Wall clock time and date at job start Tue Mar 31 2020 00:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47415 * 2 1 4 4 H 1.09001 * 109.46592 * 305.00255 * 3 2 1 5 5 C 1.50698 * 109.47251 * 185.00251 * 3 2 1 6 6 H 1.07994 * 120.00191 * 240.00162 * 5 3 2 7 7 C 1.37880 * 120.00074 * 59.99858 * 5 3 2 8 8 N 1.31516 * 119.99969 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00199 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47070 * 90.00218 * 9 7 5 11 11 H 1.48495 * 109.47331 * 209.99970 * 9 7 5 12 12 H 1.48497 * 109.47098 * 330.00496 * 9 7 5 13 13 N 1.46493 * 109.46983 * 65.00169 * 3 2 1 14 14 C 1.34780 * 120.00314 * 275.00291 * 13 3 2 15 15 O 1.21289 * 119.99719 * 359.97438 * 14 13 3 16 16 C 1.50691 * 120.00216 * 180.02562 * 14 13 3 17 17 C 1.50703 * 109.47381 * 179.97438 * 16 14 13 18 18 N 1.30834 * 125.96271 * 265.27538 * 17 16 14 19 19 C 1.33243 * 109.83049 * 180.19175 * 18 17 16 20 20 C 1.50701 * 125.52543 * 179.85490 * 19 18 17 21 21 C 1.53000 * 117.49727 * 119.71430 * 20 19 18 22 22 C 1.53002 * 60.02940 * 107.49982 * 21 20 19 23 23 N 1.30709 * 108.94361 * 359.58237 * 19 18 17 24 24 N 1.34429 * 125.96023 * 85.02245 * 17 16 14 25 25 H 0.96996 * 126.82852 * 359.92451 * 24 17 16 26 26 H 1.09005 * 109.46605 * 299.99762 * 1 2 3 27 27 H 1.08994 * 109.47307 * 59.99573 * 1 2 3 28 28 H 1.09003 * 109.47096 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47120 * 239.99724 * 2 1 3 30 30 H 1.09009 * 109.47698 * 120.00229 * 2 1 3 31 31 H 0.97000 * 120.00218 * 180.02562 * 8 7 5 32 32 H 0.97000 * 119.99916 * 94.99979 * 13 3 2 33 33 H 1.08999 * 109.47482 * 60.00240 * 16 14 13 34 34 H 1.09006 * 109.47464 * 299.99529 * 16 14 13 35 35 H 1.08999 * 115.54923 * 334.04629 * 20 19 18 36 36 H 1.09002 * 117.49833 * 215.00087 * 21 20 19 37 37 H 1.09002 * 117.49953 * 0.02562 * 21 20 19 38 38 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 39 39 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8887 0.6522 7 6 4.1432 0.8783 -1.2281 8 7 3.4061 0.3374 -2.1734 9 14 6.0048 0.8811 -1.3820 10 1 6.5548 -0.3503 -0.7605 11 1 6.3828 0.9222 -2.8175 12 1 6.5569 2.0736 -0.6904 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3671 15 8 -0.3393 2.6327 0.4342 16 6 0.0369 3.3386 2.6545 17 6 -1.3607 3.8870 2.5230 18 7 -1.6773 5.1095 2.1809 19 6 -3.0026 5.2467 2.1693 20 6 -3.7491 6.5105 1.8277 21 6 -4.7065 6.4649 0.6351 22 6 -5.2620 6.5226 2.0596 23 7 -3.5502 4.1060 2.4967 24 7 -2.4996 3.2041 2.7320 25 1 -2.5799 2.2733 2.9927 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8291 -0.0611 -2.9500 32 1 2.2720 2.1230 1.9977 33 1 0.7282 4.1541 2.8667 34 1 0.0682 2.6145 3.4687 35 1 -3.2055 7.4392 2.0015 36 1 -4.7929 7.3636 0.0244 37 1 -4.7968 5.5207 0.0980 38 1 -5.7140 7.4593 2.3860 39 1 -5.7172 5.6165 2.4593 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466685899.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:15 Heat of formation + Delta-G solvation = 40.300026 kcal Electronic energy + Delta-G solvation = -21329.798875 eV Core-core repulsion = 18080.794914 eV Total energy + Delta-G solvation = -3249.003961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 5.21 seconds Orbital eigenvalues (eV) -43.24629 -40.65149 -38.11800 -36.96938 -34.35003 -33.76653 -33.46499 -32.62869 -29.91360 -28.53655 -25.53305 -25.03667 -23.31737 -22.94005 -21.71287 -21.10806 -20.85651 -19.25879 -18.77213 -17.62705 -17.23908 -16.65814 -16.42683 -16.31672 -16.01066 -15.61613 -15.07734 -14.61789 -14.44037 -14.16077 -13.62843 -13.38141 -13.17444 -13.11498 -12.88121 -12.75728 -12.64054 -12.41615 -12.17753 -12.12521 -12.04277 -11.58987 -11.47502 -11.10347 -11.08415 -11.02171 -10.74119 -10.52094 -10.30172 -9.63923 -8.14980 -6.32022 0.47174 1.45930 1.47237 1.56680 1.59101 1.69252 1.80150 2.37704 2.60453 2.88560 3.02641 3.15213 3.52411 3.61142 3.91711 4.05389 4.08613 4.19723 4.48439 4.49690 4.54991 4.56761 4.75608 4.75683 4.88730 5.05663 5.09637 5.22491 5.24971 5.25425 5.37214 5.43334 5.57100 5.62992 5.80654 5.93734 6.08848 6.18469 6.77066 6.96562 7.04100 7.35365 7.58248 8.90193 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031729 B = 0.003499 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.263192 B = 7999.512632 C = 8111.092354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.007 1.007 5 C -0.546 4.546 6 H 0.076 0.924 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.263 1.263 13 N -0.697 5.697 14 C 0.503 3.497 15 O -0.587 6.587 16 C -0.058 4.058 17 C 0.313 3.687 18 N -0.561 5.561 19 C 0.244 3.756 20 C -0.093 4.093 21 C -0.160 4.160 22 C -0.140 4.140 23 N -0.334 5.334 24 N -0.468 5.468 25 H 0.451 0.549 26 H 0.048 0.952 27 H 0.017 0.983 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.263 0.737 32 H 0.409 0.591 33 H 0.153 0.847 34 H 0.164 0.836 35 H 0.143 0.857 36 H 0.128 0.872 37 H 0.074 0.926 38 H 0.133 0.867 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.821 7.455 13.491 18.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.011 0.989 5 C -0.584 4.584 6 H 0.094 0.906 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.187 1.187 13 N -0.347 5.347 14 C 0.288 3.712 15 O -0.468 6.468 16 C -0.100 4.100 17 C 0.034 3.966 18 N -0.290 5.290 19 C -0.038 4.038 20 C -0.114 4.114 21 C -0.198 4.198 22 C -0.178 4.178 23 N -0.164 5.164 24 N -0.186 5.186 25 H 0.299 0.701 26 H 0.067 0.933 27 H 0.037 0.963 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.245 0.755 33 H 0.170 0.830 34 H 0.182 0.818 35 H 0.161 0.839 36 H 0.146 0.854 37 H 0.093 0.907 38 H 0.151 0.849 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.872 7.505 12.622 18.271 hybrid contribution 1.342 -1.042 -0.321 1.729 sum -9.530 6.463 12.301 16.850 Atomic orbital electron populations 1.21665 0.97132 0.99001 1.00104 1.21780 0.93550 0.99143 1.01487 1.18335 0.93567 0.89125 0.81376 0.98864 1.21610 0.91464 1.38642 1.06664 0.90607 1.25771 1.03184 0.94538 0.95120 1.70057 1.37026 1.38523 1.09914 0.85392 0.79324 0.78932 0.76980 1.19649 1.21699 1.18743 1.46131 1.15191 1.55638 1.17732 1.20680 0.82272 0.78681 0.89536 1.90743 1.52700 1.60884 1.42433 1.20398 0.88248 1.03878 0.97472 1.23815 0.91470 0.87767 0.93575 1.70238 1.14737 1.19084 1.24943 1.23740 0.88506 0.94602 0.96955 1.20311 0.92205 0.92053 1.06822 1.23089 1.01217 1.03986 0.91519 1.23107 0.91692 1.04940 0.98027 1.77775 1.11150 1.00792 1.26656 1.47777 1.03461 1.13936 1.53400 0.70086 0.93266 0.96333 0.93707 0.91374 0.93419 0.92746 0.75469 0.82959 0.81812 0.83944 0.85385 0.90691 0.84874 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.52 71.98 0.61 -4.61 16 2 C -0.12 -5.66 5.45 30.59 0.17 -5.49 16 3 C 0.28 13.63 2.24 44.25 0.10 13.73 16 4 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 5 C -0.55 -27.66 8.73 25.60 0.22 -27.43 16 6 H 0.08 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.01 0.73 5.29 84.66 0.45 1.17 16 8 N -0.92 -51.85 11.29 21.45 0.24 -51.60 16 9 Si 0.97 41.17 29.54 68.60 2.03 43.19 16 10 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 13 N -0.70 -25.47 5.02 -446.11 -2.24 -27.71 16 14 C 0.50 17.58 6.39 87.65 0.56 18.14 16 15 O -0.59 -26.71 13.17 -3.06 -0.04 -26.75 16 16 C -0.06 -1.31 6.33 29.10 0.18 -1.13 16 17 C 0.31 9.07 6.73 138.23 0.93 10.00 16 18 N -0.56 -18.76 11.19 -179.72 -2.01 -20.77 16 19 C 0.24 7.59 7.69 138.63 1.07 8.65 16 20 C -0.09 -2.18 6.33 -11.52 -0.07 -2.25 16 21 C -0.16 -3.24 10.23 30.60 0.31 -2.92 16 22 C -0.14 -2.46 10.14 30.62 0.31 -2.15 16 23 N -0.33 -10.28 12.34 -51.33 -0.63 -10.92 16 24 N -0.47 -12.70 7.45 -50.70 -0.38 -13.08 16 25 H 0.45 9.28 8.96 -213.10 -1.91 7.37 16 26 H 0.05 1.94 5.65 -2.38 -0.01 1.92 16 27 H 0.02 0.87 7.85 -2.39 -0.02 0.85 16 28 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.07 3.67 5.95 -2.38 -0.01 3.65 16 30 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.41 11.78 8.54 -92.71 -0.79 10.98 16 33 H 0.15 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.16 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.14 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.09 1.83 7.88 -2.39 -0.02 1.81 16 Total: -1.00 -74.60 328.97 0.19 -74.41 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -1.61 Total: 27.52 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 4.84 Total: 5.72 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -5.02 Total: -124.08 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.04 Total: -26.75 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Total: -74.60 0.19 -74.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466685899.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.707 kcal (2) G-P(sol) polarization free energy of solvation -74.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.21 seconds