Wall clock time and date at job start Tue Mar 31 2020 00:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47289 * 2 1 4 4 N 1.32165 * 120.53657 * 263.98291 * 3 2 1 5 5 C 1.31845 * 120.96988 * 180.02562 * 4 3 2 6 6 N 1.31886 * 122.09802 * 359.97438 * 5 4 3 7 7 C 1.32141 * 120.96120 * 359.70584 * 6 5 4 8 8 C 1.39922 * 120.53844 * 84.00003 * 3 2 1 9 9 C 1.47827 * 120.94413 * 359.97438 * 8 3 2 10 10 O 1.21561 * 119.99901 * 354.48105 * 9 8 3 11 11 N 1.34777 * 120.00649 * 174.48474 * 9 8 3 12 12 C 1.46491 * 120.00209 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47330 * 324.99886 * 12 11 9 14 14 C 1.53002 * 109.47577 * 84.99852 * 12 11 9 15 15 C 1.53008 * 109.47202 * 204.99885 * 12 11 9 16 16 N 1.46492 * 109.47028 * 54.99616 * 15 12 11 17 17 C 1.36938 * 120.00080 * 180.02562 * 16 15 12 18 18 H 1.07995 * 119.99952 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00312 * 180.02562 * 17 16 15 20 20 N 1.31628 * 119.99875 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00423 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46826 * 59.99769 * 21 19 17 23 23 H 1.48497 * 109.47576 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46817 * 300.00517 * 21 19 17 25 25 H 1.09001 * 109.47229 * 300.00145 * 1 2 3 26 26 H 1.09002 * 109.46909 * 59.99758 * 1 2 3 27 27 H 1.08997 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47229 * 239.99854 * 2 1 3 29 29 H 1.09002 * 109.47361 * 119.99616 * 2 1 3 30 30 H 1.07999 * 118.95210 * 179.97438 * 5 4 3 31 31 H 1.08002 * 120.53522 * 180.31059 * 7 6 5 32 32 H 0.96998 * 119.99571 * 359.97438 * 11 9 8 33 33 H 1.08992 * 109.47504 * 179.97438 * 14 12 11 34 34 H 1.09003 * 109.47008 * 300.00230 * 14 12 11 35 35 H 1.09001 * 109.46763 * 59.99686 * 14 12 11 36 36 H 1.09002 * 109.47122 * 174.99944 * 15 12 11 37 37 H 1.09004 * 109.46643 * 295.00015 * 15 12 11 38 38 H 0.97006 * 119.99919 * 0.02562 * 16 15 12 39 39 H 0.96997 * 119.99763 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3687 2.0142 -1.1321 5 6 2.8097 3.2566 -1.1419 6 7 2.9362 3.9642 -0.0361 7 6 2.6169 3.4516 1.1392 8 6 2.1506 2.1331 1.1985 9 6 1.7868 1.5132 2.4903 10 8 1.2844 0.4065 2.5132 11 7 2.0119 2.1749 3.6426 12 6 1.6509 1.5607 4.9226 13 1 0.7431 0.9701 4.7990 14 6 2.7896 0.6532 5.3922 15 6 1.4091 2.6557 5.9636 16 7 0.4021 3.5935 5.4609 17 6 0.0213 4.6639 6.2254 18 1 0.4636 4.8170 7.1987 19 6 -0.9332 5.5523 5.7494 20 7 -1.4726 5.3655 4.5633 21 14 -1.4522 7.0128 6.7919 22 1 -0.2706 7.8693 7.0671 23 1 -2.4773 7.8021 6.0629 24 1 -2.0216 6.5278 8.0748 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0757 3.7095 -2.0856 31 1 2.7185 4.0388 2.0399 32 1 2.4131 3.0579 3.6244 33 1 2.5212 0.1966 6.3447 34 1 2.9619 -0.1269 4.6506 35 1 3.6974 1.2438 5.5158 36 1 1.0547 2.2042 6.8902 37 1 2.3405 3.1895 6.1524 38 1 0.0052 3.4562 4.5865 39 1 -2.1399 5.9860 4.2309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498189555.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:32 Heat of formation + Delta-G solvation = -3.011420 kcal Electronic energy + Delta-G solvation = -21781.764750 eV Core-core repulsion = 18530.882664 eV Total energy + Delta-G solvation = -3250.882086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.43153 -40.53754 -37.83625 -36.15957 -35.34066 -34.19843 -33.12221 -32.14350 -30.99297 -27.41577 -26.50988 -26.04290 -24.52450 -23.12448 -22.58572 -21.58039 -19.37319 -19.03606 -18.53776 -17.85534 -17.08952 -16.69499 -16.49140 -15.74330 -15.53151 -15.27712 -15.14878 -15.09001 -14.91054 -14.36620 -13.94044 -13.62769 -13.56688 -13.49406 -13.06548 -12.76706 -12.74405 -12.62701 -12.53614 -12.19810 -12.02592 -11.87115 -11.70331 -11.68642 -10.97169 -10.78944 -10.69772 -10.40242 -10.04251 -9.00403 -7.94050 -5.23225 -0.64778 -0.12050 1.49186 1.51088 1.57208 1.76540 2.06020 2.56799 2.67557 2.91571 3.03653 3.25685 3.40699 3.59331 3.71306 3.87664 4.05665 4.22333 4.26086 4.33176 4.39696 4.48284 4.53478 4.74037 4.82059 4.88085 4.96560 5.00282 5.10534 5.14172 5.23427 5.30998 5.36284 5.51803 5.57024 5.78206 6.26414 6.45173 6.89527 7.11544 7.34428 8.08297 8.31252 9.28488 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016601 B = 0.005010 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.205325 B = 5587.989804 C = 6349.536244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.076 4.076 3 C 0.228 3.772 4 N -0.534 5.534 5 C 0.314 3.686 6 N -0.539 5.539 7 C 0.190 3.810 8 C -0.252 4.252 9 C 0.568 3.432 10 O -0.547 6.547 11 N -0.701 5.701 12 C 0.143 3.857 13 H 0.067 0.933 14 C -0.146 4.146 15 C 0.143 3.857 16 N -0.743 5.743 17 C -0.243 4.243 18 H 0.080 0.920 19 C -0.072 4.072 20 N -0.968 5.968 21 Si 0.971 3.029 22 H -0.275 1.275 23 H -0.300 1.300 24 H -0.280 1.280 25 H 0.037 0.963 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.237 0.763 31 H 0.183 0.817 32 H 0.406 0.594 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.374 0.626 39 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.310 -8.867 -7.688 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.114 4.114 3 C 0.081 3.919 4 N -0.248 5.248 5 C 0.028 3.972 6 N -0.253 5.253 7 C 0.023 3.977 8 C -0.259 4.259 9 C 0.354 3.646 10 O -0.427 6.427 11 N -0.351 5.351 12 C 0.038 3.962 13 H 0.085 0.915 14 C -0.205 4.205 15 C 0.017 3.983 16 N -0.387 5.387 17 C -0.375 4.375 18 H 0.098 0.902 19 C -0.265 4.265 20 N -0.619 5.619 21 Si 0.800 3.200 22 H -0.201 1.201 23 H -0.227 1.227 24 H -0.206 1.206 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.253 0.747 31 H 0.200 0.800 32 H 0.242 0.758 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.206 0.794 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.223 -9.119 -8.353 16.700 hybrid contribution -0.861 1.144 0.965 1.726 sum 10.362 -7.976 -7.389 15.019 Atomic orbital electron populations 1.21510 0.93323 1.03050 1.00700 1.20791 0.97151 0.88470 1.04973 1.22252 0.85763 0.97247 0.86616 1.68466 1.14365 1.12814 1.29116 1.25982 0.87045 0.85992 0.98136 1.68539 1.18768 1.38559 0.99437 1.23763 0.85965 0.90653 0.97344 1.21609 1.09728 0.98321 0.96281 1.17841 0.78193 0.85086 0.83475 1.90697 1.44531 1.20217 1.87262 1.45868 1.62668 1.21186 1.05422 1.21161 0.98746 0.94245 0.82027 0.91471 1.22011 0.97558 0.98957 1.01975 1.21170 0.92330 0.89811 0.95025 1.42526 1.47581 1.28344 1.20212 1.19591 1.16976 1.01517 0.99389 0.90246 1.25515 1.00339 1.02389 0.98216 1.69819 1.32478 1.39745 1.19825 0.85257 0.77510 0.79467 0.77769 1.20133 1.22708 1.20615 0.94386 0.93078 0.90104 0.88676 0.87883 0.74702 0.80041 0.75757 0.90022 0.92537 0.91049 0.94196 0.94067 0.79425 0.94245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.52 71.98 0.68 -2.61 16 2 C -0.08 -1.90 5.49 29.85 0.16 -1.73 16 3 C 0.23 6.28 6.12 42.92 0.26 6.55 16 4 N -0.53 -13.66 10.36 -187.07 -1.94 -15.59 16 5 C 0.31 7.14 12.27 180.84 2.22 9.36 16 6 N -0.54 -14.15 10.42 -198.97 -2.07 -16.23 16 7 C 0.19 5.13 10.80 85.07 0.92 6.05 16 8 C -0.25 -7.25 5.91 -19.91 -0.12 -7.37 16 9 C 0.57 17.72 7.70 86.78 0.67 18.38 16 10 O -0.55 -18.77 11.71 -3.91 -0.05 -18.82 16 11 N -0.70 -20.78 4.47 -445.42 -1.99 -22.78 16 12 C 0.14 4.33 2.73 45.00 0.12 4.45 16 13 H 0.07 2.37 7.58 -2.39 -0.02 2.35 16 14 C -0.15 -3.38 9.48 71.98 0.68 -2.70 16 15 C 0.14 5.07 5.82 86.38 0.50 5.58 16 16 N -0.74 -35.19 5.43 -343.45 -1.87 -37.05 16 17 C -0.24 -12.86 9.99 84.03 0.84 -12.02 16 18 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 19 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 20 N -0.97 -58.09 13.06 21.65 0.28 -57.81 16 21 Si 0.97 44.99 29.55 68.60 2.03 47.01 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H 0.04 1.19 6.92 -2.39 -0.02 1.18 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 28 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.10 2.76 5.92 -2.39 -0.01 2.74 16 30 H 0.24 3.24 8.06 -2.91 -0.02 3.22 16 31 H 0.18 4.41 6.58 -2.91 -0.02 4.39 16 32 H 0.41 11.31 6.77 -92.71 -0.63 10.68 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.37 19.33 7.33 -92.70 -0.68 18.65 16 39 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -66.17 328.09 1.58 -64.59 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: -0.23 Total: 36.29 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 7.41 Total: 20.40 kcal Atomic # 7 Polarization: -141.87 SS G_CDS: -7.59 Total: -149.46 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.05 Total: -18.82 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -66.17 1.58 -64.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498189555.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.575 kcal (2) G-P(sol) polarization free energy of solvation -66.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds