Wall clock time and date at job start Tue Mar 31 2020 00:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 H 1.09002 * 109.47195 * 55.00471 * 3 2 1 5 5 C 1.50704 * 109.47158 * 174.99819 * 3 2 1 6 6 H 1.07997 * 119.99816 * 119.99924 * 5 3 2 7 7 C 1.37884 * 120.00007 * 300.00147 * 5 3 2 8 8 N 1.31510 * 119.99647 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99795 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.46946 * 90.00350 * 9 7 5 11 11 H 1.48501 * 109.46974 * 209.99725 * 9 7 5 12 12 H 1.48500 * 109.47107 * 330.00232 * 9 7 5 13 13 N 1.46490 * 109.47329 * 294.99680 * 3 2 1 14 14 C 1.34786 * 119.99775 * 84.99917 * 13 3 2 15 15 O 1.21271 * 119.99866 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99720 * 180.02562 * 14 13 3 17 17 C 1.50700 * 109.47186 * 180.02562 * 16 14 13 18 18 N 1.30834 * 125.96114 * 265.30785 * 17 16 14 19 19 C 1.33243 * 109.83049 * 180.12133 * 18 17 16 20 20 C 1.50701 * 125.52543 * 179.85490 * 19 18 17 21 21 C 1.53000 * 117.49727 * 119.71430 * 20 19 18 22 22 C 1.53002 * 60.02940 * 107.49982 * 21 20 19 23 23 N 1.30709 * 108.94361 * 359.58237 * 19 18 17 24 24 N 1.34429 * 125.96151 * 84.97222 * 17 16 14 25 25 H 0.96996 * 126.82852 * 359.97438 * 24 17 16 26 26 H 1.08998 * 109.47165 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47598 * 299.99963 * 1 2 3 28 28 H 1.09001 * 109.46886 * 60.00414 * 1 2 3 29 29 H 1.09002 * 109.47426 * 239.99404 * 2 1 3 30 30 H 1.09005 * 109.47177 * 119.99968 * 2 1 3 31 31 H 0.97011 * 119.99457 * 180.02562 * 8 7 5 32 32 H 0.97004 * 120.00386 * 265.00142 * 13 3 2 33 33 H 1.08997 * 109.47874 * 59.99809 * 16 14 13 34 34 H 1.09004 * 109.47329 * 300.00141 * 16 14 13 35 35 H 1.08999 * 115.54923 * 334.04629 * 20 19 18 36 36 H 1.09002 * 117.49833 * 215.00087 * 21 20 19 37 37 H 1.09002 * 117.49953 * 0.02562 * 21 20 19 38 38 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 39 39 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0962 0.1100 2.5708 10 1 2.8744 -1.3261 2.2647 11 1 3.7940 0.2359 3.8756 12 1 1.7880 0.8094 2.6395 13 7 1.6525 2.0974 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6326 -0.4342 16 6 0.0363 3.3376 -2.6548 17 6 -1.3611 3.8862 -2.5231 18 7 -2.4614 3.2827 -2.8931 19 6 -3.5125 4.0585 -2.6309 20 6 -4.9507 3.7107 -2.9171 21 6 -5.9129 3.6507 -1.7291 22 6 -5.9965 4.8114 -2.7226 23 7 -3.0944 5.1675 -2.0798 24 7 -1.6951 5.0783 -1.9993 25 1 -1.0901 5.7441 -1.6367 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 5.8770 0.4819 2.1131 32 1 2.2720 2.1231 -1.9977 33 1 0.0673 2.6130 -3.4685 34 1 0.7277 4.1529 -2.8679 35 1 -5.1102 3.0025 -3.7303 36 1 -6.7055 2.9032 -1.7606 37 1 -5.5058 3.8633 -0.7405 38 1 -6.8441 4.8274 -3.4076 39 1 -5.6440 5.7869 -2.3876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466685900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:29 Heat of formation + Delta-G solvation = 46.402303 kcal Electronic energy + Delta-G solvation = -21443.153387 eV Core-core repulsion = 18194.414040 eV Total energy + Delta-G solvation = -3248.739347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.25197 -40.77875 -38.12411 -37.15738 -34.42766 -33.93442 -33.46633 -32.92903 -30.05211 -28.91914 -25.52928 -24.67305 -23.36118 -23.13532 -21.88084 -21.22508 -20.86141 -19.36496 -18.90177 -17.77079 -17.53143 -16.79547 -16.48263 -16.36704 -15.95107 -15.67170 -15.15436 -14.93312 -14.56782 -14.29986 -13.88326 -13.69656 -13.40828 -13.10271 -13.03293 -12.78431 -12.74486 -12.43110 -12.39025 -12.12359 -11.86960 -11.47387 -11.40202 -11.23438 -11.10460 -11.06994 -10.86906 -10.75744 -10.32112 -9.78638 -8.38233 -6.42720 0.46924 1.26160 1.34692 1.43306 1.57603 1.68427 1.72312 2.25120 2.46365 2.84324 2.98188 3.02257 3.51616 3.60835 3.91500 3.96947 4.08445 4.18462 4.23888 4.32127 4.45507 4.51745 4.54932 4.75862 4.84525 4.89004 5.00514 5.09874 5.11738 5.22066 5.22633 5.24980 5.37207 5.41138 5.51282 5.65402 6.07088 6.14639 6.60519 6.85943 7.03411 7.20180 7.45313 8.76682 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032499 B = 0.003841 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.364865 B = 7287.716728 C = 7681.149991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.137 4.137 3 C 0.252 3.748 4 H 0.020 0.980 5 C -0.529 4.529 6 H 0.064 0.936 7 C 0.032 3.968 8 N -0.932 5.932 9 Si 0.931 3.069 10 H -0.262 1.262 11 H -0.295 1.295 12 H -0.264 1.264 13 N -0.693 5.693 14 C 0.508 3.492 15 O -0.581 6.581 16 C -0.059 4.059 17 C 0.312 3.688 18 N -0.556 5.556 19 C 0.244 3.756 20 C -0.092 4.092 21 C -0.158 4.158 22 C -0.143 4.143 23 N -0.335 5.335 24 N -0.469 5.469 25 H 0.451 0.549 26 H 0.055 0.945 27 H 0.030 0.970 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.269 0.731 32 H 0.412 0.588 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.144 0.856 36 H 0.128 0.872 37 H 0.075 0.925 38 H 0.132 0.868 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.899 5.995 -11.313 21.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.176 4.176 3 C 0.146 3.854 4 H 0.038 0.962 5 C -0.567 4.567 6 H 0.082 0.918 7 C -0.168 4.168 8 N -0.571 5.571 9 Si 0.760 3.240 10 H -0.187 1.187 11 H -0.223 1.223 12 H -0.189 1.189 13 N -0.342 5.342 14 C 0.294 3.706 15 O -0.462 6.462 16 C -0.100 4.100 17 C 0.033 3.967 18 N -0.285 5.285 19 C -0.037 4.037 20 C -0.112 4.112 21 C -0.196 4.196 22 C -0.181 4.181 23 N -0.165 5.165 24 N -0.187 5.187 25 H 0.299 0.701 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.249 0.751 33 H 0.175 0.825 34 H 0.179 0.821 35 H 0.161 0.839 36 H 0.146 0.854 37 H 0.094 0.906 38 H 0.150 0.850 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.779 6.162 -10.486 21.541 hybrid contribution 1.148 -0.060 1.073 1.573 sum -16.631 6.102 -9.413 20.060 Atomic orbital electron populations 1.21733 0.95514 1.00325 1.01334 1.22219 0.95431 0.98796 1.01134 1.18748 0.93194 0.89472 0.83943 0.96169 1.21294 0.90247 1.38282 1.06873 0.91827 1.25480 0.95573 0.95994 0.99750 1.69964 1.10135 1.46211 1.30839 0.86117 0.79247 0.80005 0.78681 1.18743 1.22284 1.18902 1.45868 1.15459 1.55738 1.17160 1.20645 0.81700 0.78843 0.89460 1.90736 1.52183 1.60938 1.42342 1.20379 0.87662 1.04328 0.97673 1.23802 0.96736 0.84061 0.92096 1.70237 0.97151 1.32330 1.28814 1.23731 0.96552 0.88023 0.95407 1.20308 0.81513 1.05718 1.03709 1.23085 1.00721 1.02444 0.93395 1.23106 0.99312 0.93467 1.02181 1.77796 0.88700 1.23830 1.26188 1.47813 1.05965 1.17161 1.47800 0.70120 0.92637 0.95102 0.92599 0.90865 0.94108 0.92138 0.75120 0.82505 0.82131 0.83870 0.85359 0.90630 0.84973 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 8.51 71.98 0.61 -4.50 16 2 C -0.14 -5.75 5.11 30.59 0.16 -5.59 16 3 C 0.25 11.17 1.83 44.25 0.08 11.25 16 4 H 0.02 1.03 6.63 -2.39 -0.02 1.02 16 5 C -0.53 -27.34 9.31 25.60 0.24 -27.10 16 6 H 0.06 3.44 7.98 -2.91 -0.02 3.42 16 7 C 0.03 1.75 5.45 84.66 0.46 2.21 16 8 N -0.93 -54.62 13.96 21.45 0.30 -54.32 16 9 Si 0.93 44.25 24.41 68.60 1.67 45.92 16 10 H -0.26 -11.77 6.83 99.48 0.68 -11.10 16 11 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 12 H -0.26 -12.58 6.53 99.48 0.65 -11.93 16 13 N -0.69 -23.48 5.02 -446.11 -2.24 -25.72 16 14 C 0.51 16.11 6.39 87.65 0.56 16.67 16 15 O -0.58 -23.84 13.17 -3.00 -0.04 -23.88 16 16 C -0.06 -1.20 6.33 29.10 0.18 -1.01 16 17 C 0.31 8.39 6.73 138.23 0.93 9.32 16 18 N -0.56 -17.15 11.19 -179.73 -2.01 -19.16 16 19 C 0.24 7.13 7.69 138.63 1.07 8.19 16 20 C -0.09 -1.98 6.33 -11.52 -0.07 -2.05 16 21 C -0.16 -2.92 10.23 30.60 0.31 -2.61 16 22 C -0.14 -2.34 10.14 30.62 0.31 -2.02 16 23 N -0.34 -9.84 12.34 -51.33 -0.63 -10.47 16 24 N -0.47 -12.12 7.45 -50.71 -0.38 -12.50 16 25 H 0.45 8.90 8.96 -213.10 -1.91 6.99 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.03 1.30 7.85 -2.39 -0.02 1.28 16 28 H 0.06 2.13 5.65 -2.39 -0.01 2.12 16 29 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.04 1.82 3.22 -2.38 -0.01 1.81 16 31 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 32 H 0.41 11.46 8.54 -92.71 -0.79 10.66 16 33 H 0.16 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.16 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.72 7.88 -2.39 -0.02 1.70 16 Total: -1.00 -74.07 322.21 -0.18 -74.24 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -1.69 Total: 23.13 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 4.84 Total: 2.76 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -4.96 Total: -122.18 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.04 Total: -23.88 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.67 Total: 45.92 kcal Total: -74.07 -0.18 -74.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466685900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.646 kcal (2) G-P(sol) polarization free energy of solvation -74.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds