Wall clock time and date at job start Tue Mar 31 2020 01:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46980 * 2 1 4 4 H 1.09000 * 109.47145 * 55.00233 * 3 2 1 5 5 C 1.53006 * 109.47102 * 175.00470 * 3 2 1 6 6 N 1.46504 * 109.46883 * 175.00371 * 5 3 2 7 7 C 1.34775 * 119.99531 * 179.97438 * 6 5 3 8 8 O 1.21475 * 120.00330 * 0.02562 * 7 6 5 9 9 C 1.48457 * 119.99946 * 179.97438 * 7 6 5 10 10 C 1.39532 * 120.55182 * 180.02562 * 9 7 6 11 11 C 1.38759 * 118.26677 * 180.02562 * 10 9 7 12 12 C 1.50698 * 120.42899 * 180.02562 * 11 10 9 13 13 N 1.32208 * 119.14604 * 0.02562 * 11 10 9 14 14 C 1.31887 * 121.03390 * 0.02562 * 13 11 10 15 15 N 1.31575 * 121.91631 * 359.71084 * 14 13 11 16 16 N 1.46498 * 109.47308 * 295.00087 * 3 2 1 17 17 C 1.36944 * 119.99673 * 85.00130 * 16 3 2 18 18 H 1.07995 * 119.99746 * 359.97438 * 17 16 3 19 19 C 1.38811 * 119.99915 * 179.97438 * 17 16 3 20 20 N 1.31618 * 120.00286 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99990 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47459 * 89.99815 * 21 19 17 23 23 H 1.48504 * 109.47189 * 209.99817 * 21 19 17 24 24 H 1.48507 * 109.46943 * 329.99485 * 21 19 17 25 25 H 1.09002 * 109.46804 * 299.99482 * 1 2 3 26 26 H 1.08992 * 109.47145 * 59.99984 * 1 2 3 27 27 H 1.09007 * 109.46993 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46804 * 240.00518 * 2 1 3 29 29 H 1.08997 * 109.47615 * 120.00548 * 2 1 3 30 30 H 1.09001 * 109.47002 * 294.99868 * 5 3 2 31 31 H 1.08993 * 109.46955 * 55.00306 * 5 3 2 32 32 H 0.96992 * 119.99966 * 359.97438 * 6 5 3 33 33 H 1.08004 * 120.86968 * 359.97438 * 10 9 7 34 34 H 1.09003 * 109.46694 * 90.00321 * 12 11 10 35 35 H 1.09004 * 109.47214 * 210.00127 * 12 11 10 36 36 H 1.08999 * 109.47198 * 330.00112 * 12 11 10 37 37 H 1.08001 * 119.03766 * 180.02562 * 14 13 11 38 38 H 0.96995 * 120.00562 * 265.00143 * 16 3 2 39 39 H 0.97002 * 120.00182 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0630 2.8169 0.0059 7 6 5.3856 3.0631 0.0867 8 8 6.1646 2.1470 0.2583 9 6 5.8905 4.4538 -0.0351 10 6 7.2574 4.7218 0.0463 11 6 7.6771 6.0390 -0.0734 12 6 9.1420 6.3836 0.0065 13 7 6.7753 6.9879 -0.2585 14 6 5.4902 6.6999 -0.3297 15 7 5.0472 5.4653 -0.2268 16 7 1.6524 2.0975 -1.2518 17 6 0.4155 2.6735 -1.3687 18 1 -0.2743 2.6445 -0.5382 19 6 0.0484 3.2946 -2.5545 20 7 -1.1405 3.8478 -2.6671 21 14 1.2414 3.3441 -3.9912 22 1 1.0378 2.1465 -4.8452 23 1 1.0000 4.5706 -4.7930 24 1 2.6347 3.3548 -3.4774 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8500 1.0377 1.0959 31 1 3.9953 0.8312 -0.6661 32 1 3.4410 3.5483 -0.1315 33 1 7.9702 3.9249 0.1993 34 1 9.5786 6.3476 -0.9916 35 1 9.2575 7.3864 0.4177 36 1 9.6494 5.6659 0.6512 37 1 4.7813 7.5004 -0.4820 38 1 2.2718 2.1232 -1.9978 39 1 -1.3969 4.2822 -3.4957 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481804603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:38 Heat of formation + Delta-G solvation = -4.393646 kcal Electronic energy + Delta-G solvation = -21373.663521 eV Core-core repulsion = 18122.721496 eV Total energy + Delta-G solvation = -3250.942024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.34539 -40.58017 -38.45228 -35.81274 -35.20401 -34.15501 -33.69423 -32.08199 -29.94095 -29.53814 -26.46572 -25.12914 -24.69663 -23.67328 -21.83755 -21.47676 -19.85856 -19.15095 -18.39971 -17.19226 -16.92838 -16.63451 -16.56635 -16.46111 -15.97852 -15.63826 -15.18347 -14.72320 -14.63682 -14.43199 -14.17485 -14.16574 -13.82504 -13.21599 -13.12411 -12.93211 -12.89238 -12.34423 -12.14423 -12.04206 -11.93143 -11.67131 -11.63665 -11.58103 -11.40585 -10.95746 -10.72456 -10.44985 -10.18160 -9.29754 -7.95933 -5.27497 -0.66462 -0.17790 1.38201 1.38598 1.45091 1.56812 1.88826 2.50542 2.68603 2.82318 2.98184 3.34677 3.39539 3.58144 3.73163 3.84115 3.90326 4.29043 4.32828 4.43349 4.46615 4.54803 4.68010 4.72461 4.79638 4.80977 4.99341 5.05995 5.08808 5.19185 5.31867 5.33100 5.51557 5.72944 5.74620 5.86869 6.26672 6.33948 6.83637 6.96080 7.12680 7.87342 8.05075 9.25253 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017153 B = 0.005087 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.995866 B = 5502.431585 C = 6617.036811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.167 3.833 4 H 0.059 0.941 5 C 0.115 3.885 6 N -0.694 5.694 7 C 0.564 3.436 8 O -0.555 6.555 9 C 0.113 3.887 10 C -0.170 4.170 11 C 0.176 3.824 12 C -0.104 4.104 13 N -0.518 5.518 14 C 0.294 3.706 15 N -0.520 5.520 16 N -0.747 5.747 17 C -0.204 4.204 18 H 0.070 0.930 19 C -0.056 4.056 20 N -0.981 5.981 21 Si 0.940 3.060 22 H -0.287 1.287 23 H -0.303 1.303 24 H -0.261 1.261 25 H 0.041 0.959 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.417 0.583 33 H 0.174 0.826 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.226 0.774 38 H 0.362 0.638 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.634 1.241 7.306 20.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.166 4.166 3 C 0.059 3.941 4 H 0.077 0.923 5 C -0.009 4.009 6 N -0.344 5.344 7 C 0.348 3.652 8 O -0.434 6.434 9 C -0.033 4.033 10 C -0.192 4.192 11 C 0.028 3.972 12 C -0.160 4.160 13 N -0.233 5.233 14 C 0.006 3.994 15 N -0.237 5.237 16 N -0.390 5.390 17 C -0.335 4.335 18 H 0.088 0.912 19 C -0.248 4.248 20 N -0.633 5.633 21 Si 0.770 3.230 22 H -0.213 1.213 23 H -0.230 1.230 24 H -0.187 1.187 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.254 0.746 33 H 0.191 0.809 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.242 0.758 38 H 0.194 0.806 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.277 1.318 7.364 20.678 hybrid contribution 0.062 -0.045 -1.252 1.254 sum 19.339 1.273 6.113 20.322 Atomic orbital electron populations 1.21698 0.96390 1.00492 1.01587 1.21950 0.96117 0.96597 1.01980 1.20726 0.91001 0.93667 0.88728 0.92342 1.21832 0.94117 0.81910 1.03013 1.45978 1.06969 1.11580 1.69853 1.18038 0.82890 0.86936 0.77365 1.90737 1.56578 1.44917 1.51168 1.21658 0.92031 0.93399 0.96195 1.23004 0.96031 1.00000 1.00209 1.22513 0.98846 0.87844 0.88040 1.20967 0.85080 1.04802 1.05196 1.68351 1.03318 1.38098 1.13558 1.25523 0.91277 0.92475 0.90077 1.68384 1.40503 1.01557 1.13299 1.42823 1.15298 1.67714 1.13212 1.18967 0.91092 1.25094 0.98353 0.91183 1.25232 0.97793 1.01521 1.00218 1.69841 1.21537 1.44675 1.27228 0.85639 0.80085 0.76443 0.80845 1.21344 1.23011 1.18671 0.93950 0.93591 0.92638 0.92410 0.89918 0.88832 0.91264 0.74584 0.80896 0.87945 0.88975 0.87692 0.75835 0.80553 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 9.18 71.98 0.66 -4.30 16 2 C -0.13 -3.81 5.61 30.59 0.17 -3.63 16 3 C 0.17 5.63 2.59 44.99 0.12 5.75 16 4 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 5 C 0.11 3.41 5.23 86.38 0.45 3.86 16 6 N -0.69 -22.29 5.38 -465.37 -2.50 -24.79 16 7 C 0.56 17.94 7.83 86.97 0.68 18.62 16 8 O -0.56 -19.02 16.43 -3.64 -0.06 -19.08 16 9 C 0.11 3.26 6.79 41.99 0.29 3.54 16 10 C -0.17 -3.81 9.40 22.71 0.21 -3.60 16 11 C 0.18 3.42 6.83 42.63 0.29 3.71 16 12 C -0.10 -1.06 10.22 71.24 0.73 -0.33 16 13 N -0.52 -11.75 10.36 -188.12 -1.95 -13.69 16 14 C 0.29 7.16 12.27 180.92 2.22 9.38 16 15 N -0.52 -15.21 9.70 -189.15 -1.84 -17.05 16 16 N -0.75 -31.83 4.31 -322.94 -1.39 -33.23 16 17 C -0.20 -10.70 8.24 84.03 0.69 -10.00 16 18 H 0.07 4.00 7.55 -2.91 -0.02 3.98 16 19 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 20 N -0.98 -61.13 13.97 21.65 0.30 -60.83 16 21 Si 0.94 45.39 27.74 68.60 1.90 47.29 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 24 H -0.26 -11.72 6.52 99.48 0.65 -11.07 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.04 1.97 5.99 -2.39 -0.01 1.96 16 27 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.42 14.51 7.52 -92.71 -0.70 13.81 16 33 H 0.17 3.27 7.74 -2.91 -0.02 3.25 16 34 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.10 0.66 8.10 -2.39 -0.02 0.64 16 37 H 0.23 4.11 8.06 -2.91 -0.02 4.09 16 38 H 0.36 15.57 5.66 -92.71 -0.52 15.05 16 39 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -68.68 330.46 1.24 -67.44 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: -0.21 Total: 33.67 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 6.98 Total: 20.27 kcal Atomic # 7 Polarization: -142.21 SS G_CDS: -7.38 Total: -149.59 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.06 Total: -19.08 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.90 Total: 47.29 kcal Total: -68.68 1.24 -67.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481804603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.046 kcal (2) G-P(sol) polarization free energy of solvation -68.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds