Wall clock time and date at job start Tue Mar 31 2020 00:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47415 * 2 1 4 4 H 1.09001 * 109.46592 * 305.00255 * 3 2 1 5 5 C 1.50698 * 109.47251 * 185.00251 * 3 2 1 6 6 H 1.07994 * 120.00191 * 240.00162 * 5 3 2 7 7 C 1.37880 * 120.00074 * 59.99858 * 5 3 2 8 8 N 1.31516 * 119.99969 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00199 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47070 * 90.00218 * 9 7 5 11 11 H 1.48495 * 109.47331 * 209.99970 * 9 7 5 12 12 H 1.48497 * 109.47098 * 330.00496 * 9 7 5 13 13 N 1.46493 * 109.46983 * 65.00169 * 3 2 1 14 14 C 1.34780 * 120.00314 * 275.00291 * 13 3 2 15 15 O 1.21289 * 119.99719 * 359.97438 * 14 13 3 16 16 C 1.50691 * 120.00216 * 180.02562 * 14 13 3 17 17 C 1.50703 * 109.47381 * 179.97438 * 16 14 13 18 18 N 1.30834 * 125.96271 * 265.27538 * 17 16 14 19 19 C 1.33243 * 109.83049 * 180.19175 * 18 17 16 20 20 C 1.50701 * 125.52543 * 179.85490 * 19 18 17 21 21 C 1.53000 * 117.49727 * 119.71430 * 20 19 18 22 22 C 1.53002 * 60.02940 * 107.49982 * 21 20 19 23 23 N 1.30709 * 108.94361 * 359.58237 * 19 18 17 24 24 N 1.34429 * 125.96023 * 85.02245 * 17 16 14 25 25 H 0.96996 * 126.82852 * 359.92451 * 24 17 16 26 26 H 1.09005 * 109.46605 * 299.99762 * 1 2 3 27 27 H 1.08994 * 109.47307 * 59.99573 * 1 2 3 28 28 H 1.09003 * 109.47096 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47120 * 239.99724 * 2 1 3 30 30 H 1.09009 * 109.47698 * 120.00229 * 2 1 3 31 31 H 0.97000 * 120.00218 * 180.02562 * 8 7 5 32 32 H 0.97000 * 119.99916 * 94.99979 * 13 3 2 33 33 H 1.08999 * 109.47482 * 60.00240 * 16 14 13 34 34 H 1.09006 * 109.47464 * 299.99529 * 16 14 13 35 35 H 1.08999 * 115.54923 * 334.04629 * 20 19 18 36 36 H 1.09002 * 117.49833 * 215.00087 * 21 20 19 37 37 H 1.09002 * 117.49953 * 0.02562 * 21 20 19 38 38 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 39 39 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8887 0.6522 7 6 4.1432 0.8783 -1.2281 8 7 3.4061 0.3374 -2.1734 9 14 6.0048 0.8811 -1.3820 10 1 6.5548 -0.3503 -0.7605 11 1 6.3828 0.9222 -2.8175 12 1 6.5569 2.0736 -0.6904 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3671 15 8 -0.3393 2.6327 0.4342 16 6 0.0369 3.3386 2.6545 17 6 -1.3607 3.8870 2.5230 18 7 -1.6773 5.1095 2.1809 19 6 -3.0026 5.2467 2.1693 20 6 -3.7491 6.5105 1.8277 21 6 -4.7065 6.4649 0.6351 22 6 -5.2620 6.5226 2.0596 23 7 -3.5502 4.1060 2.4967 24 7 -2.4996 3.2041 2.7320 25 1 -2.5799 2.2733 2.9927 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8291 -0.0611 -2.9500 32 1 2.2720 2.1230 1.9977 33 1 0.7282 4.1541 2.8667 34 1 0.0682 2.6145 3.4687 35 1 -3.2055 7.4392 2.0015 36 1 -4.7929 7.3636 0.0244 37 1 -4.7968 5.5207 0.0980 38 1 -5.7140 7.4593 2.3860 39 1 -5.7172 5.6165 2.4593 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466685899.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:25 Heat of formation + Delta-G solvation = 62.870059 kcal Electronic energy + Delta-G solvation = -21328.820165 eV Core-core repulsion = 18080.794914 eV Total energy + Delta-G solvation = -3248.025251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 4.39 seconds Orbital eigenvalues (eV) -42.11275 -39.10353 -37.24205 -35.19233 -32.73801 -32.35473 -32.23547 -30.95369 -28.57770 -26.77288 -24.52339 -23.17777 -22.49747 -21.57575 -20.22285 -19.83489 -19.43195 -17.98880 -17.26906 -16.01281 -15.79452 -15.42381 -15.04854 -14.93466 -14.70113 -14.29803 -13.73134 -13.07845 -12.88694 -12.69722 -12.26254 -12.06806 -11.74416 -11.63050 -11.40551 -11.31366 -11.16967 -11.03394 -10.86305 -10.64287 -10.37864 -10.25154 -9.93583 -9.85164 -9.71659 -9.41731 -9.10927 -9.04881 -8.55332 -7.93062 -6.16473 -4.26283 1.61704 2.64942 2.79781 3.20736 3.22488 3.29428 3.31310 3.67139 3.92876 4.09318 4.34691 4.54663 4.60620 4.79906 4.90752 5.03764 5.15198 5.33179 5.49598 5.51064 5.53502 5.67402 5.98290 6.01377 6.30193 6.31406 6.34694 6.47190 6.56571 6.93315 7.07639 7.12155 7.27593 7.34827 7.55095 7.65986 7.83779 8.11896 8.18145 8.54510 8.71241 9.00728 9.41023 10.88865 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031729 B = 0.003499 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.263192 B = 7999.512632 C = 8111.092354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.703 5.703 14 C 0.504 3.496 15 O -0.538 6.538 16 C -0.074 4.074 17 C 0.322 3.678 18 N -0.529 5.529 19 C 0.257 3.743 20 C -0.070 4.070 21 C -0.159 4.159 22 C -0.162 4.162 23 N -0.317 5.317 24 N -0.473 5.473 25 H 0.439 0.561 26 H 0.034 0.966 27 H 0.049 0.951 28 H 0.023 0.977 29 H 0.100 0.900 30 H 0.032 0.968 31 H 0.265 0.735 32 H 0.390 0.610 33 H 0.128 0.872 34 H 0.113 0.887 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.256 6.843 11.222 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.351 5.351 14 C 0.287 3.713 15 O -0.416 6.416 16 C -0.117 4.117 17 C 0.042 3.958 18 N -0.258 5.258 19 C -0.025 4.025 20 C -0.090 4.090 21 C -0.197 4.197 22 C -0.200 4.200 23 N -0.147 5.147 24 N -0.190 5.190 25 H 0.285 0.715 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.118 0.882 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.223 0.777 33 H 0.146 0.854 34 H 0.131 0.869 35 H 0.148 0.852 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.313 6.898 10.293 16.778 hybrid contribution 1.532 -0.864 0.404 1.804 sum -9.781 6.035 10.697 15.701 Atomic orbital electron populations 1.21828 0.98486 0.97993 1.01006 1.21947 0.92444 0.99845 1.02412 1.18813 0.94324 0.89082 0.80816 0.93233 1.21216 0.90588 1.39166 1.06400 0.91968 1.24892 0.98680 0.94780 0.95336 1.69889 1.35193 1.37490 1.09342 0.86443 0.84764 0.78448 0.77433 1.20562 1.21073 1.19795 1.46444 1.14161 1.55714 1.18812 1.19869 0.83452 0.79730 0.88275 1.90747 1.51434 1.59322 1.40095 1.20359 0.89305 1.02472 0.99553 1.23431 0.90498 0.87882 0.93943 1.70245 1.13820 1.17761 1.23924 1.23068 0.88516 0.93523 0.97391 1.20042 0.90946 0.92889 1.05169 1.23039 1.01624 1.04027 0.91048 1.23037 0.93711 1.03937 0.99338 1.77835 1.10339 1.00438 1.26040 1.47796 1.03866 1.13437 1.53861 0.71522 0.94671 0.93169 0.95816 0.88200 0.94942 0.92513 0.77728 0.85361 0.86935 0.85176 0.87772 0.88428 0.87993 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.52 37.15 0.32 -2.59 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.11 16 3 C 0.27 6.52 2.24 -69.09 -0.15 6.37 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.54 -13.63 8.73 -34.44 -0.30 -13.93 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.27 11.29 55.43 0.63 -23.64 16 9 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.70 -13.27 5.02 -54.94 -0.28 -13.55 16 14 C 0.50 9.11 6.39 -10.99 -0.07 9.04 16 15 O -0.54 -12.09 13.17 5.55 0.07 -12.01 16 16 C -0.07 -0.94 6.33 -29.04 -0.18 -1.13 16 17 C 0.32 4.90 6.73 -155.69 -1.05 3.85 16 18 N -0.53 -9.02 11.19 -8.16 -0.09 -9.11 16 19 C 0.26 4.04 7.69 -156.85 -1.21 2.84 16 20 C -0.07 -0.84 6.33 -91.74 -0.58 -1.42 16 21 C -0.16 -1.68 10.23 -26.73 -0.27 -1.95 16 22 C -0.16 -1.56 10.14 -26.69 -0.27 -1.83 16 23 N -0.32 -4.94 12.34 32.42 0.40 -4.54 16 24 N -0.47 -6.69 7.45 32.62 0.24 -6.45 16 25 H 0.44 4.84 8.96 -182.34 -1.63 3.21 16 26 H 0.03 0.70 5.65 -51.93 -0.29 0.41 16 27 H 0.05 1.17 7.85 -51.93 -0.41 0.77 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.10 2.61 5.95 -51.92 -0.31 2.30 16 30 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.39 6.12 8.54 -40.82 -0.35 5.78 16 33 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 1.08 7.88 -51.93 -0.41 0.67 16 LS Contribution 328.97 15.07 4.96 4.96 Total: -1.00 -32.82 328.97 -9.82 -42.64 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -6.72 Total: 8.77 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -4.01 Total: -2.22 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 0.90 Total: -57.28 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.07 Total: -12.01 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.82 -9.82 -42.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466685899.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.506 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.39 seconds