Wall clock time and date at job start Tue Mar 31 2020 01:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21475 * 120.00084 * 0.02562 * 7 6 5 9 9 C 1.48459 * 119.99660 * 180.02562 * 7 6 5 10 10 C 1.39543 * 120.54882 * 180.02562 * 9 7 6 11 11 C 1.38756 * 118.26352 * 179.97438 * 10 9 7 12 12 C 1.50701 * 120.42819 * 180.02562 * 11 10 9 13 13 N 1.32214 * 119.14837 * 0.02562 * 11 10 9 14 14 C 1.31884 * 121.03395 * 359.97438 * 13 11 10 15 15 N 1.31578 * 121.91556 * 359.71488 * 14 13 11 16 16 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 17 17 C 1.36943 * 119.99752 * 274.72222 * 16 3 2 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 3 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 3 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47294 * 90.00155 * 21 19 17 23 23 H 1.48499 * 109.47218 * 210.00015 * 21 19 17 24 24 H 1.48496 * 109.47166 * 329.99846 * 21 19 17 25 25 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 26 26 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 27 27 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 29 29 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 30 30 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 31 31 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 32 32 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 33 33 H 1.07995 * 120.86542 * 359.97407 * 10 9 7 34 34 H 1.09000 * 109.46807 * 89.99878 * 12 11 10 35 35 H 1.08992 * 109.47158 * 210.00392 * 12 11 10 36 36 H 1.09006 * 109.46672 * 330.00904 * 12 11 10 37 37 H 1.07992 * 119.03863 * 180.02562 * 14 13 11 38 38 H 0.97001 * 120.00384 * 95.00578 * 16 3 2 39 39 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1647 2.1468 -0.2594 9 6 5.8907 4.4536 0.0349 10 6 7.2577 4.7217 -0.0476 11 6 7.6773 6.0389 0.0721 12 6 9.1420 6.3837 -0.0101 13 7 6.7756 6.9875 0.2593 14 6 5.4907 6.6994 0.3326 15 7 5.0468 5.4661 0.2186 16 7 1.6525 2.0974 1.2518 17 6 0.4178 2.6784 1.3668 18 1 -0.2719 2.6498 0.5362 19 6 0.0527 3.3040 2.5509 20 7 0.8936 3.3393 3.5630 21 14 -1.6317 4.0959 2.7081 22 1 -2.6015 3.0979 3.2266 23 1 -1.5534 5.2440 3.6467 24 1 -2.0795 4.5755 1.3759 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.9955 0.8311 0.6660 31 1 3.8500 1.0376 -1.0960 32 1 3.4412 3.5482 0.1314 33 1 7.9703 3.9248 -0.2006 34 1 9.4099 6.5864 -1.0471 35 1 9.3419 7.2671 0.5962 36 1 9.7337 5.5467 0.3609 37 1 4.7820 7.4997 0.4857 38 1 2.2720 2.1232 1.9978 39 1 0.6383 3.7761 4.3906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481804604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:41 Heat of formation + Delta-G solvation = -6.946358 kcal Electronic energy + Delta-G solvation = -21278.288668 eV Core-core repulsion = 18027.235950 eV Total energy + Delta-G solvation = -3251.052718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.31089 -40.52665 -38.30648 -35.77198 -35.15389 -34.12250 -33.66456 -31.50074 -29.81397 -29.45999 -26.45760 -25.32157 -24.74396 -23.67548 -21.74859 -21.33967 -19.53252 -19.02082 -18.37796 -17.07176 -16.89055 -16.63053 -16.53139 -16.36974 -15.94109 -15.51588 -15.28001 -14.78740 -14.56372 -14.21165 -14.14031 -13.91566 -13.71158 -13.20326 -12.98304 -12.79822 -12.78548 -12.36691 -12.10058 -12.01391 -11.90486 -11.65141 -11.63860 -11.54828 -11.31885 -10.89087 -10.69832 -10.41379 -10.12574 -8.96781 -7.86478 -5.13597 -0.63327 -0.14637 1.50512 1.51291 1.58688 1.60391 1.94144 2.60648 2.71848 2.86527 3.00585 3.40838 3.48979 3.75895 3.87936 3.92210 3.93951 4.34097 4.37817 4.47198 4.48960 4.56471 4.70708 4.74385 4.81655 4.86959 5.01427 5.09067 5.11754 5.21010 5.34095 5.37157 5.55598 5.61882 5.73715 5.77000 6.33393 6.39271 6.87416 7.00358 7.41314 8.12734 8.37218 9.36627 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.004736 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.511246 B = 5910.125496 C = 7246.728642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.164 3.836 4 H 0.057 0.943 5 C 0.117 3.883 6 N -0.688 5.688 7 C 0.562 3.438 8 O -0.560 6.560 9 C 0.115 3.885 10 C -0.171 4.171 11 C 0.175 3.825 12 C -0.103 4.103 13 N -0.517 5.517 14 C 0.294 3.706 15 N -0.518 5.518 16 N -0.728 5.728 17 C -0.216 4.216 18 H 0.080 0.920 19 C -0.072 4.072 20 N -0.968 5.968 21 Si 0.959 3.041 22 H -0.293 1.293 23 H -0.303 1.303 24 H -0.269 1.269 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.417 0.583 33 H 0.172 0.828 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.225 0.775 38 H 0.371 0.629 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.952 3.132 -10.144 16.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.055 3.945 4 H 0.075 0.925 5 C -0.007 4.007 6 N -0.337 5.337 7 C 0.346 3.654 8 O -0.439 6.439 9 C -0.031 4.031 10 C -0.194 4.194 11 C 0.027 3.973 12 C -0.160 4.160 13 N -0.233 5.233 14 C 0.006 3.994 15 N -0.235 5.235 16 N -0.368 5.368 17 C -0.348 4.348 18 H 0.098 0.902 19 C -0.264 4.264 20 N -0.620 5.620 21 Si 0.790 3.210 22 H -0.221 1.221 23 H -0.230 1.230 24 H -0.194 1.194 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.254 0.746 33 H 0.190 0.810 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.242 0.758 38 H 0.203 0.797 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.607 3.213 -10.209 16.538 hybrid contribution -0.809 0.091 0.879 1.199 sum 11.798 3.305 -9.330 15.400 Atomic orbital electron populations 1.21699 0.95981 1.00633 1.01767 1.21978 0.96643 0.96982 1.01255 1.20736 0.90700 0.93587 0.89494 0.92453 1.21774 0.94743 0.81912 1.02229 1.45923 1.06891 1.11469 1.69422 1.18074 0.82939 0.86993 0.77394 1.90724 1.56645 1.45017 1.51514 1.21642 0.92023 0.93340 0.96102 1.22998 0.96036 1.00071 1.00293 1.22510 0.98867 0.87793 0.88114 1.20961 0.85012 1.04717 1.05281 1.68346 1.03321 1.37993 1.13646 1.25512 0.91266 0.92497 0.90097 1.68385 1.40486 1.01518 1.13115 1.42567 1.15974 1.66013 1.12291 1.19500 0.92510 1.25195 0.97597 0.90187 1.25368 1.00975 1.03382 0.96682 1.69816 1.36837 1.50911 1.04411 0.85338 0.80823 0.77453 0.77367 1.22106 1.23001 1.19381 0.93371 0.93208 0.92739 0.90354 0.93425 0.92239 0.89235 0.74566 0.81012 0.87604 0.89077 0.87915 0.75847 0.79689 0.94525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 9.18 71.98 0.66 -4.14 16 2 C -0.13 -4.11 5.61 30.60 0.17 -3.94 16 3 C 0.16 5.88 2.59 44.99 0.12 6.00 16 4 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 5 C 0.12 3.89 5.23 86.38 0.45 4.34 16 6 N -0.69 -24.26 5.38 -465.38 -2.50 -26.76 16 7 C 0.56 19.58 7.83 86.97 0.68 20.26 16 8 O -0.56 -20.92 16.43 -3.64 -0.06 -20.98 16 9 C 0.12 3.59 6.79 42.00 0.29 3.88 16 10 C -0.17 -4.22 9.41 22.71 0.21 -4.00 16 11 C 0.18 3.71 6.83 42.63 0.29 4.00 16 12 C -0.10 -1.19 10.22 71.24 0.73 -0.46 16 13 N -0.52 -12.55 10.36 -188.12 -1.95 -14.50 16 14 C 0.29 7.67 12.28 180.92 2.22 9.89 16 15 N -0.52 -16.29 9.70 -189.15 -1.84 -18.13 16 16 N -0.73 -33.64 4.50 -322.94 -1.45 -35.10 16 17 C -0.22 -11.05 7.76 84.03 0.65 -10.40 16 18 H 0.08 3.92 7.33 -2.91 -0.02 3.90 16 19 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 20 N -0.97 -57.79 13.06 21.65 0.28 -57.51 16 21 Si 0.96 45.06 29.55 68.60 2.03 47.09 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 25 H 0.05 1.97 6.01 -2.39 -0.01 1.96 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 32 H 0.42 15.89 7.52 -92.71 -0.70 15.19 16 33 H 0.17 3.63 7.74 -2.91 -0.02 3.61 16 34 H 0.11 0.89 8.14 -2.39 -0.02 0.88 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 0.83 8.10 -2.38 -0.02 0.81 16 37 H 0.23 4.46 8.06 -2.91 -0.02 4.43 16 38 H 0.37 19.22 7.80 -92.71 -0.72 18.50 16 39 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -65.84 333.61 1.10 -64.74 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: -0.35 Total: 39.21 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 6.94 Total: 21.93 kcal Atomic # 7 Polarization: -144.53 SS G_CDS: -7.46 Total: -151.99 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.06 Total: -20.98 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.84 1.10 -64.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481804604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.791 kcal (2) G-P(sol) polarization free energy of solvation -65.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds