Wall clock time and date at job start Tue Mar 31 2020 00:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30822 * 126.44044 * 2 1 4 4 N 1.28924 * 109.74200 * 180.16289 * 3 2 1 5 5 C 1.29729 * 109.42632 * 0.10463 * 4 3 2 6 6 N 1.34785 * 126.43847 * 180.02562 * 2 1 3 7 7 C 1.46224 * 128.60711 * 359.50279 * 6 2 1 8 8 C 1.53327 * 109.18197 * 161.67374 * 7 6 2 9 9 N 1.47075 * 109.25449 * 45.62830 * 8 7 6 10 10 C 1.34776 * 120.94861 * 116.43093 * 9 8 7 11 11 O 1.21277 * 120.00283 * 185.73728 * 10 9 8 12 12 C 1.50702 * 119.99697 * 5.73330 * 10 9 8 13 13 H 1.09000 * 109.47306 * 39.94299 * 12 10 9 14 14 C 1.52991 * 109.47372 * 279.93985 * 12 10 9 15 15 C 1.50700 * 109.46821 * 159.93992 * 12 10 9 16 16 H 1.08006 * 120.00297 * 0.02562 * 15 12 10 17 17 C 1.37881 * 119.99932 * 180.27431 * 15 12 10 18 18 N 1.31508 * 120.00113 * 359.72952 * 17 15 12 19 19 Si 1.86801 * 119.99652 * 179.72409 * 17 15 12 20 20 H 1.48492 * 109.47629 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.46808 * 120.00687 * 19 17 15 22 22 H 1.48501 * 109.47076 * 239.99807 * 19 17 15 23 23 C 1.47521 * 118.10391 * 296.70312 * 9 8 7 24 24 H 1.08996 * 109.96215 * 283.57158 * 23 9 8 25 25 C 1.52998 * 109.95722 * 162.28764 * 23 9 8 26 26 H 1.09003 * 109.46922 * 269.97166 * 1 2 3 27 27 H 1.08999 * 109.46977 * 29.96963 * 1 2 3 28 28 H 1.08997 * 109.47143 * 149.97274 * 1 2 3 29 29 H 1.09002 * 109.52150 * 41.75612 * 7 6 2 30 30 H 1.09006 * 109.56449 * 281.61478 * 7 6 2 31 31 H 1.09001 * 109.50784 * 285.69068 * 8 7 6 32 32 H 1.09001 * 109.54172 * 165.58742 * 8 7 6 33 33 H 1.08999 * 109.47261 * 184.38187 * 14 12 10 34 34 H 1.09004 * 109.47518 * 304.38150 * 14 12 10 35 35 H 1.08996 * 109.47517 * 64.38165 * 14 12 10 36 36 H 0.96999 * 119.99966 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.46941 * 68.40692 * 25 23 9 38 38 H 1.09001 * 109.47350 * 188.40451 * 25 23 9 39 39 H 1.09005 * 109.47301 * 308.40614 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2841 1.0524 0.0000 4 7 3.5190 0.6820 -0.0034 5 6 3.5807 -0.6138 -0.0080 6 7 2.3076 -1.0843 -0.0005 7 6 1.9303 -2.4970 0.0088 8 6 3.1253 -3.3407 -0.4509 9 7 4.3399 -2.8762 0.2363 10 6 5.0105 -3.6847 1.0807 11 8 5.9482 -3.2529 1.7173 12 6 4.5951 -5.1252 1.2340 13 1 4.3267 -5.5317 0.2589 14 6 3.3895 -5.2113 2.1719 15 6 5.7386 -5.9189 1.8116 16 1 6.6725 -5.4291 2.0448 17 6 5.5942 -7.2714 2.0376 18 7 4.4569 -7.8677 1.7541 19 14 7.0142 -8.2566 2.7463 20 1 8.1740 -7.3582 2.9764 21 1 6.5985 -8.8675 4.0345 22 1 7.3987 -9.3275 1.7921 23 6 4.7997 -1.4982 -0.0204 24 1 5.2854 -1.4434 -0.9946 25 6 5.7732 -1.0599 1.0755 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 1.0911 -2.6544 -0.6688 30 1 1.6434 -2.7916 1.0183 31 1 3.2532 -3.2340 -1.5281 32 1 2.9473 -4.3881 -0.2075 33 1 3.1374 -6.2576 2.3445 34 1 3.6330 -4.7348 3.1215 35 1 2.5389 -4.7029 1.7180 36 1 4.3555 -8.8192 1.9127 37 1 6.6972 -1.6318 0.9906 38 1 5.9918 0.0021 0.9638 39 1 5.3243 -1.2377 2.0527 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463513792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:43 Heat of formation + Delta-G solvation = 38.720433 kcal Electronic energy + Delta-G solvation = -22660.459578 eV Core-core repulsion = 19411.387120 eV Total energy + Delta-G solvation = -3249.072458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.40960 -41.19367 -37.88270 -36.24050 -35.60503 -33.86749 -32.74766 -31.83674 -29.78778 -28.38999 -27.26817 -26.13800 -24.76042 -24.02231 -22.06086 -21.75212 -19.62999 -18.56210 -18.31771 -17.87058 -17.12007 -17.07469 -16.63753 -16.34920 -15.37441 -15.29000 -15.00678 -14.75484 -14.31123 -14.06164 -13.82822 -13.66399 -13.40333 -13.27536 -13.14903 -13.01901 -12.93140 -12.75065 -12.59135 -12.50718 -12.35759 -12.24855 -12.01368 -11.48957 -11.15433 -11.03718 -10.53560 -10.22910 -9.92221 -9.83576 -8.16143 -6.24963 0.72295 1.32052 1.39561 1.43758 1.54997 1.69459 1.79688 1.89435 2.45098 3.00921 3.14539 3.31575 3.45747 3.72683 3.87566 4.00599 4.08411 4.11462 4.23195 4.41233 4.58318 4.59433 4.68328 4.71741 4.73407 4.87657 4.89578 4.94225 4.97920 5.02587 5.09933 5.22542 5.42517 5.47181 5.73187 5.82034 5.93678 6.16935 6.44675 6.81075 7.34433 7.44893 7.61364 8.89280 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031942 B = 0.004948 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.378258 B = 5657.411591 C = 6283.101185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.187 3.813 3 N -0.346 5.346 4 N -0.317 5.317 5 C 0.162 3.838 6 N -0.465 5.465 7 C 0.085 3.915 8 C 0.086 3.914 9 N -0.627 5.627 10 C 0.529 3.471 11 O -0.562 6.562 12 C 0.032 3.968 13 H 0.053 0.947 14 C -0.122 4.122 15 C -0.527 4.527 16 H 0.045 0.955 17 C 0.027 3.973 18 N -0.905 5.905 19 Si 0.948 3.052 20 H -0.282 1.282 21 H -0.278 1.278 22 H -0.274 1.274 23 C 0.234 3.766 24 H 0.113 0.887 25 C -0.116 4.116 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.155 0.845 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.076 0.924 34 H 0.013 0.987 35 H 0.055 0.945 36 H 0.265 0.735 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.871 7.639 -7.194 15.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 N -0.186 5.186 4 N -0.155 5.155 5 C -0.108 4.108 6 N -0.156 5.156 7 C -0.037 4.037 8 C -0.036 4.036 9 N -0.363 5.363 10 C 0.321 3.679 11 O -0.439 6.439 12 C 0.011 3.989 13 H 0.070 0.930 14 C -0.180 4.180 15 C -0.565 4.565 16 H 0.063 0.937 17 C -0.173 4.173 18 N -0.545 5.545 19 Si 0.775 3.225 20 H -0.207 1.207 21 H -0.204 1.204 22 H -0.199 1.199 23 C 0.128 3.872 24 H 0.131 0.869 25 C -0.174 4.174 26 H 0.117 0.883 27 H 0.121 0.879 28 H 0.128 0.872 29 H 0.173 0.827 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.145 0.855 33 H 0.095 0.905 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.039 9.099 -6.837 15.855 hybrid contribution 0.684 -1.771 0.640 2.004 sum -10.355 7.328 -6.197 14.118 Atomic orbital electron populations 1.20491 0.79830 1.06442 1.05450 1.25646 0.98874 0.81959 1.01608 1.74377 0.96238 1.25623 1.22409 1.73894 1.13240 1.08799 1.19616 1.24871 0.88165 0.92451 1.05340 1.46130 1.05892 1.09774 1.53771 1.22815 1.00222 0.74480 1.06192 1.22368 0.81832 1.00852 0.98555 1.48547 1.29003 1.12109 1.46624 1.21757 0.80936 0.89026 0.76212 1.90578 1.30651 1.76320 1.46361 1.18829 0.96085 0.85960 0.97993 0.92954 1.21621 0.95703 1.03384 0.97245 1.21260 0.98982 0.93486 1.42772 0.93716 1.25446 0.98017 0.98194 0.95653 1.69892 1.24783 1.10981 1.48794 0.85653 0.79923 0.78529 0.78437 1.20712 1.20352 1.19898 1.19659 0.87924 0.78060 1.01561 0.86924 1.21882 0.98941 1.00489 0.96103 0.88329 0.87868 0.87183 0.82727 0.88348 0.87856 0.85515 0.90499 0.96768 0.92602 0.92522 0.90448 0.91655 0.94549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.74 10.28 71.24 0.73 0.00 16 2 C 0.19 4.47 8.06 138.12 1.11 5.58 16 3 N -0.35 -11.27 12.23 -50.42 -0.62 -11.89 16 4 N -0.32 -11.20 12.18 -50.49 -0.61 -11.82 16 5 C 0.16 5.04 7.15 138.10 0.99 6.03 16 6 N -0.46 -11.35 3.11 -504.96 -1.57 -12.92 16 7 C 0.09 1.44 6.88 86.54 0.59 2.04 16 8 C 0.09 1.89 5.71 86.38 0.49 2.38 16 9 N -0.63 -20.07 2.97 -797.64 -2.37 -22.44 16 10 C 0.53 22.26 6.73 87.66 0.59 22.85 16 11 O -0.56 -27.56 11.54 -3.02 -0.03 -27.59 16 12 C 0.03 1.46 1.77 -12.29 -0.02 1.44 16 13 H 0.05 2.31 6.91 -2.39 -0.02 2.30 16 14 C -0.12 -5.01 8.75 71.98 0.63 -4.38 16 15 C -0.53 -28.44 8.34 25.60 0.21 -28.23 16 16 H 0.04 2.62 6.93 -2.91 -0.02 2.60 16 17 C 0.03 1.40 5.30 84.66 0.45 1.85 16 18 N -0.91 -46.97 11.30 21.45 0.24 -46.73 16 19 Si 0.95 42.82 29.54 68.60 2.03 44.84 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 23 C 0.23 7.34 3.83 44.02 0.17 7.51 16 24 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 25 C -0.12 -4.12 7.67 71.98 0.55 -3.57 16 26 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.11 0.58 7.68 -2.39 -0.02 0.56 16 29 H 0.16 1.13 7.76 -2.39 -0.02 1.11 16 30 H 0.10 1.70 7.50 -2.38 -0.02 1.68 16 31 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.13 2.87 4.76 -2.39 -0.01 2.86 16 33 H 0.08 3.54 5.98 -2.39 -0.01 3.52 16 34 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.06 1.74 5.97 -2.39 -0.01 1.73 16 36 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 37 H 0.08 2.98 6.48 -2.39 -0.02 2.96 16 38 H 0.06 2.13 8.12 -2.39 -0.02 2.11 16 39 H 0.04 1.46 7.27 -2.38 -0.02 1.44 16 Total: -1.00 -72.13 309.02 4.63 -67.50 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.07 Total: 7.56 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 6.50 Total: 13.49 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -4.93 Total: -105.80 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.03 Total: -27.59 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -72.13 4.63 -67.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463513792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.222 kcal (2) G-P(sol) polarization free energy of solvation -72.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds