Wall clock time and date at job start Tue Mar 31 2020 00:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30820 * 126.43883 * 2 1 4 4 N 1.29159 * 109.72104 * 180.27536 * 3 2 1 5 5 C 1.29727 * 109.40764 * 359.96939 * 4 3 2 6 6 N 1.34790 * 126.43901 * 180.02562 * 2 1 3 7 7 C 1.46222 * 128.60422 * 359.49878 * 6 2 1 8 8 C 1.53329 * 109.22972 * 161.81188 * 7 6 2 9 9 N 1.47077 * 109.24256 * 45.60381 * 8 7 6 10 10 C 1.34773 * 120.95318 * 116.39269 * 9 8 7 11 11 O 1.21279 * 119.99994 * 174.25058 * 10 9 8 12 12 C 1.50695 * 119.99933 * 354.25910 * 10 9 8 13 13 H 1.09003 * 109.47310 * 314.43378 * 12 10 9 14 14 C 1.52998 * 109.47468 * 74.43215 * 12 10 9 15 15 C 1.50703 * 109.47226 * 194.43165 * 12 10 9 16 16 H 1.07993 * 120.00087 * 359.97438 * 15 12 10 17 17 C 1.37876 * 119.99733 * 179.97438 * 15 12 10 18 18 N 1.31512 * 120.00642 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99674 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47380 * 90.00042 * 19 17 15 21 21 H 1.48501 * 109.47295 * 210.00385 * 19 17 15 22 22 H 1.48500 * 109.47171 * 329.99945 * 19 17 15 23 23 C 1.47528 * 118.09748 * 296.42110 * 9 8 7 24 24 H 1.09003 * 109.95918 * 283.78591 * 23 9 8 25 25 C 1.52999 * 109.95770 * 162.51101 * 23 9 8 26 26 H 1.09003 * 109.47251 * 269.97807 * 1 2 3 27 27 H 1.09003 * 109.47320 * 29.97296 * 1 2 3 28 28 H 1.09002 * 109.47598 * 149.97530 * 1 2 3 29 29 H 1.09003 * 109.51570 * 41.87288 * 7 6 2 30 30 H 1.09003 * 109.52157 * 281.75657 * 7 6 2 31 31 H 1.08999 * 109.51320 * 165.53672 * 8 7 6 32 32 H 1.09003 * 109.50995 * 285.62925 * 8 7 6 33 33 H 1.09007 * 109.47493 * 175.67521 * 14 12 10 34 34 H 1.09000 * 109.47538 * 295.67612 * 14 12 10 35 35 H 1.08998 * 109.46973 * 55.67359 * 14 12 10 36 36 H 0.96998 * 120.00551 * 180.02562 * 18 17 15 37 37 H 1.08990 * 109.47343 * 70.25860 * 25 23 9 38 38 H 1.09007 * 109.47177 * 190.26279 * 25 23 9 39 39 H 1.09005 * 109.47077 * 310.25599 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2840 1.0524 0.0000 4 7 3.5210 0.6809 -0.0058 5 6 3.5818 -0.6149 -0.0091 6 7 2.3076 -1.0844 -0.0005 7 6 1.9302 -2.4970 0.0089 8 6 3.1255 -3.3421 -0.4474 9 7 4.3389 -2.8774 0.2417 10 6 5.0070 -3.6847 1.0892 11 8 6.0610 -3.3227 1.5676 12 6 4.4443 -5.0374 1.4423 13 1 3.3824 -4.9414 1.6689 14 6 4.6293 -5.9911 0.2604 15 6 5.1676 -5.5836 2.6464 16 1 5.9560 -5.0089 3.1093 17 6 4.8225 -6.8170 3.1569 18 7 3.8627 -7.5171 2.5929 19 14 5.7185 -7.4937 4.6498 20 1 5.0171 -7.0626 5.8856 21 1 5.7395 -8.9771 4.5843 22 1 7.1115 -6.9793 4.6663 23 6 4.8035 -1.5020 -0.0207 24 1 5.2895 -1.4530 -0.9952 25 6 5.7785 -1.0624 1.0733 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5142 29 1 1.0923 -2.6546 -0.6703 30 1 1.6411 -2.7901 1.0182 31 1 2.9460 -4.3889 -0.2024 32 1 3.2552 -3.2374 -1.5246 33 1 4.2926 -6.9888 0.5423 34 1 4.0439 -5.6364 -0.5879 35 1 5.6831 -6.0278 -0.0154 36 1 3.6197 -8.3847 2.9523 37 1 6.7127 -1.6144 0.9706 38 1 5.9750 0.0055 0.9772 39 1 5.3424 -1.2649 2.0515 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463513775.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:34 Heat of formation + Delta-G solvation = 38.489988 kcal Electronic energy + Delta-G solvation = -22643.545755 eV Core-core repulsion = 19394.463304 eV Total energy + Delta-G solvation = -3249.082450 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 3.58 seconds Orbital eigenvalues (eV) -44.37455 -41.18067 -37.87027 -36.22227 -35.61848 -33.87314 -32.74388 -31.82281 -29.74164 -28.39452 -27.27758 -26.20376 -24.64510 -24.09327 -22.04847 -21.60761 -19.77944 -18.54773 -18.33299 -17.81408 -17.08695 -16.99699 -16.71815 -16.34990 -15.45482 -15.15051 -14.96221 -14.71418 -14.49298 -14.06212 -13.92990 -13.68906 -13.40600 -13.18199 -13.08291 -12.98943 -12.94895 -12.73083 -12.64288 -12.51793 -12.24561 -12.17970 -12.01754 -11.49607 -11.13146 -11.06493 -10.54492 -10.23109 -10.02181 -9.79956 -8.16263 -6.25155 0.72518 1.32410 1.39748 1.42582 1.52550 1.67888 1.78065 1.92630 2.44200 3.00298 3.14131 3.32107 3.45833 3.71678 3.88851 4.00285 4.07888 4.10909 4.23397 4.41986 4.57777 4.62386 4.67414 4.71795 4.73043 4.87382 4.89549 4.94192 4.99439 5.05370 5.09482 5.21978 5.42453 5.48582 5.74121 5.82342 5.94942 6.18391 6.45039 6.81091 7.34666 7.44759 7.59933 8.88807 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025774 B = 0.005101 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.091179 B = 5487.870489 C = 5885.488467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.188 3.812 3 N -0.347 5.347 4 N -0.317 5.317 5 C 0.162 3.838 6 N -0.466 5.466 7 C 0.084 3.916 8 C 0.085 3.915 9 N -0.627 5.627 10 C 0.529 3.471 11 O -0.561 6.561 12 C 0.033 3.967 13 H 0.047 0.953 14 C -0.126 4.126 15 C -0.528 4.528 16 H 0.044 0.956 17 C 0.027 3.973 18 N -0.905 5.905 19 Si 0.947 3.053 20 H -0.277 1.277 21 H -0.275 1.275 22 H -0.282 1.282 23 C 0.236 3.764 24 H 0.116 0.884 25 C -0.123 4.123 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.155 0.845 30 H 0.094 0.906 31 H 0.129 0.871 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.020 0.980 36 H 0.265 0.735 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.213 6.709 -9.587 15.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 N -0.187 5.187 4 N -0.156 5.156 5 C -0.108 4.108 6 N -0.157 5.157 7 C -0.038 4.038 8 C -0.037 4.037 9 N -0.364 5.364 10 C 0.321 3.679 11 O -0.438 6.438 12 C 0.012 3.988 13 H 0.065 0.935 14 C -0.184 4.184 15 C -0.566 4.566 16 H 0.063 0.937 17 C -0.173 4.173 18 N -0.544 5.544 19 Si 0.773 3.227 20 H -0.203 1.203 21 H -0.200 1.200 22 H -0.207 1.207 23 C 0.130 3.870 24 H 0.133 0.867 25 C -0.181 4.181 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.128 0.872 29 H 0.172 0.828 30 H 0.112 0.888 31 H 0.147 0.853 32 H 0.126 0.874 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.329 8.138 -9.298 15.483 hybrid contribution 0.354 -1.581 1.137 1.979 sum -8.975 6.558 -8.162 13.790 Atomic orbital electron populations 1.20489 0.79881 1.06459 1.05409 1.25631 0.98859 0.81993 1.01522 1.74454 0.96223 1.25560 1.22500 1.73963 1.13170 1.08782 1.19659 1.24996 0.88140 0.92458 1.05222 1.46163 1.05904 1.09778 1.53826 1.22799 1.00455 0.74546 1.06047 1.22489 0.81805 1.00874 0.98570 1.48572 1.29038 1.12345 1.46406 1.21737 0.83685 0.87103 0.75399 1.90547 1.24279 1.75305 1.53710 1.18801 0.96980 0.87293 0.95732 0.93480 1.21707 0.98953 1.02396 0.95338 1.21241 1.19379 1.03334 1.12689 0.93750 1.25434 0.95809 0.96723 0.99291 1.69885 1.29923 1.13391 1.41174 0.85727 0.78916 0.77700 0.80331 1.20251 1.19988 1.20731 1.19695 0.87648 0.78010 1.01601 0.86664 1.21900 0.99434 1.00894 0.95874 0.88439 0.87797 0.87183 0.82766 0.88779 0.85318 0.87425 0.90663 0.92017 0.96112 0.92520 0.89776 0.91320 0.95070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.79 10.28 71.23 0.73 -0.05 16 2 C 0.19 4.61 8.06 138.11 1.11 5.72 16 3 N -0.35 -11.46 12.24 -50.42 -0.62 -12.08 16 4 N -0.32 -11.31 12.16 -50.14 -0.61 -11.92 16 5 C 0.16 5.09 7.17 138.20 0.99 6.08 16 6 N -0.47 -11.66 3.11 -504.45 -1.57 -13.23 16 7 C 0.08 1.49 6.92 86.54 0.60 2.09 16 8 C 0.08 1.85 5.67 86.38 0.49 2.34 16 9 N -0.63 -20.02 2.97 -796.96 -2.37 -22.38 16 10 C 0.53 22.26 6.63 87.66 0.58 22.84 16 11 O -0.56 -27.48 11.77 -3.03 -0.04 -27.51 16 12 C 0.03 1.49 1.78 -12.29 -0.02 1.47 16 13 H 0.05 2.11 7.39 -2.39 -0.02 2.09 16 14 C -0.13 -5.12 8.67 71.98 0.62 -4.49 16 15 C -0.53 -28.66 8.36 25.60 0.21 -28.45 16 16 H 0.04 2.62 6.85 -2.91 -0.02 2.60 16 17 C 0.03 1.43 5.29 84.65 0.45 1.88 16 18 N -0.90 -47.01 11.30 21.45 0.24 -46.77 16 19 Si 0.95 43.04 29.54 68.60 2.03 45.06 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 23 C 0.24 7.37 3.84 44.14 0.17 7.54 16 24 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 25 C -0.12 -4.36 7.71 71.98 0.56 -3.80 16 26 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.11 0.66 7.68 -2.39 -0.02 0.65 16 29 H 0.15 1.24 7.76 -2.39 -0.02 1.22 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.13 2.90 4.28 -2.39 -0.01 2.89 16 32 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 3.44 5.97 -2.38 -0.01 3.42 16 34 H 0.06 1.90 5.89 -2.39 -0.01 1.88 16 35 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 37 H 0.08 3.19 6.36 -2.39 -0.02 3.18 16 38 H 0.07 2.24 8.09 -2.38 -0.02 2.22 16 39 H 0.03 1.26 7.44 -2.38 -0.02 1.24 16 Total: -1.00 -72.21 309.66 4.63 -67.58 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.07 Total: 8.08 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 6.50 Total: 13.17 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -4.92 Total: -106.38 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.04 Total: -27.51 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -72.21 4.63 -67.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463513775.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.068 kcal (2) G-P(sol) polarization free energy of solvation -72.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.58 seconds