Wall clock time and date at job start Tue Mar 31 2020 01:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46980 * 2 1 4 4 H 1.09000 * 109.47145 * 55.00233 * 3 2 1 5 5 C 1.53006 * 109.47102 * 175.00470 * 3 2 1 6 6 N 1.46504 * 109.46883 * 175.00371 * 5 3 2 7 7 C 1.34775 * 119.99531 * 179.97438 * 6 5 3 8 8 O 1.21475 * 120.00330 * 0.02562 * 7 6 5 9 9 C 1.48457 * 119.99946 * 179.97438 * 7 6 5 10 10 C 1.39532 * 120.55182 * 180.02562 * 9 7 6 11 11 C 1.38759 * 118.26677 * 180.02562 * 10 9 7 12 12 C 1.50698 * 120.42899 * 180.02562 * 11 10 9 13 13 N 1.32208 * 119.14604 * 0.02562 * 11 10 9 14 14 C 1.31887 * 121.03390 * 0.02562 * 13 11 10 15 15 N 1.31575 * 121.91631 * 359.71084 * 14 13 11 16 16 N 1.46498 * 109.47308 * 295.00087 * 3 2 1 17 17 C 1.36944 * 119.99673 * 85.00130 * 16 3 2 18 18 H 1.07995 * 119.99746 * 359.97438 * 17 16 3 19 19 C 1.38811 * 119.99915 * 179.97438 * 17 16 3 20 20 N 1.31618 * 120.00286 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99990 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47459 * 89.99815 * 21 19 17 23 23 H 1.48504 * 109.47189 * 209.99817 * 21 19 17 24 24 H 1.48507 * 109.46943 * 329.99485 * 21 19 17 25 25 H 1.09002 * 109.46804 * 299.99482 * 1 2 3 26 26 H 1.08992 * 109.47145 * 59.99984 * 1 2 3 27 27 H 1.09007 * 109.46993 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46804 * 240.00518 * 2 1 3 29 29 H 1.08997 * 109.47615 * 120.00548 * 2 1 3 30 30 H 1.09001 * 109.47002 * 294.99868 * 5 3 2 31 31 H 1.08993 * 109.46955 * 55.00306 * 5 3 2 32 32 H 0.96992 * 119.99966 * 359.97438 * 6 5 3 33 33 H 1.08004 * 120.86968 * 359.97438 * 10 9 7 34 34 H 1.09003 * 109.46694 * 90.00321 * 12 11 10 35 35 H 1.09004 * 109.47214 * 210.00127 * 12 11 10 36 36 H 1.08999 * 109.47198 * 330.00112 * 12 11 10 37 37 H 1.08001 * 119.03766 * 180.02562 * 14 13 11 38 38 H 0.96995 * 120.00562 * 265.00143 * 16 3 2 39 39 H 0.97002 * 120.00182 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0630 2.8169 0.0059 7 6 5.3856 3.0631 0.0867 8 8 6.1646 2.1470 0.2583 9 6 5.8905 4.4538 -0.0351 10 6 7.2574 4.7218 0.0463 11 6 7.6771 6.0390 -0.0734 12 6 9.1420 6.3836 0.0065 13 7 6.7753 6.9879 -0.2585 14 6 5.4902 6.6999 -0.3297 15 7 5.0472 5.4653 -0.2268 16 7 1.6524 2.0975 -1.2518 17 6 0.4155 2.6735 -1.3687 18 1 -0.2743 2.6445 -0.5382 19 6 0.0484 3.2946 -2.5545 20 7 -1.1405 3.8478 -2.6671 21 14 1.2414 3.3441 -3.9912 22 1 1.0378 2.1465 -4.8452 23 1 1.0000 4.5706 -4.7930 24 1 2.6347 3.3548 -3.4774 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8500 1.0377 1.0959 31 1 3.9953 0.8312 -0.6661 32 1 3.4410 3.5483 -0.1315 33 1 7.9702 3.9249 0.1993 34 1 9.5786 6.3476 -0.9916 35 1 9.2575 7.3864 0.4177 36 1 9.6494 5.6659 0.6512 37 1 4.7813 7.5004 -0.4820 38 1 2.2718 2.1232 -1.9978 39 1 -1.3969 4.2822 -3.4957 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481804603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:38 Heat of formation + Delta-G solvation = 17.301405 kcal Electronic energy + Delta-G solvation = -21372.722753 eV Core-core repulsion = 18122.721496 eV Total energy + Delta-G solvation = -3250.001256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.35763 -39.33285 -36.92671 -34.80123 -33.79939 -32.78552 -32.32396 -30.27952 -28.93087 -28.34758 -25.25578 -23.94010 -23.20402 -22.29162 -20.50737 -20.08860 -18.40435 -17.70423 -17.19395 -15.78179 -15.71447 -15.64418 -15.40990 -15.26350 -14.52114 -14.14575 -13.79831 -13.42895 -13.28680 -13.19989 -12.91692 -12.81685 -12.70004 -12.48427 -11.60498 -11.19005 -11.10650 -10.98672 -10.76787 -10.70802 -10.42671 -10.37783 -10.28629 -10.01389 -9.80242 -9.49379 -9.44064 -8.98733 -8.88188 -7.34947 -5.81176 -3.17258 0.37241 0.72439 2.73793 3.06395 3.34989 3.38827 3.43793 3.69310 3.76674 3.86414 4.35471 4.55558 4.69366 4.77685 5.08108 5.16502 5.18749 5.24567 5.31473 5.43955 5.48186 5.58798 5.72969 5.85228 5.87842 5.98425 6.11568 6.24670 6.41241 6.48860 6.55691 6.64034 6.73023 6.91635 7.28501 7.61035 7.85757 7.93835 8.21882 8.36831 9.14496 9.87156 10.05811 11.36450 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017153 B = 0.005087 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.995866 B = 5502.431585 C = 6617.036811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.168 3.832 4 H 0.064 0.936 5 C 0.108 3.892 6 N -0.688 5.688 7 C 0.563 3.437 8 O -0.538 6.538 9 C 0.138 3.862 10 C -0.173 4.173 11 C 0.172 3.828 12 C -0.106 4.106 13 N -0.511 5.511 14 C 0.301 3.699 15 N -0.493 5.493 16 N -0.746 5.746 17 C -0.242 4.242 18 H 0.095 0.905 19 C 0.010 3.990 20 N -0.930 5.930 21 Si 0.879 3.121 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.278 1.278 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.033 0.967 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.422 0.578 33 H 0.159 0.841 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.205 0.795 38 H 0.362 0.638 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.778 1.803 6.671 18.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.082 0.918 5 C -0.016 4.016 6 N -0.339 5.339 7 C 0.346 3.654 8 O -0.415 6.415 9 C -0.009 4.009 10 C -0.196 4.196 11 C 0.024 3.976 12 C -0.163 4.163 13 N -0.227 5.227 14 C 0.013 3.987 15 N -0.209 5.209 16 N -0.390 5.390 17 C -0.371 4.371 18 H 0.113 0.887 19 C -0.186 4.186 20 N -0.578 5.578 21 Si 0.710 3.290 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.204 1.204 25 H 0.062 0.938 26 H 0.107 0.893 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.261 0.739 33 H 0.176 0.824 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.221 0.779 38 H 0.195 0.805 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.374 1.922 6.693 17.794 hybrid contribution 0.903 -0.198 -1.191 1.508 sum 17.277 1.724 5.502 18.214 Atomic orbital electron populations 1.21782 0.95129 0.99736 1.03846 1.22035 0.97436 0.97680 1.00138 1.20553 0.89495 0.93166 0.90958 0.91802 1.21877 0.95993 0.81959 1.01804 1.45929 1.06782 1.11593 1.69617 1.17807 0.83268 0.86240 0.78109 1.90761 1.56356 1.44143 1.50263 1.21746 0.90839 0.94141 0.94217 1.22785 0.96944 0.98896 1.01004 1.21823 0.97151 0.88596 0.90041 1.20802 0.87944 1.03785 1.03778 1.68233 1.03325 1.37745 1.13388 1.25056 0.90436 0.92638 0.90585 1.68429 1.39746 1.00784 1.11975 1.42825 1.16881 1.67655 1.11627 1.19041 0.90464 1.27746 0.99883 0.88693 1.24626 0.96296 1.00217 0.97488 1.69687 1.19277 1.42064 1.26738 0.86640 0.81211 0.77273 0.83887 1.21244 1.21849 1.20428 0.93842 0.89304 0.94830 0.92615 0.93496 0.90942 0.91418 0.73886 0.82373 0.89454 0.89690 0.89855 0.77886 0.80533 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.18 37.16 0.34 -2.28 16 2 C -0.13 -2.15 5.61 -26.73 -0.15 -2.30 16 3 C 0.17 2.96 2.59 -67.93 -0.18 2.79 16 4 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 5 C 0.11 1.71 5.23 -4.04 -0.02 1.69 16 6 N -0.69 -11.45 5.38 -61.05 -0.33 -11.78 16 7 C 0.56 9.29 7.83 -12.05 -0.09 9.19 16 8 O -0.54 -9.65 16.43 5.39 0.09 -9.56 16 9 C 0.14 2.06 6.79 -82.63 -0.56 1.50 16 10 C -0.17 -2.12 9.40 -38.91 -0.37 -2.48 16 11 C 0.17 1.87 6.83 -82.24 -0.56 1.31 16 12 C -0.11 -0.72 10.22 36.00 0.37 -0.35 16 13 N -0.51 -6.26 10.36 -10.81 -0.11 -6.37 16 14 C 0.30 3.82 12.27 -92.26 -1.13 2.69 16 15 N -0.49 -7.36 9.70 -11.14 -0.11 -7.47 16 16 N -0.75 -16.15 4.31 -53.43 -0.23 -16.38 16 17 C -0.24 -6.25 8.24 -15.06 -0.12 -6.38 16 18 H 0.10 2.63 7.55 -52.49 -0.40 2.23 16 19 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 20 N -0.93 -28.05 13.97 55.49 0.78 -27.28 16 21 Si 0.88 21.66 27.74 -169.99 -4.71 16.94 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.09 1.90 5.99 -51.93 -0.31 1.59 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.42 7.47 7.52 -40.82 -0.31 7.16 16 33 H 0.16 1.68 7.74 -52.48 -0.41 1.28 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 37 H 0.20 1.97 8.06 -52.49 -0.42 1.54 16 38 H 0.36 8.02 5.66 -40.82 -0.23 7.79 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 330.46 15.07 4.98 4.98 Total: -1.00 -31.34 330.46 -7.69 -39.03 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -5.46 Total: 12.34 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -2.57 Total: 5.55 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: 0.00 Total: -69.29 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.34 -7.69 -39.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481804603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.334 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds