Wall clock time and date at job start Tue Mar 31 2020 01:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47063 * 2 1 4 4 N 1.46497 * 109.47097 * 300.00191 * 3 2 1 5 5 C 1.36938 * 119.99803 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00351 * 359.97438 * 5 4 3 7 7 C 1.38817 * 119.99904 * 180.02562 * 5 4 3 8 8 N 1.31625 * 119.99856 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00034 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47237 * 90.00121 * 9 7 5 11 11 H 1.48503 * 109.46897 * 209.99810 * 9 7 5 12 12 H 1.48496 * 109.47165 * 329.99794 * 9 7 5 13 13 N 1.46497 * 109.47335 * 240.00216 * 2 1 3 14 14 C 1.34773 * 120.00342 * 174.05853 * 13 2 1 15 15 O 1.21572 * 119.99927 * 355.57269 * 14 13 2 16 16 C 1.47712 * 120.00166 * 175.56882 * 14 13 2 17 17 C 1.41508 * 126.51865 * 179.97438 * 16 14 13 18 18 C 1.35367 * 105.50264 * 180.02562 * 17 16 14 19 19 N 1.35034 * 107.22500 * 359.97438 * 18 17 16 20 20 H 0.97008 * 124.87574 * 179.97438 * 19 18 17 21 21 N 1.28465 * 110.23789 * 0.02562 * 19 18 17 22 22 C 1.52998 * 109.47612 * 119.99953 * 2 1 3 23 23 C 1.52999 * 117.49972 * 122.15926 * 22 2 1 24 24 C 1.53001 * 117.49819 * 53.49998 * 22 2 1 25 25 H 1.09001 * 109.46850 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47312 * 299.99564 * 1 2 3 27 27 H 1.09000 * 109.47346 * 59.99853 * 1 2 3 28 28 H 1.09005 * 109.46700 * 60.00062 * 3 2 1 29 29 H 1.08998 * 109.47550 * 180.02562 * 3 2 1 30 30 H 0.97001 * 120.00265 * 359.97438 * 4 3 2 31 31 H 0.96998 * 119.99961 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99964 * 354.06281 * 13 2 1 33 33 H 1.07996 * 127.24807 * 0.03885 * 17 16 14 34 34 H 1.07997 * 126.38339 * 180.02562 * 18 17 16 35 35 H 1.09000 * 115.55395 * 267.83176 * 22 2 1 36 36 H 1.08999 * 117.50155 * 0.02562 * 23 22 2 37 37 H 1.08998 * 117.49905 * 145.02858 * 23 22 2 38 38 H 1.09000 * 117.50494 * 214.98600 * 24 22 2 39 39 H 1.09006 * 117.49450 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1331 -1.1961 5 6 1.8820 3.4443 -1.4125 6 1 2.5022 3.9694 -0.7013 7 6 1.4188 4.0989 -2.5457 8 7 0.6624 3.4591 -3.4123 9 14 1.8700 5.8873 -2.8412 10 1 3.1324 5.9571 -3.6202 11 1 0.7819 6.5532 -3.6014 12 1 2.0544 6.5733 -1.5372 13 7 2.0183 -0.6905 -1.1962 14 6 3.3375 -0.7101 -1.4717 15 8 4.1136 -0.0877 -0.7730 16 6 3.8402 -1.4878 -2.6225 17 6 5.1886 -1.6040 -3.0358 18 6 5.1653 -2.4084 -4.1243 19 7 3.8769 -2.7491 -4.3422 20 1 3.5688 -3.3217 -5.0622 21 7 3.1181 -2.2052 -3.4599 22 6 2.0401 -0.7212 1.2492 23 6 2.9566 -1.9288 1.0430 24 6 1.5145 -2.1336 1.5136 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1299 1.4426 -0.0005 30 1 0.9942 1.6617 -1.8348 31 1 0.3385 3.9165 -4.2039 32 1 1.3922 -1.1337 -1.7900 33 1 6.0540 -1.1474 -2.5788 34 1 6.0182 -2.7203 -4.7087 35 1 2.2319 -0.0856 2.1137 36 1 3.1966 -2.2092 0.0174 37 1 3.7512 -2.0879 1.7720 38 1 1.3609 -2.4273 2.5520 39 1 0.8057 -2.5491 0.7973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495227501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:48 Heat of formation + Delta-G solvation = 92.754644 kcal Electronic energy + Delta-G solvation = -22441.612782 eV Core-core repulsion = 19194.883424 eV Total energy + Delta-G solvation = -3246.729358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.50562 -39.99781 -36.96123 -34.83234 -33.24382 -31.97646 -31.11162 -30.44177 -29.33402 -25.94338 -24.13069 -23.43967 -22.01587 -21.66963 -21.22267 -20.00227 -18.83180 -18.44345 -17.17035 -16.75647 -15.88167 -15.36880 -15.27669 -14.29089 -14.08660 -13.85547 -13.58179 -13.50514 -13.19121 -12.99062 -12.75733 -12.04822 -11.95841 -11.77716 -11.23577 -10.98822 -10.86389 -10.77036 -10.70645 -10.65976 -10.12589 -9.96624 -9.78900 -9.55494 -9.30812 -9.28169 -9.12830 -8.62743 -8.43478 -6.69611 -5.62394 -2.87533 1.80435 2.26989 2.91808 3.52522 3.57343 3.58820 3.60272 3.87842 4.11489 4.66067 4.70883 4.87106 4.95568 5.18324 5.23818 5.38046 5.55407 5.65232 5.73464 5.74932 5.80663 5.85874 5.86785 6.08591 6.15155 6.26492 6.37358 6.40919 6.46295 6.48287 6.73210 6.76197 6.97295 7.08662 7.33310 7.84031 7.85489 8.14471 8.57399 8.78297 9.68364 10.28555 10.63964 11.61046 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013596 B = 0.006696 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.874648 B = 4180.604464 C = 5509.193842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.199 3.801 3 C 0.137 3.863 4 N -0.725 5.725 5 C -0.224 4.224 6 H 0.068 0.932 7 C -0.019 4.019 8 N -0.937 5.937 9 Si 0.904 3.096 10 H -0.292 1.292 11 H -0.293 1.293 12 H -0.283 1.283 13 N -0.703 5.703 14 C 0.611 3.389 15 O -0.515 6.515 16 C -0.003 4.003 17 C -0.180 4.180 18 C -0.022 4.022 19 N -0.387 5.387 20 H 0.443 0.557 21 N -0.261 5.261 22 C -0.144 4.144 23 C -0.165 4.165 24 C -0.183 4.183 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.020 0.980 29 H 0.060 0.940 30 H 0.381 0.619 31 H 0.251 0.749 32 H 0.401 0.599 33 H 0.161 0.839 34 H 0.182 0.818 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.589 -17.310 2.034 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.113 3.887 3 C 0.009 3.991 4 N -0.370 5.370 5 C -0.356 4.356 6 H 0.086 0.914 7 C -0.214 4.214 8 N -0.587 5.587 9 Si 0.736 3.264 10 H -0.220 1.220 11 H -0.220 1.220 12 H -0.209 1.209 13 N -0.354 5.354 14 C 0.395 3.605 15 O -0.388 6.388 16 C -0.165 4.165 17 C -0.208 4.208 18 C -0.166 4.166 19 N -0.101 5.101 20 H 0.287 0.713 21 N -0.097 5.097 22 C -0.163 4.163 23 C -0.202 4.202 24 C -0.220 4.220 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.215 0.785 31 H 0.061 0.939 32 H 0.235 0.765 33 H 0.179 0.821 34 H 0.199 0.801 35 H 0.127 0.873 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.138 -16.965 2.414 17.629 hybrid contribution 0.503 0.614 -1.161 1.407 sum 4.642 -16.351 1.253 17.043 Atomic orbital electron populations 1.21980 0.93134 1.01322 1.04038 1.20096 0.93748 0.92732 0.82079 1.21223 0.99486 0.87571 0.90809 1.42248 1.61155 1.10403 1.23148 1.19245 1.24576 0.87592 1.04146 0.91363 1.24673 1.01042 0.98106 0.97589 1.69661 1.40005 1.35903 1.13174 0.86209 0.77293 0.85283 0.77598 1.21994 1.21997 1.20857 1.45806 1.06990 1.55882 1.26694 1.16602 0.82601 0.79485 0.81815 1.90749 1.56444 1.42180 1.49472 1.22254 0.92556 1.02736 0.98977 1.21818 0.97480 1.03159 0.98301 1.22884 0.88773 1.03571 1.01382 1.43325 1.04944 1.37824 1.24020 0.71273 1.73546 1.23115 1.11640 1.01398 1.22589 1.03980 0.90211 0.99552 1.22932 0.92769 1.02367 1.02141 1.22962 0.97547 1.00014 1.01450 0.92911 0.91001 0.90712 0.96212 0.92241 0.78453 0.93874 0.76505 0.82096 0.80072 0.87265 0.89006 0.89481 0.89357 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.18 37.16 0.30 -2.03 16 2 C 0.20 3.49 0.55 -131.82 -0.07 3.41 16 3 C 0.14 3.05 4.81 -4.04 -0.02 3.03 16 4 N -0.73 -19.21 5.17 -59.91 -0.31 -19.52 16 5 C -0.22 -6.62 9.99 -15.06 -0.15 -6.77 16 6 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 7 C -0.02 -0.57 5.50 -17.43 -0.10 -0.67 16 8 N -0.94 -29.23 13.06 55.49 0.72 -28.51 16 9 Si 0.90 23.52 29.55 -169.99 -5.02 18.49 16 10 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 11 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 12 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 13 N -0.70 -12.24 4.17 -48.58 -0.20 -12.44 16 14 C 0.61 11.58 4.86 -12.39 -0.06 11.51 16 15 O -0.52 -11.11 13.25 5.30 0.07 -11.04 16 16 C 0.00 -0.06 7.13 -82.76 -0.59 -0.65 16 17 C -0.18 -2.53 10.81 -39.36 -0.43 -2.96 16 18 C -0.02 -0.22 12.02 -17.17 -0.21 -0.43 16 19 N -0.39 -4.05 6.83 30.47 0.21 -3.84 16 20 H 0.44 2.75 8.96 -190.43 -1.71 1.04 16 21 N -0.26 -3.80 11.93 33.42 0.40 -3.40 16 22 C -0.14 -2.19 4.89 -90.62 -0.44 -2.64 16 23 C -0.16 -2.40 8.62 -26.69 -0.23 -2.63 16 24 C -0.18 -2.30 9.68 -26.69 -0.26 -2.56 16 25 H 0.05 0.69 6.91 -51.93 -0.36 0.33 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 1.36 6.86 -51.93 -0.36 1.01 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 1.47 5.63 -51.93 -0.29 1.18 16 30 H 0.38 10.44 6.35 -40.82 -0.26 10.18 16 31 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.40 6.49 8.21 -40.82 -0.34 6.15 16 33 H 0.16 2.16 8.06 -52.49 -0.42 1.73 16 34 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.11 1.64 8.06 -51.93 -0.42 1.23 16 36 H 0.09 1.45 5.21 -51.93 -0.27 1.18 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.10 7.20 -51.93 -0.37 0.73 16 LS Contribution 320.55 15.07 4.83 4.83 Total: -1.00 -35.75 320.55 -8.01 -43.75 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -6.45 Total: 15.04 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -2.25 Total: -3.36 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: 0.82 Total: -67.71 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.07 Total: -11.04 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.02 Total: 18.49 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.75 -8.01 -43.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495227501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.509 kcal (2) G-P(sol) polarization free energy of solvation -35.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds