Wall clock time and date at job start Tue Mar 31 2020 00:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30822 * 126.44044 * 2 1 4 4 N 1.28924 * 109.74200 * 180.16289 * 3 2 1 5 5 C 1.29729 * 109.42632 * 0.10463 * 4 3 2 6 6 N 1.34785 * 126.43847 * 180.02562 * 2 1 3 7 7 C 1.46224 * 128.60711 * 359.50279 * 6 2 1 8 8 C 1.53327 * 109.18197 * 161.67374 * 7 6 2 9 9 N 1.47075 * 109.25449 * 45.62830 * 8 7 6 10 10 C 1.34776 * 120.94861 * 116.43093 * 9 8 7 11 11 O 1.21277 * 120.00283 * 185.73728 * 10 9 8 12 12 C 1.50702 * 119.99697 * 5.73330 * 10 9 8 13 13 H 1.09000 * 109.47306 * 39.94299 * 12 10 9 14 14 C 1.52991 * 109.47372 * 279.93985 * 12 10 9 15 15 C 1.50700 * 109.46821 * 159.93992 * 12 10 9 16 16 H 1.08006 * 120.00297 * 0.02562 * 15 12 10 17 17 C 1.37881 * 119.99932 * 180.27431 * 15 12 10 18 18 N 1.31508 * 120.00113 * 359.72952 * 17 15 12 19 19 Si 1.86801 * 119.99652 * 179.72409 * 17 15 12 20 20 H 1.48492 * 109.47629 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.46808 * 120.00687 * 19 17 15 22 22 H 1.48501 * 109.47076 * 239.99807 * 19 17 15 23 23 C 1.47521 * 118.10391 * 296.70312 * 9 8 7 24 24 H 1.08996 * 109.96215 * 283.57158 * 23 9 8 25 25 C 1.52998 * 109.95722 * 162.28764 * 23 9 8 26 26 H 1.09003 * 109.46922 * 269.97166 * 1 2 3 27 27 H 1.08999 * 109.46977 * 29.96963 * 1 2 3 28 28 H 1.08997 * 109.47143 * 149.97274 * 1 2 3 29 29 H 1.09002 * 109.52150 * 41.75612 * 7 6 2 30 30 H 1.09006 * 109.56449 * 281.61478 * 7 6 2 31 31 H 1.09001 * 109.50784 * 285.69068 * 8 7 6 32 32 H 1.09001 * 109.54172 * 165.58742 * 8 7 6 33 33 H 1.08999 * 109.47261 * 184.38187 * 14 12 10 34 34 H 1.09004 * 109.47518 * 304.38150 * 14 12 10 35 35 H 1.08996 * 109.47517 * 64.38165 * 14 12 10 36 36 H 0.96999 * 119.99966 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.46941 * 68.40692 * 25 23 9 38 38 H 1.09001 * 109.47350 * 188.40451 * 25 23 9 39 39 H 1.09005 * 109.47301 * 308.40614 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2841 1.0524 0.0000 4 7 3.5190 0.6820 -0.0034 5 6 3.5807 -0.6138 -0.0080 6 7 2.3076 -1.0843 -0.0005 7 6 1.9303 -2.4970 0.0088 8 6 3.1253 -3.3407 -0.4509 9 7 4.3399 -2.8762 0.2363 10 6 5.0105 -3.6847 1.0807 11 8 5.9482 -3.2529 1.7173 12 6 4.5951 -5.1252 1.2340 13 1 4.3267 -5.5317 0.2589 14 6 3.3895 -5.2113 2.1719 15 6 5.7386 -5.9189 1.8116 16 1 6.6725 -5.4291 2.0448 17 6 5.5942 -7.2714 2.0376 18 7 4.4569 -7.8677 1.7541 19 14 7.0142 -8.2566 2.7463 20 1 8.1740 -7.3582 2.9764 21 1 6.5985 -8.8675 4.0345 22 1 7.3987 -9.3275 1.7921 23 6 4.7997 -1.4982 -0.0204 24 1 5.2854 -1.4434 -0.9946 25 6 5.7732 -1.0599 1.0755 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 1.0911 -2.6544 -0.6688 30 1 1.6434 -2.7916 1.0183 31 1 3.2532 -3.2340 -1.5281 32 1 2.9473 -4.3881 -0.2075 33 1 3.1374 -6.2576 2.3445 34 1 3.6330 -4.7348 3.1215 35 1 2.5389 -4.7029 1.7180 36 1 4.3555 -8.8192 1.9127 37 1 6.6972 -1.6318 0.9906 38 1 5.9918 0.0021 0.9638 39 1 5.3243 -1.2377 2.0527 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463513792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:43 Heat of formation + Delta-G solvation = 58.470998 kcal Electronic energy + Delta-G solvation = -22659.603129 eV Core-core repulsion = 19411.387120 eV Total energy + Delta-G solvation = -3248.216009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.29222 -39.70279 -36.56660 -34.81383 -34.02949 -32.44509 -31.67043 -30.21041 -28.64496 -27.37366 -25.34776 -24.79814 -23.60641 -22.41894 -21.02632 -20.44159 -18.21632 -17.25312 -16.78093 -16.55543 -15.77276 -15.60561 -15.26445 -14.59710 -14.41941 -14.01910 -13.72046 -13.28374 -13.04830 -12.88319 -12.81010 -12.52508 -12.22552 -11.91309 -11.85724 -11.64523 -11.33423 -11.22784 -11.09505 -10.77004 -10.73207 -10.46145 -10.36083 -10.11523 -10.08448 -9.14463 -9.04303 -8.58579 -8.50868 -8.26287 -6.17178 -4.20786 1.79473 2.35714 2.86427 3.15262 3.24494 3.33006 3.38691 3.44162 4.13922 4.26630 4.33209 4.37401 4.68325 4.78691 4.88462 5.15282 5.17718 5.22480 5.29730 5.36025 5.50259 5.57454 5.65596 5.76665 5.91052 6.04851 6.12996 6.32957 6.38576 6.57122 6.62034 6.76570 6.80324 6.86038 7.21685 7.58210 7.74723 7.91283 8.17143 8.75419 8.86428 8.96074 9.45369 10.90187 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031942 B = 0.004948 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.378258 B = 5657.411591 C = 6283.101185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.170 3.830 3 N -0.302 5.302 4 N -0.285 5.285 5 C 0.174 3.826 6 N -0.465 5.465 7 C 0.086 3.914 8 C 0.095 3.905 9 N -0.633 5.633 10 C 0.529 3.471 11 O -0.523 6.523 12 C 0.032 3.968 13 H 0.049 0.951 14 C -0.134 4.134 15 C -0.501 4.501 16 H 0.073 0.927 17 C 0.060 3.940 18 N -0.896 5.896 19 Si 0.900 3.100 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.231 3.769 24 H 0.095 0.905 25 C -0.129 4.129 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.032 0.968 35 H 0.011 0.989 36 H 0.262 0.738 37 H 0.093 0.907 38 H 0.055 0.945 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.377 8.014 -5.961 13.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.097 4.097 3 N -0.143 5.143 4 N -0.125 5.125 5 C -0.095 4.095 6 N -0.156 5.156 7 C -0.038 4.038 8 C -0.029 4.029 9 N -0.371 5.371 10 C 0.321 3.679 11 O -0.397 6.397 12 C 0.011 3.989 13 H 0.067 0.933 14 C -0.192 4.192 15 C -0.539 4.539 16 H 0.091 0.909 17 C -0.141 4.141 18 N -0.535 5.535 19 Si 0.728 3.272 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.210 1.210 23 C 0.125 3.875 24 H 0.113 0.887 25 C -0.186 4.186 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.146 0.854 33 H 0.117 0.883 34 H 0.051 0.949 35 H 0.030 0.970 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.494 9.476 -5.570 13.892 hybrid contribution -0.030 -1.914 0.281 1.935 sum -8.523 7.562 -5.290 12.563 Atomic orbital electron populations 1.20176 0.83800 1.04308 1.03965 1.24698 0.97050 0.83030 1.04908 1.74448 0.96180 1.23740 1.19932 1.73993 1.12063 1.07735 1.18659 1.25077 0.87245 0.92754 1.04403 1.45943 1.06821 1.08547 1.54287 1.22557 0.99924 0.76651 1.04702 1.22044 0.82904 1.00599 0.97357 1.48719 1.28251 1.12379 1.47794 1.22110 0.81008 0.89102 0.75699 1.90583 1.28865 1.75783 1.44445 1.18932 0.96806 0.85164 0.97975 0.93298 1.21808 0.94761 1.04537 0.98111 1.21118 0.98550 0.92552 1.41691 0.90872 1.24927 0.96136 0.97612 0.95394 1.69842 1.24185 1.10689 1.48766 0.86386 0.82453 0.79747 0.78643 1.19496 1.20960 1.20977 1.19695 0.87800 0.78506 1.01481 0.88698 1.22102 0.99423 1.00197 0.96925 0.89695 0.88816 0.90482 0.87780 0.88542 0.90451 0.85395 0.88334 0.94896 0.97038 0.92852 0.88839 0.92609 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.28 36.01 0.37 -0.14 16 2 C 0.17 2.29 8.06 -155.38 -1.25 1.04 16 3 N -0.30 -5.10 12.23 32.71 0.40 -4.70 16 4 N -0.29 -5.12 12.18 32.69 0.40 -4.73 16 5 C 0.17 2.82 7.15 -155.48 -1.11 1.71 16 6 N -0.46 -6.39 3.11 -110.96 -0.35 -6.73 16 7 C 0.09 0.92 6.88 -4.02 -0.03 0.89 16 8 C 0.10 1.20 5.71 -3.56 -0.02 1.18 16 9 N -0.63 -10.52 2.97 -166.05 -0.49 -11.01 16 10 C 0.53 11.05 6.73 -10.99 -0.07 10.97 16 11 O -0.52 -12.34 11.54 5.56 0.06 -12.27 16 12 C 0.03 0.73 1.77 -92.93 -0.16 0.56 16 13 H 0.05 1.10 6.91 -51.93 -0.36 0.74 16 14 C -0.13 -2.82 8.75 37.15 0.33 -2.50 16 15 C -0.50 -13.25 8.34 -34.44 -0.29 -13.53 16 16 H 0.07 2.06 6.93 -52.48 -0.36 1.70 16 17 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 18 N -0.90 -23.48 11.30 55.43 0.63 -22.85 16 19 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.23 3.70 3.83 -68.57 -0.26 3.44 16 24 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 25 C -0.13 -2.21 7.67 37.16 0.28 -1.93 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.44 7.68 -51.93 -0.40 0.04 16 29 H 0.10 0.73 7.76 -51.93 -0.40 0.33 16 30 H 0.10 1.05 7.50 -51.93 -0.39 0.66 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.13 1.66 4.76 -51.93 -0.25 1.41 16 33 H 0.10 2.31 5.98 -51.93 -0.31 2.00 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.01 0.18 5.97 -51.93 -0.31 -0.13 16 36 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 37 H 0.09 1.71 6.48 -51.93 -0.34 1.38 16 38 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 39 H 0.06 1.23 7.27 -51.93 -0.38 0.86 16 LS Contribution 309.02 15.07 4.66 4.66 Total: -1.00 -31.86 309.02 -7.19 -39.06 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.16 Total: -0.34 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -2.32 Total: 3.17 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.59 Total: -50.03 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.06 Total: -12.27 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.86 -7.19 -39.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463513792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.527 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds