Wall clock time and date at job start Tue Mar 31 2020 01:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47063 * 2 1 4 4 N 1.46497 * 109.47097 * 300.00191 * 3 2 1 5 5 C 1.36938 * 119.99803 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00351 * 359.97438 * 5 4 3 7 7 C 1.38817 * 119.99904 * 180.02562 * 5 4 3 8 8 N 1.31625 * 119.99856 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00034 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47237 * 90.00121 * 9 7 5 11 11 H 1.48503 * 109.46897 * 209.99810 * 9 7 5 12 12 H 1.48496 * 109.47165 * 329.99794 * 9 7 5 13 13 N 1.46497 * 109.47335 * 240.00216 * 2 1 3 14 14 C 1.34773 * 120.00342 * 174.05853 * 13 2 1 15 15 O 1.21572 * 119.99927 * 355.57269 * 14 13 2 16 16 C 1.47712 * 120.00166 * 175.56882 * 14 13 2 17 17 C 1.41508 * 126.51865 * 179.97438 * 16 14 13 18 18 C 1.35367 * 105.50264 * 180.02562 * 17 16 14 19 19 N 1.35034 * 107.22500 * 359.97438 * 18 17 16 20 20 H 0.97008 * 124.87574 * 179.97438 * 19 18 17 21 21 N 1.28465 * 110.23789 * 0.02562 * 19 18 17 22 22 C 1.52998 * 109.47612 * 119.99953 * 2 1 3 23 23 C 1.52999 * 117.49972 * 122.15926 * 22 2 1 24 24 C 1.53001 * 117.49819 * 53.49998 * 22 2 1 25 25 H 1.09001 * 109.46850 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47312 * 299.99564 * 1 2 3 27 27 H 1.09000 * 109.47346 * 59.99853 * 1 2 3 28 28 H 1.09005 * 109.46700 * 60.00062 * 3 2 1 29 29 H 1.08998 * 109.47550 * 180.02562 * 3 2 1 30 30 H 0.97001 * 120.00265 * 359.97438 * 4 3 2 31 31 H 0.96998 * 119.99961 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99964 * 354.06281 * 13 2 1 33 33 H 1.07996 * 127.24807 * 0.03885 * 17 16 14 34 34 H 1.07997 * 126.38339 * 180.02562 * 18 17 16 35 35 H 1.09000 * 115.55395 * 267.83176 * 22 2 1 36 36 H 1.08999 * 117.50155 * 0.02562 * 23 22 2 37 37 H 1.08998 * 117.49905 * 145.02858 * 23 22 2 38 38 H 1.09000 * 117.50494 * 214.98600 * 24 22 2 39 39 H 1.09006 * 117.49450 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1331 -1.1961 5 6 1.8820 3.4443 -1.4125 6 1 2.5022 3.9694 -0.7013 7 6 1.4188 4.0989 -2.5457 8 7 0.6624 3.4591 -3.4123 9 14 1.8700 5.8873 -2.8412 10 1 3.1324 5.9571 -3.6202 11 1 0.7819 6.5532 -3.6014 12 1 2.0544 6.5733 -1.5372 13 7 2.0183 -0.6905 -1.1962 14 6 3.3375 -0.7101 -1.4717 15 8 4.1136 -0.0877 -0.7730 16 6 3.8402 -1.4878 -2.6225 17 6 5.1886 -1.6040 -3.0358 18 6 5.1653 -2.4084 -4.1243 19 7 3.8769 -2.7491 -4.3422 20 1 3.5688 -3.3217 -5.0622 21 7 3.1181 -2.2052 -3.4599 22 6 2.0401 -0.7212 1.2492 23 6 2.9566 -1.9288 1.0430 24 6 1.5145 -2.1336 1.5136 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1299 1.4426 -0.0005 30 1 0.9942 1.6617 -1.8348 31 1 0.3385 3.9165 -4.2039 32 1 1.3922 -1.1337 -1.7900 33 1 6.0540 -1.1474 -2.5788 34 1 6.0182 -2.7203 -4.7087 35 1 2.2319 -0.0856 2.1137 36 1 3.1966 -2.2092 0.0174 37 1 3.7512 -2.0879 1.7720 38 1 1.3609 -2.4273 2.5520 39 1 0.8057 -2.5491 0.7973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495227501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:47 Heat of formation + Delta-G solvation = 65.763325 kcal Electronic energy + Delta-G solvation = -22442.783214 eV Core-core repulsion = 19194.883424 eV Total energy + Delta-G solvation = -3247.899790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.52131 -41.38275 -38.33899 -36.56431 -34.90419 -33.46808 -32.50557 -31.68003 -30.90493 -27.65506 -25.74544 -25.01380 -23.10641 -22.92535 -22.58740 -21.25494 -20.25800 -19.42316 -19.20957 -18.01639 -17.25022 -16.90662 -16.44003 -16.25224 -15.48773 -15.26831 -15.01846 -14.97186 -14.58961 -14.56308 -14.01588 -13.53171 -13.49939 -13.26834 -12.98773 -12.80426 -12.41133 -12.26792 -12.11461 -11.99419 -11.93345 -11.75757 -11.27644 -11.13898 -10.93434 -10.52386 -10.37674 -10.11556 -9.87797 -8.88864 -7.92856 -5.18507 0.64294 1.28462 1.43785 1.46441 1.54763 2.00471 2.38578 2.53841 2.56482 2.97069 3.39684 3.52709 3.67161 3.97278 4.02011 4.12126 4.19583 4.29111 4.38655 4.39933 4.57943 4.79089 4.79783 4.81115 4.91873 4.93987 4.97229 5.08741 5.23273 5.31327 5.35083 5.35832 5.39694 5.48929 5.75839 6.22285 6.29745 6.63352 6.95643 7.35914 7.38898 8.12999 8.39971 9.30523 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013596 B = 0.006696 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.874648 B = 4180.604464 C = 5509.193842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.205 3.795 3 C 0.137 3.863 4 N -0.730 5.730 5 C -0.239 4.239 6 H 0.065 0.935 7 C -0.075 4.075 8 N -0.967 5.967 9 Si 0.970 3.030 10 H -0.292 1.292 11 H -0.290 1.290 12 H -0.271 1.271 13 N -0.697 5.697 14 C 0.605 3.395 15 O -0.554 6.554 16 C -0.042 4.042 17 C -0.215 4.215 18 C 0.014 3.986 19 N -0.367 5.367 20 H 0.464 0.536 21 N -0.275 5.275 22 C -0.162 4.162 23 C -0.173 4.173 24 C -0.148 4.148 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.020 0.980 29 H 0.034 0.966 30 H 0.375 0.625 31 H 0.250 0.750 32 H 0.406 0.594 33 H 0.157 0.843 34 H 0.235 0.765 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.676 -18.902 1.586 19.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.119 3.881 3 C 0.010 3.990 4 N -0.373 5.373 5 C -0.371 4.371 6 H 0.083 0.917 7 C -0.267 4.267 8 N -0.618 5.618 9 Si 0.800 3.200 10 H -0.219 1.219 11 H -0.217 1.217 12 H -0.196 1.196 13 N -0.348 5.348 14 C 0.391 3.609 15 O -0.431 6.431 16 C -0.202 4.202 17 C -0.244 4.244 18 C -0.131 4.131 19 N -0.084 5.084 20 H 0.312 0.688 21 N -0.113 5.113 22 C -0.182 4.182 23 C -0.210 4.210 24 C -0.185 4.185 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.208 0.792 31 H 0.058 0.942 32 H 0.241 0.759 33 H 0.175 0.825 34 H 0.252 0.748 35 H 0.126 0.874 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.202 -18.591 1.976 19.162 hybrid contribution 0.542 1.035 -1.068 1.584 sum 4.744 -17.555 0.908 18.208 Atomic orbital electron populations 1.21917 0.91676 1.03115 1.02930 1.19969 0.94690 0.90042 0.83396 1.21269 0.97958 0.90697 0.89076 1.42330 1.60963 1.09764 1.24205 1.19576 1.24264 0.89020 1.04229 0.91733 1.25467 1.01407 1.02337 0.97471 1.69811 1.41067 1.37430 1.13499 0.85177 0.76753 0.80367 0.77727 1.21912 1.21656 1.19641 1.45785 1.06844 1.55430 1.26738 1.17011 0.82611 0.79133 0.82163 1.90708 1.57293 1.44026 1.51051 1.22108 0.94039 1.04498 0.99560 1.22041 0.96528 1.05384 1.00408 1.23530 0.89600 1.00449 0.99471 1.43467 1.05030 1.36614 1.23295 0.68786 1.73453 1.23841 1.12005 1.02008 1.22472 1.05993 0.91322 0.98376 1.22906 0.94318 1.02173 1.01649 1.23056 0.95852 0.96508 1.03048 0.89604 0.90329 0.93505 0.96219 0.94791 0.79215 0.94163 0.75890 0.82528 0.74825 0.87378 0.90483 0.88988 0.86820 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 8.18 71.98 0.59 -3.74 16 2 C 0.21 7.27 0.55 3.60 0.00 7.27 16 3 C 0.14 6.35 4.81 86.38 0.42 6.77 16 4 N -0.73 -39.99 5.17 -343.45 -1.78 -41.76 16 5 C -0.24 -14.46 9.99 84.03 0.84 -13.62 16 6 H 0.06 3.87 7.83 -2.91 -0.02 3.84 16 7 C -0.07 -4.54 5.50 84.86 0.47 -4.07 16 8 N -0.97 -61.27 13.06 21.65 0.28 -60.98 16 9 Si 0.97 48.90 29.55 68.60 2.03 50.93 16 10 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 11 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 12 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 13 N -0.70 -24.90 4.17 -425.89 -1.78 -26.68 16 14 C 0.60 23.86 4.86 86.75 0.42 24.28 16 15 O -0.55 -25.28 13.25 -3.94 -0.05 -25.33 16 16 C -0.04 -1.43 7.13 42.46 0.30 -1.13 16 17 C -0.22 -6.01 10.81 22.41 0.24 -5.77 16 18 C 0.01 0.25 12.02 83.54 1.00 1.26 16 19 N -0.37 -6.76 6.83 -57.51 -0.39 -7.15 16 20 H 0.46 4.24 8.96 -219.98 -1.97 2.27 16 21 N -0.28 -7.82 11.93 -48.17 -0.57 -8.39 16 22 C -0.16 -4.87 4.89 -10.79 -0.05 -4.93 16 23 C -0.17 -4.95 8.62 30.62 0.26 -4.68 16 24 C -0.15 -3.35 9.68 30.62 0.30 -3.06 16 25 H 0.09 2.08 6.91 -2.39 -0.02 2.06 16 26 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 27 H 0.05 1.72 6.86 -2.39 -0.02 1.71 16 28 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.03 1.78 5.63 -2.39 -0.01 1.76 16 30 H 0.37 21.28 6.35 -92.71 -0.59 20.69 16 31 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 32 H 0.41 13.37 8.21 -92.71 -0.76 12.61 16 33 H 0.16 4.34 8.06 -2.91 -0.02 4.31 16 34 H 0.24 1.43 8.06 -2.91 -0.02 1.40 16 35 H 0.11 3.24 8.06 -2.39 -0.02 3.22 16 36 H 0.08 2.47 5.21 -2.39 -0.01 2.45 16 37 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.10 2.11 7.20 -2.38 -0.02 2.09 16 Total: -1.00 -80.37 320.55 0.31 -80.05 By element: Atomic # 1 Polarization: 42.96 SS G_CDS: -2.21 Total: 40.74 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 4.79 Total: -1.42 kcal Atomic # 7 Polarization: -140.74 SS G_CDS: -4.24 Total: -144.97 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.05 Total: -25.33 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.03 Total: 50.93 kcal Total: -80.37 0.31 -80.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495227501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.815 kcal (2) G-P(sol) polarization free energy of solvation -80.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds