Wall clock time and date at job start Tue Mar 31 2020 01:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47326 * 2 1 4 4 N 1.46504 * 109.47222 * 180.02562 * 3 2 1 5 5 C 1.36928 * 120.00225 * 180.02562 * 4 3 2 6 6 H 1.08010 * 120.00221 * 359.71786 * 5 4 3 7 7 C 1.38810 * 120.00446 * 179.97438 * 5 4 3 8 8 N 1.31618 * 120.00451 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99700 * 359.97438 * 7 5 4 10 10 H 1.48491 * 109.47194 * 89.99916 * 9 7 5 11 11 H 1.48497 * 109.47179 * 210.00428 * 9 7 5 12 12 H 1.48503 * 109.46906 * 330.00108 * 9 7 5 13 13 N 1.46502 * 109.46705 * 120.00211 * 2 1 3 14 14 C 1.34775 * 120.00018 * 298.25197 * 13 2 1 15 15 O 1.21567 * 120.00033 * 5.13683 * 14 13 2 16 16 C 1.47705 * 119.99876 * 185.13324 * 14 13 2 17 17 C 1.41498 * 126.52014 * 180.02562 * 16 14 13 18 18 C 1.35366 * 105.50940 * 179.97438 * 17 16 14 19 19 N 1.35038 * 107.22471 * 0.02562 * 18 17 16 20 20 H 0.97001 * 124.88238 * 180.02562 * 19 18 17 21 21 N 1.28466 * 110.22859 * 359.74789 * 19 18 17 22 22 C 1.52998 * 109.46739 * 239.99724 * 2 1 3 23 23 C 1.53003 * 117.50221 * 12.05277 * 22 2 1 24 24 C 1.52996 * 117.50374 * 303.38731 * 22 2 1 25 25 H 1.08999 * 109.47124 * 59.99811 * 1 2 3 26 26 H 1.09004 * 109.47371 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46785 * 299.99929 * 1 2 3 28 28 H 1.08995 * 109.47207 * 60.00063 * 3 2 1 29 29 H 1.08999 * 109.47174 * 300.00159 * 3 2 1 30 30 H 0.97001 * 119.99566 * 359.97438 * 4 3 2 31 31 H 0.97003 * 120.00244 * 180.02562 * 8 7 5 32 32 H 0.97009 * 119.99593 * 118.26030 * 13 2 1 33 33 H 1.08003 * 127.24648 * 359.97438 * 17 16 14 34 34 H 1.07994 * 126.38673 * 179.97438 * 18 17 16 35 35 H 1.09008 * 115.55078 * 157.71907 * 22 2 1 36 36 H 1.08998 * 117.49424 * 359.97438 * 23 22 2 37 37 H 1.08993 * 117.49899 * 145.01981 * 23 22 2 38 38 H 1.08995 * 117.50307 * 214.97954 * 24 22 2 39 39 H 1.09003 * 117.49622 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1898 2.6282 -0.0002 6 1 3.6498 3.5636 -0.0040 7 6 5.5779 2.6282 -0.0002 8 7 6.2360 3.7680 0.0007 9 14 6.5119 1.0104 -0.0002 10 1 6.7593 0.5816 -1.4001 11 1 7.8094 1.1879 0.6999 12 1 5.7092 -0.0244 0.7000 13 7 2.0182 -0.6907 1.1962 14 6 1.7219 -0.2101 2.4200 15 8 0.9734 0.7409 2.5347 16 6 2.3066 -0.8389 3.6218 17 6 2.0910 -0.4500 4.9651 18 6 2.8251 -1.3073 5.7124 19 7 3.4404 -2.1548 4.8601 20 1 4.0323 -2.8760 5.1256 21 7 3.1246 -1.8721 3.6473 22 6 2.0399 -0.7213 -1.2492 23 6 1.0240 -1.0302 -2.3509 24 6 1.5713 -2.1601 -1.4750 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6767 1.9562 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9900 0.6023 -0.0006 31 1 7.2061 3.7680 0.0003 32 1 2.5549 -1.4939 1.1073 33 1 1.4712 0.3604 5.3196 34 1 2.9044 -1.3120 6.7895 35 1 3.0546 -0.4684 -1.5569 36 1 -0.0076 -0.7199 -2.1854 37 1 1.3705 -0.9809 -3.3831 38 1 2.2774 -2.8537 -1.9316 39 1 0.8993 -2.5928 -0.7338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495227502.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:51 Heat of formation + Delta-G solvation = 60.910371 kcal Electronic energy + Delta-G solvation = -22373.530487 eV Core-core repulsion = 19125.420258 eV Total energy + Delta-G solvation = -3248.110230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -43.54588 -41.28088 -38.93466 -36.52304 -35.05316 -33.55454 -32.80985 -31.79740 -31.02151 -27.80529 -25.82855 -24.40308 -23.81865 -23.12681 -22.59958 -20.93212 -20.36966 -19.72109 -19.34177 -18.28735 -16.98466 -16.74551 -16.65523 -16.50914 -15.64783 -15.53584 -15.36742 -14.75952 -14.61964 -14.47145 -14.08309 -13.89008 -13.84021 -13.37662 -13.19701 -12.88503 -12.37208 -12.32331 -12.10541 -12.03099 -11.96362 -11.85881 -11.29948 -11.12209 -10.98836 -10.77414 -10.43393 -10.14126 -9.97238 -9.27955 -8.05065 -5.36840 0.57432 1.25569 1.29363 1.34163 1.41308 1.91619 2.27709 2.43842 2.46892 3.01649 3.25264 3.46026 3.54335 3.71980 3.83823 4.07656 4.13227 4.17511 4.24570 4.38008 4.59871 4.76888 4.78493 4.80301 4.85706 4.87959 4.96633 5.03173 5.09094 5.25668 5.32442 5.35451 5.43033 5.61742 5.72979 6.17936 6.19229 6.56360 6.91255 7.04991 7.26680 7.80530 8.03365 9.17160 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.011237 B = 0.008163 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.214805 B = 3429.373155 C = 4778.725216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.206 3.794 3 C 0.147 3.853 4 N -0.745 5.745 5 C -0.230 4.230 6 H 0.050 0.950 7 C -0.064 4.064 8 N -0.984 5.984 9 Si 0.955 3.045 10 H -0.271 1.271 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.697 5.697 14 C 0.600 3.400 15 O -0.560 6.560 16 C -0.043 4.043 17 C -0.213 4.213 18 C 0.015 3.985 19 N -0.367 5.367 20 H 0.464 0.536 21 N -0.277 5.277 22 C -0.185 4.185 23 C -0.157 4.157 24 C -0.157 4.157 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.024 0.976 29 H 0.032 0.968 30 H 0.365 0.635 31 H 0.258 0.742 32 H 0.408 0.592 33 H 0.159 0.841 34 H 0.236 0.764 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.974 -20.393 7.181 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.121 3.879 3 C 0.020 3.980 4 N -0.390 5.390 5 C -0.361 4.361 6 H 0.068 0.932 7 C -0.255 4.255 8 N -0.635 5.635 9 Si 0.782 3.218 10 H -0.197 1.197 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.347 5.347 14 C 0.386 3.614 15 O -0.437 6.437 16 C -0.202 4.202 17 C -0.241 4.241 18 C -0.130 4.130 19 N -0.084 5.084 20 H 0.312 0.688 21 N -0.115 5.115 22 C -0.204 4.204 23 C -0.194 4.194 24 C -0.194 4.194 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.199 0.801 31 H 0.067 0.933 32 H 0.244 0.756 33 H 0.177 0.823 34 H 0.252 0.748 35 H 0.109 0.891 36 H 0.132 0.868 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.977 -20.203 6.526 23.458 hybrid contribution 1.238 -0.050 0.649 1.398 sum -8.739 -20.253 7.175 23.196 Atomic orbital electron populations 1.22222 0.92450 1.03204 1.03376 1.19968 0.94787 0.90149 0.83022 1.21106 0.83034 0.95427 0.98465 1.42498 1.02181 1.03657 1.90710 1.19035 0.89875 0.86328 1.40905 0.93216 1.25469 0.96994 1.00218 1.02829 1.69892 1.07065 1.26542 1.60025 0.85400 0.77808 0.80213 0.78360 1.19670 1.22092 1.18405 1.45824 1.54490 1.29988 1.04432 1.17185 0.79814 0.82026 0.82396 1.90697 1.37739 1.28582 1.86652 1.22033 1.03665 0.98842 0.95699 1.22059 1.06683 1.04563 0.90831 1.23551 0.97068 0.92570 0.99808 1.43473 1.35726 1.26891 1.02298 0.68759 1.73438 1.15618 1.16740 1.05681 1.22320 1.00304 1.00409 0.97339 1.23216 0.98953 1.01746 0.95529 1.23060 1.03521 0.89876 1.02923 0.89978 0.90353 0.92265 0.95842 0.95012 0.80121 0.93348 0.75587 0.82303 0.74810 0.89066 0.86793 0.87817 0.87421 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.36 7.06 71.98 0.51 -3.85 16 2 C 0.21 6.84 0.54 3.60 0.00 6.85 16 3 C 0.15 6.53 4.94 86.38 0.43 6.95 16 4 N -0.74 -38.13 4.83 -343.46 -1.66 -39.79 16 5 C -0.23 -14.25 10.47 84.03 0.88 -13.37 16 6 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 7 C -0.06 -4.00 5.50 84.86 0.47 -3.53 16 8 N -0.98 -66.02 13.97 21.65 0.30 -65.72 16 9 Si 0.96 47.92 27.74 68.60 1.90 49.83 16 10 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 12 H -0.26 -12.08 6.52 99.48 0.65 -11.43 16 13 N -0.70 -23.25 4.73 -425.90 -2.01 -25.26 16 14 C 0.60 22.51 7.23 86.75 0.63 23.13 16 15 O -0.56 -24.16 13.16 -3.93 -0.05 -24.21 16 16 C -0.04 -1.38 7.13 42.45 0.30 -1.08 16 17 C -0.21 -5.63 10.81 22.41 0.24 -5.39 16 18 C 0.01 0.24 12.02 83.54 1.00 1.25 16 19 N -0.37 -6.34 6.83 -57.51 -0.39 -6.73 16 20 H 0.46 3.77 8.96 -219.99 -1.97 1.80 16 21 N -0.28 -7.49 11.93 -48.18 -0.57 -8.06 16 22 C -0.18 -5.25 4.86 -10.79 -0.05 -5.30 16 23 C -0.16 -3.35 9.63 30.62 0.29 -3.05 16 24 C -0.16 -3.15 9.72 30.62 0.30 -2.86 16 25 H 0.08 2.05 6.81 -2.39 -0.02 2.03 16 26 H 0.08 1.81 7.00 -2.38 -0.02 1.79 16 27 H 0.06 1.97 6.12 -2.38 -0.01 1.96 16 28 H 0.02 1.19 6.22 -2.39 -0.01 1.18 16 29 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.36 17.71 4.49 -92.71 -0.42 17.30 16 31 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 32 H 0.41 12.25 8.11 -92.70 -0.75 11.49 16 33 H 0.16 4.13 8.06 -2.91 -0.02 4.10 16 34 H 0.24 1.20 8.06 -2.91 -0.02 1.17 16 35 H 0.09 3.08 7.09 -2.38 -0.02 3.06 16 36 H 0.11 2.16 5.87 -2.39 -0.01 2.15 16 37 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.11 1.88 8.14 -2.39 -0.02 1.87 16 39 H 0.10 1.91 7.39 -2.39 -0.02 1.89 16 Total: -1.00 -84.18 318.81 0.42 -83.76 By element: Atomic # 1 Polarization: 38.53 SS G_CDS: -2.09 Total: 36.44 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 5.00 Total: -0.25 kcal Atomic # 7 Polarization: -141.22 SS G_CDS: -4.34 Total: -145.56 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.05 Total: -24.21 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.90 Total: 49.83 kcal Total: -84.18 0.42 -83.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495227502.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.665 kcal (2) G-P(sol) polarization free energy of solvation -84.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds