Wall clock time and date at job start Tue Mar 31 2020 00:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 H 1.09002 * 109.47195 * 55.00471 * 3 2 1 5 5 C 1.50704 * 109.47158 * 174.99819 * 3 2 1 6 6 H 1.07997 * 119.99816 * 119.99924 * 5 3 2 7 7 C 1.37884 * 120.00007 * 300.00147 * 5 3 2 8 8 N 1.31510 * 119.99647 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99795 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.46946 * 90.00350 * 9 7 5 11 11 H 1.48501 * 109.46974 * 209.99725 * 9 7 5 12 12 H 1.48500 * 109.47107 * 330.00232 * 9 7 5 13 13 N 1.46490 * 109.47329 * 294.99680 * 3 2 1 14 14 C 1.34786 * 119.99775 * 84.99917 * 13 3 2 15 15 O 1.21271 * 119.99866 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99720 * 180.02562 * 14 13 3 17 17 C 1.50700 * 109.47186 * 180.02562 * 16 14 13 18 18 N 1.30834 * 125.96114 * 265.30785 * 17 16 14 19 19 C 1.33243 * 109.83049 * 180.12133 * 18 17 16 20 20 C 1.50701 * 125.52543 * 179.85490 * 19 18 17 21 21 C 1.53000 * 117.49727 * 119.71430 * 20 19 18 22 22 C 1.53002 * 60.02940 * 107.49982 * 21 20 19 23 23 N 1.30709 * 108.94361 * 359.58237 * 19 18 17 24 24 N 1.34429 * 125.96151 * 84.97222 * 17 16 14 25 25 H 0.96996 * 126.82852 * 359.97438 * 24 17 16 26 26 H 1.08998 * 109.47165 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47598 * 299.99963 * 1 2 3 28 28 H 1.09001 * 109.46886 * 60.00414 * 1 2 3 29 29 H 1.09002 * 109.47426 * 239.99404 * 2 1 3 30 30 H 1.09005 * 109.47177 * 119.99968 * 2 1 3 31 31 H 0.97011 * 119.99457 * 180.02562 * 8 7 5 32 32 H 0.97004 * 120.00386 * 265.00142 * 13 3 2 33 33 H 1.08997 * 109.47874 * 59.99809 * 16 14 13 34 34 H 1.09004 * 109.47329 * 300.00141 * 16 14 13 35 35 H 1.08999 * 115.54923 * 334.04629 * 20 19 18 36 36 H 1.09002 * 117.49833 * 215.00087 * 21 20 19 37 37 H 1.09002 * 117.49953 * 0.02562 * 21 20 19 38 38 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 39 39 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0962 0.1100 2.5708 10 1 2.8744 -1.3261 2.2647 11 1 3.7940 0.2359 3.8756 12 1 1.7880 0.8094 2.6395 13 7 1.6525 2.0974 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6326 -0.4342 16 6 0.0363 3.3376 -2.6548 17 6 -1.3611 3.8862 -2.5231 18 7 -2.4614 3.2827 -2.8931 19 6 -3.5125 4.0585 -2.6309 20 6 -4.9507 3.7107 -2.9171 21 6 -5.9129 3.6507 -1.7291 22 6 -5.9965 4.8114 -2.7226 23 7 -3.0944 5.1675 -2.0798 24 7 -1.6951 5.0783 -1.9993 25 1 -1.0901 5.7441 -1.6367 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 5.8770 0.4819 2.1131 32 1 2.2720 2.1231 -1.9977 33 1 0.0673 2.6130 -3.4685 34 1 0.7277 4.1529 -2.8679 35 1 -5.1102 3.0025 -3.7303 36 1 -6.7055 2.9032 -1.7606 37 1 -5.5058 3.8633 -0.7405 38 1 -6.8441 4.8274 -3.4076 39 1 -5.6440 5.7869 -2.3876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466685900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:31 Heat of formation + Delta-G solvation = 70.856084 kcal Electronic energy + Delta-G solvation = -21442.092992 eV Core-core repulsion = 18194.414040 eV Total energy + Delta-G solvation = -3247.678951 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.18735 -39.32744 -37.30667 -35.47433 -32.84550 -32.41398 -32.31128 -31.44310 -28.72522 -27.26321 -24.58739 -22.84715 -22.54890 -21.82495 -20.50408 -19.91105 -19.69732 -18.06881 -17.45496 -16.16586 -15.89593 -15.76069 -15.24960 -15.12729 -14.77130 -14.27941 -13.71987 -13.47321 -13.07499 -12.85412 -12.37974 -12.18019 -12.04297 -11.83519 -11.70728 -11.63271 -11.24072 -11.09827 -10.95038 -10.70023 -10.66116 -10.01140 -9.97519 -9.92710 -9.65419 -9.46531 -9.28531 -9.16024 -8.81364 -8.17881 -6.26657 -4.29677 1.54486 2.58084 2.72052 3.03531 3.20381 3.32315 3.37022 3.58157 3.85423 3.97119 4.26929 4.46833 4.53865 4.73708 4.84653 4.97136 5.07302 5.20213 5.36599 5.45576 5.46028 5.61450 5.92197 5.95076 5.95970 6.01209 6.15967 6.24320 6.40138 6.62337 6.67706 6.80169 6.93243 7.02024 7.17295 7.23853 7.43844 8.04271 8.10690 8.41828 8.67506 8.79963 9.33966 10.85219 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032499 B = 0.003841 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.364865 B = 7287.716728 C = 7681.149991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.244 3.756 4 H 0.049 0.951 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.261 1.261 13 N -0.695 5.695 14 C 0.506 3.494 15 O -0.539 6.539 16 C -0.073 4.073 17 C 0.320 3.680 18 N -0.529 5.529 19 C 0.257 3.743 20 C -0.070 4.070 21 C -0.159 4.159 22 C -0.162 4.162 23 N -0.316 5.316 24 N -0.472 5.472 25 H 0.440 0.560 26 H 0.032 0.968 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.268 0.732 32 H 0.397 0.603 33 H 0.130 0.870 34 H 0.116 0.884 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.384 6.156 -9.896 19.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.140 3.860 4 H 0.067 0.933 5 C -0.575 4.575 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.344 5.344 14 C 0.289 3.711 15 O -0.417 6.417 16 C -0.115 4.115 17 C 0.041 3.959 18 N -0.257 5.257 19 C -0.025 4.025 20 C -0.091 4.091 21 C -0.198 4.198 22 C -0.200 4.200 23 N -0.145 5.145 24 N -0.189 5.189 25 H 0.286 0.714 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.231 0.769 33 H 0.148 0.852 34 H 0.134 0.866 35 H 0.148 0.852 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.269 6.304 -9.037 19.649 hybrid contribution 0.680 -0.185 0.670 0.972 sum -15.589 6.119 -8.368 18.721 Atomic orbital electron populations 1.21866 0.96794 0.99167 1.02263 1.22289 0.94407 0.99833 1.01194 1.19173 0.95654 0.88578 0.82545 0.93339 1.21031 0.88504 1.40033 1.07909 0.90103 1.24827 0.94857 0.95085 0.97670 1.69864 1.08687 1.44349 1.29861 0.86913 0.80904 0.80062 0.80916 1.20147 1.22142 1.18541 1.46111 1.14386 1.55648 1.18238 1.19930 0.82958 0.79908 0.88301 1.90742 1.51149 1.59585 1.40266 1.20321 0.88239 1.02675 1.00312 1.23407 0.96114 0.83966 0.92461 1.70239 0.96353 1.31454 1.27699 1.23068 0.95256 0.88268 0.95899 1.20044 0.82699 1.03835 1.02493 1.23037 1.00760 1.01202 0.94759 1.23041 0.99650 0.94715 1.02583 1.77849 0.87912 1.23257 1.25526 1.47810 1.06129 1.16872 1.48077 0.71400 0.94913 0.93085 0.92773 0.92155 0.92784 0.92218 0.76925 0.85215 0.86559 0.85170 0.87778 0.88461 0.87958 0.87894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.51 37.16 0.32 -2.59 16 2 C -0.14 -3.01 5.11 -26.73 -0.14 -3.14 16 3 C 0.24 5.50 1.83 -69.09 -0.13 5.37 16 4 H 0.05 1.23 6.63 -51.93 -0.34 0.88 16 5 C -0.54 -13.90 9.31 -34.44 -0.32 -14.22 16 6 H 0.08 2.18 7.98 -52.49 -0.42 1.76 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -25.81 13.96 55.43 0.77 -25.04 16 9 Si 0.88 21.42 24.41 -169.99 -4.15 17.27 16 10 H -0.27 -6.49 6.83 56.52 0.39 -6.10 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 12 H -0.26 -6.31 6.53 56.52 0.37 -5.94 16 13 N -0.70 -12.38 5.02 -54.94 -0.28 -12.65 16 14 C 0.51 8.50 6.39 -10.98 -0.07 8.43 16 15 O -0.54 -11.26 13.17 5.56 0.07 -11.19 16 16 C -0.07 -0.86 6.33 -29.04 -0.18 -1.04 16 17 C 0.32 4.58 6.73 -155.69 -1.05 3.53 16 18 N -0.53 -8.49 11.19 -8.16 -0.09 -8.58 16 19 C 0.26 3.84 7.69 -156.85 -1.21 2.64 16 20 C -0.07 -0.80 6.33 -91.74 -0.58 -1.38 16 21 C -0.16 -1.58 10.23 -26.73 -0.27 -1.85 16 22 C -0.16 -1.47 10.14 -26.69 -0.27 -1.74 16 23 N -0.32 -4.72 12.34 32.42 0.40 -4.32 16 24 N -0.47 -6.37 7.45 32.62 0.24 -6.12 16 25 H 0.44 4.61 8.96 -182.34 -1.63 2.97 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 1.10 7.85 -51.93 -0.41 0.70 16 28 H 0.05 1.08 5.65 -51.93 -0.29 0.79 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.05 1.24 3.22 -51.93 -0.17 1.08 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.40 5.96 8.54 -40.82 -0.35 5.62 16 33 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.13 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 1.03 7.88 -51.93 -0.41 0.62 16 LS Contribution 322.21 15.07 4.86 4.86 Total: -1.00 -33.76 322.21 -8.76 -42.52 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.59 Total: 7.17 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -4.00 Total: -3.91 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 1.05 Total: -56.72 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.07 Total: -11.19 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.15 Total: 17.27 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.76 -8.76 -42.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466685900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.376 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds