Wall clock time and date at job start Tue Mar 31 2020 00:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47289 * 2 1 4 4 N 1.32165 * 120.53657 * 263.98291 * 3 2 1 5 5 C 1.31845 * 120.96988 * 180.02562 * 4 3 2 6 6 N 1.31886 * 122.09802 * 359.97438 * 5 4 3 7 7 C 1.32141 * 120.96120 * 359.70584 * 6 5 4 8 8 C 1.39922 * 120.53844 * 84.00003 * 3 2 1 9 9 C 1.47827 * 120.94413 * 359.97438 * 8 3 2 10 10 O 1.21561 * 119.99901 * 354.48105 * 9 8 3 11 11 N 1.34777 * 120.00649 * 174.48474 * 9 8 3 12 12 C 1.46491 * 120.00209 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47330 * 324.99886 * 12 11 9 14 14 C 1.53002 * 109.47577 * 84.99852 * 12 11 9 15 15 C 1.53008 * 109.47202 * 204.99885 * 12 11 9 16 16 N 1.46492 * 109.47028 * 54.99616 * 15 12 11 17 17 C 1.36938 * 120.00080 * 180.02562 * 16 15 12 18 18 H 1.07995 * 119.99952 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00312 * 180.02562 * 17 16 15 20 20 N 1.31628 * 119.99875 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00423 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46826 * 59.99769 * 21 19 17 23 23 H 1.48497 * 109.47576 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46817 * 300.00517 * 21 19 17 25 25 H 1.09001 * 109.47229 * 300.00145 * 1 2 3 26 26 H 1.09002 * 109.46909 * 59.99758 * 1 2 3 27 27 H 1.08997 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47229 * 239.99854 * 2 1 3 29 29 H 1.09002 * 109.47361 * 119.99616 * 2 1 3 30 30 H 1.07999 * 118.95210 * 179.97438 * 5 4 3 31 31 H 1.08002 * 120.53522 * 180.31059 * 7 6 5 32 32 H 0.96998 * 119.99571 * 359.97438 * 11 9 8 33 33 H 1.08992 * 109.47504 * 179.97438 * 14 12 11 34 34 H 1.09003 * 109.47008 * 300.00230 * 14 12 11 35 35 H 1.09001 * 109.46763 * 59.99686 * 14 12 11 36 36 H 1.09002 * 109.47122 * 174.99944 * 15 12 11 37 37 H 1.09004 * 109.46643 * 295.00015 * 15 12 11 38 38 H 0.97006 * 119.99919 * 0.02562 * 16 15 12 39 39 H 0.96997 * 119.99763 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3687 2.0142 -1.1321 5 6 2.8097 3.2566 -1.1419 6 7 2.9362 3.9642 -0.0361 7 6 2.6169 3.4516 1.1392 8 6 2.1506 2.1331 1.1985 9 6 1.7868 1.5132 2.4903 10 8 1.2844 0.4065 2.5132 11 7 2.0119 2.1749 3.6426 12 6 1.6509 1.5607 4.9226 13 1 0.7431 0.9701 4.7990 14 6 2.7896 0.6532 5.3922 15 6 1.4091 2.6557 5.9636 16 7 0.4021 3.5935 5.4609 17 6 0.0213 4.6639 6.2254 18 1 0.4636 4.8170 7.1987 19 6 -0.9332 5.5523 5.7494 20 7 -1.4726 5.3655 4.5633 21 14 -1.4522 7.0128 6.7919 22 1 -0.2706 7.8693 7.0671 23 1 -2.4773 7.8021 6.0629 24 1 -2.0216 6.5278 8.0748 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0757 3.7095 -2.0856 31 1 2.7185 4.0388 2.0399 32 1 2.4131 3.0579 3.6244 33 1 2.5212 0.1966 6.3447 34 1 2.9619 -0.1269 4.6506 35 1 3.6974 1.2438 5.5158 36 1 1.0547 2.2042 6.8902 37 1 2.3405 3.1895 6.1524 38 1 0.0052 3.4562 4.5865 39 1 -2.1399 5.9860 4.2309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498189555.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:33 Heat of formation + Delta-G solvation = 17.533840 kcal Electronic energy + Delta-G solvation = -21780.873841 eV Core-core repulsion = 18530.882664 eV Total energy + Delta-G solvation = -3249.991177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.36241 -39.33214 -36.45837 -34.97679 -33.69985 -33.06862 -31.73483 -30.63166 -29.72601 -25.82669 -25.35445 -24.98850 -22.78676 -22.00097 -21.34384 -20.32469 -17.99448 -17.71214 -17.05124 -16.77385 -15.82578 -15.37808 -14.87098 -14.48391 -14.17693 -14.13871 -13.91832 -13.69306 -13.32037 -13.26809 -12.50765 -12.44770 -12.29489 -12.22793 -11.69477 -11.66542 -11.49445 -11.00277 -10.90969 -10.85252 -10.65174 -10.54060 -10.13025 -9.79620 -9.68751 -9.53305 -9.34395 -8.96886 -8.81159 -7.02647 -5.83271 -3.13734 0.40992 0.95253 2.93410 3.24627 3.40016 3.44787 3.45910 3.74418 3.90842 4.00544 4.29858 4.52583 4.70930 4.83256 5.12646 5.23790 5.29134 5.40754 5.43460 5.48026 5.51507 5.58114 5.75905 5.92712 6.00586 6.01612 6.11000 6.13421 6.26711 6.31872 6.35009 6.44251 6.61779 6.82066 6.84099 7.62797 7.65726 7.92644 8.31860 8.34520 9.46215 10.00944 10.36071 11.38753 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016601 B = 0.005010 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.205325 B = 5587.989804 C = 6349.536244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.080 4.080 3 C 0.235 3.765 4 N -0.527 5.527 5 C 0.312 3.688 6 N -0.526 5.526 7 C 0.191 3.809 8 C -0.238 4.238 9 C 0.569 3.431 10 O -0.529 6.529 11 N -0.703 5.703 12 C 0.134 3.866 13 H 0.090 0.910 14 C -0.158 4.158 15 C 0.143 3.857 16 N -0.732 5.732 17 C -0.246 4.246 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.931 5.931 21 Si 0.908 3.092 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.199 0.801 31 H 0.174 0.826 32 H 0.402 0.598 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.035 0.965 37 H 0.025 0.975 38 H 0.385 0.615 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.019 -8.839 -7.826 15.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.118 4.118 3 C 0.088 3.912 4 N -0.241 5.241 5 C 0.025 3.975 6 N -0.240 5.240 7 C 0.024 3.976 8 C -0.245 4.245 9 C 0.354 3.646 10 O -0.408 6.408 11 N -0.353 5.353 12 C 0.030 3.970 13 H 0.108 0.892 14 C -0.216 4.216 15 C 0.015 3.985 16 N -0.377 5.377 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.129 0.871 30 H 0.216 0.784 31 H 0.191 0.809 32 H 0.238 0.762 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.219 0.781 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.886 -9.076 -8.526 15.900 hybrid contribution -0.508 1.179 1.016 1.637 sum 9.378 -7.897 -7.511 14.378 Atomic orbital electron populations 1.21570 0.93052 1.02390 1.02142 1.20814 0.97542 0.88935 1.04514 1.22006 0.86022 0.96680 0.86474 1.68379 1.13933 1.12217 1.29597 1.25189 0.88661 0.86456 0.97184 1.68461 1.18171 1.38223 0.99143 1.23585 0.86455 0.90838 0.96710 1.21672 1.08406 0.97829 0.96630 1.17681 0.78585 0.85263 0.83060 1.90709 1.43698 1.19399 1.86969 1.45908 1.62809 1.21006 1.05607 1.21307 0.98230 0.95056 0.82391 0.89160 1.22104 0.98435 0.99586 1.01509 1.21003 0.93285 0.89942 0.94259 1.42347 1.46570 1.27954 1.20825 1.19160 1.18017 1.01348 0.99152 0.91145 1.24753 0.99448 0.99450 0.96998 1.69654 1.31476 1.38738 1.18000 0.86263 0.78020 0.82478 0.79357 1.21208 1.21690 1.21228 0.91445 0.93325 0.91763 0.90522 0.87080 0.78426 0.80882 0.76224 0.91475 0.92346 0.92549 0.94686 0.95712 0.78057 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 9.52 37.16 0.35 -1.38 16 2 C -0.08 -1.02 5.49 -27.88 -0.15 -1.18 16 3 C 0.23 3.31 6.12 -81.82 -0.50 2.81 16 4 N -0.53 -7.11 10.36 -10.48 -0.11 -7.22 16 5 C 0.31 3.82 12.27 -92.03 -1.13 2.69 16 6 N -0.53 -7.21 10.42 -14.24 -0.15 -7.36 16 7 C 0.19 2.62 10.80 -16.77 -0.18 2.44 16 8 C -0.24 -3.44 5.91 -104.70 -0.62 -4.05 16 9 C 0.57 8.81 7.70 -12.34 -0.09 8.71 16 10 O -0.53 -8.95 11.71 5.31 0.06 -8.88 16 11 N -0.70 -10.50 4.47 -54.76 -0.24 -10.75 16 12 C 0.13 2.09 2.73 -67.93 -0.19 1.90 16 13 H 0.09 1.58 7.58 -51.93 -0.39 1.18 16 14 C -0.16 -1.97 9.48 37.16 0.35 -1.62 16 15 C 0.14 2.62 5.82 -4.04 -0.02 2.60 16 16 N -0.73 -17.40 5.43 -59.91 -0.33 -17.73 16 17 C -0.25 -6.59 9.99 -15.06 -0.15 -6.74 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 21 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H 0.07 1.04 6.92 -51.93 -0.36 0.68 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.11 1.50 5.92 -51.93 -0.31 1.19 16 30 H 0.20 1.65 8.06 -52.49 -0.42 1.22 16 31 H 0.17 2.12 6.58 -52.49 -0.35 1.78 16 32 H 0.40 5.68 6.77 -40.82 -0.28 5.40 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.39 9.82 7.33 -40.82 -0.30 9.52 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 328.09 15.07 4.94 4.94 Total: -1.00 -31.17 328.09 -7.88 -39.05 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -5.33 Total: 12.03 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -2.43 Total: 5.81 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -0.10 Total: -69.84 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.06 Total: -8.88 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.17 -7.88 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498189555.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.583 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds