169.99 -5.02 15.86 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.23 3.73 3.84 -68.39 -0.26 3.47 16 24 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 25 C -0.13 -2.32 7.71 37.16 0.29 -2.03 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.46 7.68 -51.93 -0.40 0.06 16 29 H 0.10 0.74 7.76 -51.93 -0.40 0.34 16 30 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.13 1.70 4.28 -51.93 -0.22 1.48 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.10 2.28 5.97 -51.93 -0.31 1.97 16 34 H 0.02 0.28 5.89 -51.93 -0.31 -0.03 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 37 H 0.10 1.77 6.36 -51.93 -0.33 1.44 16 38 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 39 H 0.06 1.19 7.44 -51.93 -0.39 0.81 16 LS Contribution 309.66 15.07 4.67 4.67 Total: -1.00 -31.90 309.66 -7.21 -39.11 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.19 Total: -0.13 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -2.32 Total: 3.04 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.59 Total: -50.29 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.07 Total: -12.26 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.90 -7.21 -39.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463513775.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.370 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds