Wall clock time and date at job start Tue Mar 31 2020 01:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21475 * 120.00084 * 0.02562 * 7 6 5 9 9 C 1.48459 * 119.99660 * 180.02562 * 7 6 5 10 10 C 1.39543 * 120.54882 * 180.02562 * 9 7 6 11 11 C 1.38756 * 118.26352 * 179.97438 * 10 9 7 12 12 C 1.50701 * 120.42819 * 180.02562 * 11 10 9 13 13 N 1.32214 * 119.14837 * 0.02562 * 11 10 9 14 14 C 1.31884 * 121.03395 * 359.97438 * 13 11 10 15 15 N 1.31578 * 121.91556 * 359.71488 * 14 13 11 16 16 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 17 17 C 1.36943 * 119.99752 * 274.72222 * 16 3 2 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 3 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 3 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47294 * 90.00155 * 21 19 17 23 23 H 1.48499 * 109.47218 * 210.00015 * 21 19 17 24 24 H 1.48496 * 109.47166 * 329.99846 * 21 19 17 25 25 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 26 26 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 27 27 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 29 29 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 30 30 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 31 31 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 32 32 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 33 33 H 1.07995 * 120.86542 * 359.97407 * 10 9 7 34 34 H 1.09000 * 109.46807 * 89.99878 * 12 11 10 35 35 H 1.08992 * 109.47158 * 210.00392 * 12 11 10 36 36 H 1.09006 * 109.46672 * 330.00904 * 12 11 10 37 37 H 1.07992 * 119.03863 * 180.02562 * 14 13 11 38 38 H 0.97001 * 120.00384 * 95.00578 * 16 3 2 39 39 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1647 2.1468 -0.2594 9 6 5.8907 4.4536 0.0349 10 6 7.2577 4.7217 -0.0476 11 6 7.6773 6.0389 0.0721 12 6 9.1420 6.3837 -0.0101 13 7 6.7756 6.9875 0.2593 14 6 5.4907 6.6994 0.3326 15 7 5.0468 5.4661 0.2186 16 7 1.6525 2.0974 1.2518 17 6 0.4178 2.6784 1.3668 18 1 -0.2719 2.6498 0.5362 19 6 0.0527 3.3040 2.5509 20 7 0.8936 3.3393 3.5630 21 14 -1.6317 4.0959 2.7081 22 1 -2.6015 3.0979 3.2266 23 1 -1.5534 5.2440 3.6467 24 1 -2.0795 4.5755 1.3759 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.9955 0.8311 0.6660 31 1 3.8500 1.0376 -1.0960 32 1 3.4412 3.5482 0.1314 33 1 7.9703 3.9248 -0.2006 34 1 9.4099 6.5864 -1.0471 35 1 9.3419 7.2671 0.5962 36 1 9.7337 5.5467 0.3609 37 1 4.7820 7.4997 0.4857 38 1 2.2720 2.1232 1.9978 39 1 0.6383 3.7761 4.3906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481804604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:42 Heat of formation + Delta-G solvation = 13.402385 kcal Electronic energy + Delta-G solvation = -21277.406280 eV Core-core repulsion = 18027.235950 eV Total energy + Delta-G solvation = -3250.170330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.25129 -39.19180 -36.73775 -34.69658 -33.67549 -32.69064 -32.33044 -29.76772 -28.82829 -28.08510 -25.15456 -23.87523 -23.39392 -22.31799 -20.37973 -19.92292 -18.18934 -17.46841 -17.03854 -15.64119 -15.57979 -15.53907 -15.33448 -15.09143 -14.45968 -14.00072 -13.75452 -13.33197 -13.22179 -13.17863 -12.98375 -12.66194 -12.60984 -12.17202 -11.47088 -11.00905 -10.96536 -10.89012 -10.76424 -10.60773 -10.45652 -10.22756 -10.19966 -10.01292 -9.70417 -9.53444 -9.33159 -8.94589 -8.72771 -7.02556 -5.79648 -3.09062 0.48083 0.82302 2.86160 3.19884 3.41211 3.47099 3.48455 3.80299 3.85640 3.97367 4.46084 4.55975 4.78931 4.88171 5.17360 5.25000 5.36648 5.40369 5.44156 5.54912 5.57589 5.66254 5.90211 5.93513 5.94924 6.10382 6.21189 6.40847 6.50517 6.55813 6.58519 6.73365 6.84299 7.00551 7.23946 7.67853 7.74807 7.97254 8.35695 8.37974 9.49275 10.03488 10.39191 11.42249 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.004736 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.511246 B = 5910.125496 C = 7246.728642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.055 0.945 5 C 0.111 3.889 6 N -0.683 5.683 7 C 0.563 3.437 8 O -0.541 6.541 9 C 0.141 3.859 10 C -0.174 4.174 11 C 0.170 3.830 12 C -0.105 4.105 13 N -0.513 5.513 14 C 0.301 3.699 15 N -0.490 5.490 16 N -0.721 5.721 17 C -0.238 4.238 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.929 5.929 21 Si 0.903 3.097 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.282 1.282 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.423 0.577 33 H 0.158 0.842 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.203 0.797 38 H 0.385 0.615 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.057 3.049 -8.508 15.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.053 3.947 4 H 0.073 0.927 5 C -0.013 4.013 6 N -0.334 5.334 7 C 0.345 3.655 8 O -0.419 6.419 9 C -0.007 4.007 10 C -0.197 4.197 11 C 0.023 3.977 12 C -0.163 4.163 13 N -0.228 5.228 14 C 0.012 3.988 15 N -0.206 5.206 16 N -0.363 5.363 17 C -0.369 4.369 18 H 0.091 0.909 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.734 3.266 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.207 1.207 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.262 0.738 33 H 0.176 0.824 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.220 0.780 38 H 0.219 0.781 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.724 3.158 -8.513 14.829 hybrid contribution -0.617 0.144 0.468 0.787 sum 11.107 3.301 -8.046 14.107 Atomic orbital electron populations 1.21767 0.95673 0.99643 1.03289 1.22069 0.97034 0.98269 1.00041 1.20566 0.89595 0.92977 0.91610 0.92718 1.21820 0.96082 0.82024 1.01421 1.45892 1.06699 1.11566 1.69229 1.17791 0.83317 0.86178 0.78168 1.90753 1.56412 1.44162 1.50541 1.21761 0.90767 0.94170 0.94000 1.22779 0.97023 0.98884 1.01022 1.21800 0.97091 0.88630 0.90213 1.20792 0.88005 1.03636 1.03825 1.68222 1.03374 1.37706 1.13528 1.25024 0.90375 0.92703 0.90663 1.68436 1.39701 1.00713 1.11771 1.42442 1.16983 1.65712 1.11164 1.19191 0.91964 1.27598 0.98103 0.90893 1.24721 0.98011 1.01427 0.96419 1.69665 1.35136 1.48795 1.04058 0.86261 0.84190 0.78813 0.77336 1.21816 1.21874 1.20745 0.89646 0.94089 0.94856 0.93813 0.92480 0.91380 0.91421 0.73822 0.82435 0.89555 0.89737 0.89880 0.78014 0.78098 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.18 37.16 0.34 -2.25 16 2 C -0.13 -2.27 5.61 -26.73 -0.15 -2.42 16 3 C 0.16 3.01 2.59 -67.93 -0.18 2.84 16 4 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 5 C 0.11 1.88 5.23 -4.04 -0.02 1.86 16 6 N -0.68 -12.02 5.38 -61.05 -0.33 -12.35 16 7 C 0.56 9.79 7.83 -12.05 -0.09 9.70 16 8 O -0.54 -10.21 16.43 5.39 0.09 -10.12 16 9 C 0.14 2.20 6.79 -82.63 -0.56 1.64 16 10 C -0.17 -2.25 9.41 -38.90 -0.37 -2.62 16 11 C 0.17 1.96 6.83 -82.24 -0.56 1.40 16 12 C -0.11 -0.77 10.22 36.01 0.37 -0.41 16 13 N -0.51 -6.58 10.36 -10.81 -0.11 -6.69 16 14 C 0.30 4.00 12.28 -92.26 -1.13 2.87 16 15 N -0.49 -7.67 9.70 -11.14 -0.11 -7.78 16 16 N -0.72 -16.56 4.50 -53.43 -0.24 -16.80 16 17 C -0.24 -6.07 7.76 -15.06 -0.12 -6.18 16 18 H 0.07 1.82 7.33 -52.49 -0.38 1.43 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -26.98 13.06 55.49 0.72 -26.25 16 21 Si 0.90 21.64 29.55 -169.99 -5.02 16.61 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H 0.08 1.79 6.01 -51.93 -0.31 1.48 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.42 7.93 7.52 -40.82 -0.31 7.63 16 33 H 0.16 1.79 7.74 -52.49 -0.41 1.39 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 37 H 0.20 2.08 8.06 -52.49 -0.42 1.65 16 38 H 0.38 9.74 7.80 -40.82 -0.32 9.42 16 39 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 333.61 15.07 5.03 5.03 Total: -1.00 -30.32 333.61 -8.05 -38.37 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -5.51 Total: 13.89 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -2.57 Total: 6.09 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -0.06 Total: -69.87 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.32 -8.05 -38.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481804604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.773 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds