Wall clock time and date at job start Tue Mar 31 2020 01:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47326 * 2 1 4 4 N 1.46504 * 109.47222 * 180.02562 * 3 2 1 5 5 C 1.36928 * 120.00225 * 180.02562 * 4 3 2 6 6 H 1.08010 * 120.00221 * 359.71786 * 5 4 3 7 7 C 1.38810 * 120.00446 * 179.97438 * 5 4 3 8 8 N 1.31618 * 120.00451 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99700 * 359.97438 * 7 5 4 10 10 H 1.48491 * 109.47194 * 89.99916 * 9 7 5 11 11 H 1.48497 * 109.47179 * 210.00428 * 9 7 5 12 12 H 1.48503 * 109.46906 * 330.00108 * 9 7 5 13 13 N 1.46502 * 109.46705 * 120.00211 * 2 1 3 14 14 C 1.34775 * 120.00018 * 298.25197 * 13 2 1 15 15 O 1.21567 * 120.00033 * 5.13683 * 14 13 2 16 16 C 1.47705 * 119.99876 * 185.13324 * 14 13 2 17 17 C 1.41498 * 126.52014 * 180.02562 * 16 14 13 18 18 C 1.35366 * 105.50940 * 179.97438 * 17 16 14 19 19 N 1.35038 * 107.22471 * 0.02562 * 18 17 16 20 20 H 0.97001 * 124.88238 * 180.02562 * 19 18 17 21 21 N 1.28466 * 110.22859 * 359.74789 * 19 18 17 22 22 C 1.52998 * 109.46739 * 239.99724 * 2 1 3 23 23 C 1.53003 * 117.50221 * 12.05277 * 22 2 1 24 24 C 1.52996 * 117.50374 * 303.38731 * 22 2 1 25 25 H 1.08999 * 109.47124 * 59.99811 * 1 2 3 26 26 H 1.09004 * 109.47371 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46785 * 299.99929 * 1 2 3 28 28 H 1.08995 * 109.47207 * 60.00063 * 3 2 1 29 29 H 1.08999 * 109.47174 * 300.00159 * 3 2 1 30 30 H 0.97001 * 119.99566 * 359.97438 * 4 3 2 31 31 H 0.97003 * 120.00244 * 180.02562 * 8 7 5 32 32 H 0.97009 * 119.99593 * 118.26030 * 13 2 1 33 33 H 1.08003 * 127.24648 * 359.97438 * 17 16 14 34 34 H 1.07994 * 126.38673 * 179.97438 * 18 17 16 35 35 H 1.09008 * 115.55078 * 157.71907 * 22 2 1 36 36 H 1.08998 * 117.49424 * 359.97438 * 23 22 2 37 37 H 1.08993 * 117.49899 * 145.01981 * 23 22 2 38 38 H 1.08995 * 117.50307 * 214.97954 * 24 22 2 39 39 H 1.09003 * 117.49622 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1898 2.6282 -0.0002 6 1 3.6498 3.5636 -0.0040 7 6 5.5779 2.6282 -0.0002 8 7 6.2360 3.7680 0.0007 9 14 6.5119 1.0104 -0.0002 10 1 6.7593 0.5816 -1.4001 11 1 7.8094 1.1879 0.6999 12 1 5.7092 -0.0244 0.7000 13 7 2.0182 -0.6907 1.1962 14 6 1.7219 -0.2101 2.4200 15 8 0.9734 0.7409 2.5347 16 6 2.3066 -0.8389 3.6218 17 6 2.0910 -0.4500 4.9651 18 6 2.8251 -1.3073 5.7124 19 7 3.4404 -2.1548 4.8601 20 1 4.0323 -2.8760 5.1256 21 7 3.1246 -1.8721 3.6473 22 6 2.0399 -0.7213 -1.2492 23 6 1.0240 -1.0302 -2.3509 24 6 1.5713 -2.1601 -1.4750 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6767 1.9562 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9900 0.6023 -0.0006 31 1 7.2061 3.7680 0.0003 32 1 2.5549 -1.4939 1.1073 33 1 1.4712 0.3604 5.3196 34 1 2.9044 -1.3120 6.7895 35 1 3.0546 -0.4684 -1.5569 36 1 -0.0076 -0.7199 -2.1854 37 1 1.3705 -0.9809 -3.3831 38 1 2.2774 -2.8537 -1.9316 39 1 0.8993 -2.5928 -0.7338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495227502.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:51 Heat of formation + Delta-G solvation = 89.345871 kcal Electronic energy + Delta-G solvation = -22372.297432 eV Core-core repulsion = 19125.420258 eV Total energy + Delta-G solvation = -3246.877174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.57902 -39.95067 -37.67078 -34.75013 -33.48015 -32.06294 -31.18339 -30.66369 -29.70135 -26.08745 -24.46461 -23.09578 -22.23815 -21.78113 -21.67420 -19.74820 -18.91337 -18.47199 -17.57529 -17.12266 -15.74734 -15.64371 -15.10877 -14.67424 -14.25649 -14.17748 -13.76062 -13.66933 -13.26477 -12.89648 -12.74065 -12.31690 -12.19765 -11.97559 -11.66773 -11.10483 -10.98776 -10.90739 -10.83595 -10.72332 -10.24478 -10.15915 -9.86703 -9.52598 -9.48233 -9.38608 -9.20143 -8.76024 -8.59427 -7.07634 -5.66715 -2.99587 1.70312 2.18542 2.83357 3.34835 3.40964 3.44633 3.48251 3.75099 4.05646 4.56133 4.67006 4.74662 4.80951 5.02309 5.11921 5.21532 5.33516 5.38288 5.62075 5.64816 5.68419 5.74853 5.79007 5.93405 6.00047 6.04056 6.17198 6.22030 6.38269 6.39837 6.54942 6.63100 6.86825 6.95118 7.09141 7.73247 8.00498 8.11859 8.52316 8.59572 9.32749 10.05147 10.26412 11.52336 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.011237 B = 0.008163 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.214805 B = 3429.373155 C = 4778.725216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.198 3.802 3 C 0.148 3.852 4 N -0.750 5.750 5 C -0.231 4.231 6 H 0.090 0.910 7 C 0.001 3.999 8 N -0.937 5.937 9 Si 0.879 3.121 10 H -0.285 1.285 11 H -0.293 1.293 12 H -0.277 1.277 13 N -0.702 5.702 14 C 0.610 3.390 15 O -0.524 6.524 16 C -0.004 4.004 17 C -0.178 4.178 18 C -0.020 4.020 19 N -0.387 5.387 20 H 0.444 0.556 21 N -0.262 5.262 22 C -0.155 4.155 23 C -0.168 4.168 24 C -0.183 4.183 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.035 0.965 30 H 0.359 0.641 31 H 0.257 0.743 32 H 0.401 0.599 33 H 0.163 0.837 34 H 0.183 0.817 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.067 -16.596 6.628 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.113 3.887 3 C 0.020 3.980 4 N -0.396 5.396 5 C -0.361 4.361 6 H 0.108 0.892 7 C -0.194 4.194 8 N -0.586 5.586 9 Si 0.710 3.290 10 H -0.212 1.212 11 H -0.220 1.220 12 H -0.203 1.203 13 N -0.353 5.353 14 C 0.394 3.606 15 O -0.398 6.398 16 C -0.166 4.166 17 C -0.206 4.206 18 C -0.164 4.164 19 N -0.100 5.100 20 H 0.288 0.712 21 N -0.098 5.098 22 C -0.174 4.174 23 C -0.206 4.206 24 C -0.220 4.220 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.192 0.808 31 H 0.067 0.933 32 H 0.236 0.764 33 H 0.180 0.820 34 H 0.201 0.799 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.051 -16.346 5.989 20.102 hybrid contribution 1.298 -1.294 0.744 1.979 sum -8.753 -17.641 6.734 20.812 Atomic orbital electron populations 1.22297 0.94305 1.01753 1.03787 1.20122 0.93566 0.93123 0.81900 1.21050 0.85101 0.91660 1.00188 1.42618 1.00795 1.05096 1.91065 1.19089 0.89451 0.85952 1.41650 0.89223 1.24623 0.96075 0.96007 1.02679 1.69699 1.06762 1.23705 1.58475 0.86598 0.79777 0.84989 0.77611 1.21231 1.21969 1.20326 1.45818 1.54707 1.30011 1.04734 1.16723 0.80176 0.82325 0.81339 1.90726 1.36106 1.27008 1.85988 1.22145 1.01688 0.97157 0.95572 1.21822 1.04741 1.02919 0.91137 1.22909 1.00241 0.95239 0.98058 1.43328 1.36567 1.26881 1.03261 0.71209 1.73537 1.15553 1.17088 1.03652 1.22545 1.00624 0.97257 0.96938 1.23074 0.99236 1.02488 0.95783 1.22969 1.04061 0.91435 1.03538 0.91397 0.92875 0.89988 0.92873 0.94737 0.80831 0.93287 0.76402 0.81957 0.79945 0.86583 0.87977 0.88760 0.88943 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 7.06 37.16 0.26 -2.11 16 2 C 0.20 3.32 0.54 -131.82 -0.07 3.24 16 3 C 0.15 3.16 4.94 -4.04 -0.02 3.14 16 4 N -0.75 -18.77 4.83 -59.91 -0.29 -19.06 16 5 C -0.23 -6.88 10.47 -15.06 -0.16 -7.04 16 6 H 0.09 2.87 8.06 -52.48 -0.42 2.45 16 7 C 0.00 0.03 5.50 -17.43 -0.10 -0.06 16 8 N -0.94 -30.55 13.97 55.49 0.78 -29.77 16 9 Si 0.88 23.02 27.74 -169.99 -4.71 18.31 16 10 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 12 H -0.28 -6.92 6.52 56.52 0.37 -6.55 16 13 N -0.70 -11.81 4.73 -48.59 -0.23 -12.04 16 14 C 0.61 11.20 7.23 -12.39 -0.09 11.11 16 15 O -0.52 -10.76 13.16 5.31 0.07 -10.69 16 16 C 0.00 -0.07 7.13 -82.77 -0.59 -0.66 16 17 C -0.18 -2.43 10.81 -39.36 -0.43 -2.85 16 18 C -0.02 -0.20 12.02 -17.17 -0.21 -0.41 16 19 N -0.39 -3.97 6.83 30.47 0.21 -3.76 16 20 H 0.44 2.69 8.96 -190.44 -1.71 0.98 16 21 N -0.26 -3.78 11.93 33.42 0.40 -3.38 16 22 C -0.15 -2.32 4.86 -90.62 -0.44 -2.76 16 23 C -0.17 -2.04 9.63 -26.69 -0.26 -2.30 16 24 C -0.18 -2.16 9.72 -26.69 -0.26 -2.41 16 25 H 0.07 0.89 6.81 -51.93 -0.35 0.54 16 26 H 0.05 0.68 7.00 -51.93 -0.36 0.31 16 27 H 0.08 1.34 6.12 -51.93 -0.32 1.02 16 28 H 0.05 1.27 6.22 -51.93 -0.32 0.94 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.36 8.74 4.49 -40.82 -0.18 8.56 16 31 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 32 H 0.40 6.25 8.11 -40.82 -0.33 5.92 16 33 H 0.16 2.07 8.06 -52.48 -0.42 1.64 16 34 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.12 2.01 7.09 -51.92 -0.37 1.65 16 36 H 0.10 1.14 5.87 -51.93 -0.31 0.84 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.09 1.04 7.39 -51.93 -0.38 0.66 16 LS Contribution 318.81 15.07 4.80 4.80 Total: -1.00 -36.63 318.81 -7.67 -44.30 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -6.34 Total: 14.38 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.35 Total: -3.11 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: 0.86 Total: -68.00 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.07 Total: -10.69 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.71 Total: 18.31 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.63 -7.67 -44.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495227502.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.648 kcal (2) G-P(sol) polarization free energy of solvation -36.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds