Wall clock time and date at job start Mon Mar 30 2020 23:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33323 * 126.10669 * 2 1 4 4 C 1.30856 * 109.68461 * 179.97438 * 3 2 1 5 5 N 1.34495 * 109.16687 * 0.02562 * 4 3 2 6 6 H 0.96999 * 126.47976 * 179.73710 * 5 4 3 7 7 C 1.36661 * 126.10863 * 179.97438 * 2 1 3 8 8 C 1.46766 * 126.84417 * 0.02562 * 7 2 1 9 9 O 1.21677 * 120.00126 * 0.02562 * 8 7 2 10 10 N 1.34773 * 120.00161 * 180.02562 * 8 7 2 11 11 C 1.46500 * 120.00304 * 179.97438 * 10 8 7 12 12 H 1.09000 * 112.85004 * 23.80191 * 11 10 8 13 13 C 1.53781 * 113.61851 * 155.00046 * 11 10 8 14 14 C 1.53781 * 87.08178 * 89.11662 * 13 11 10 15 15 H 1.08998 * 113.61234 * 270.88691 * 14 13 11 16 16 C 1.53002 * 113.61158 * 139.98375 * 14 13 11 17 17 N 1.46502 * 109.46861 * 175.00260 * 16 14 13 18 18 C 1.36932 * 119.99865 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00294 * 359.97438 * 18 17 16 20 20 C 1.38818 * 119.99851 * 179.97438 * 18 17 16 21 21 N 1.31612 * 120.00031 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00017 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47304 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47444 * 119.99825 * 22 20 18 25 25 H 1.48502 * 109.46883 * 240.00051 * 22 20 18 26 26 C 1.53776 * 87.08153 * 25.43558 * 14 13 11 27 27 H 1.08997 * 109.47108 * 90.02497 * 1 2 3 28 28 H 1.09008 * 109.47127 * 210.02482 * 1 2 3 29 29 H 1.08995 * 109.47034 * 330.02297 * 1 2 3 30 30 H 1.07997 * 125.41764 * 180.02562 * 4 3 2 31 31 H 0.97002 * 120.00034 * 0.02562 * 10 8 7 32 32 H 1.09000 * 113.61673 * 203.66861 * 13 11 10 33 33 H 1.09001 * 113.60851 * 334.57062 * 13 11 10 34 34 H 1.08993 * 109.46908 * 294.99721 * 16 14 13 35 35 H 1.08996 * 109.47096 * 55.00576 * 16 14 13 36 36 H 0.97007 * 119.99947 * 359.97438 * 17 16 14 37 37 H 0.97006 * 120.00408 * 179.97438 * 21 20 18 38 38 H 1.09000 * 113.61477 * 220.02366 * 26 14 13 39 39 H 1.09004 * 113.61777 * 89.10995 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 0.0006 5 7 3.6122 -0.6362 0.0004 6 1 4.4189 -1.1749 -0.0029 7 6 2.3123 -1.1041 0.0005 8 6 1.8821 -2.5073 0.0006 9 8 0.6963 -2.7800 -0.0003 10 7 2.8004 -3.4937 0.0016 11 6 2.3709 -4.8944 0.0023 12 1 1.3684 -5.0299 -0.4035 13 6 3.4115 -5.8581 -0.5921 14 6 3.9929 -5.9802 0.8263 15 1 4.7559 -5.2349 1.0511 16 6 4.4233 -7.4022 1.1919 17 7 5.0693 -7.3940 2.5068 18 6 5.5397 -8.5616 3.0458 19 1 5.4341 -9.4886 2.5018 20 6 6.1523 -8.5537 4.2914 21 7 6.2815 -7.4240 4.9542 22 14 6.7947 -10.1464 5.0264 23 1 6.5289 -11.2669 4.0889 24 1 8.2569 -10.0304 5.2580 25 1 6.1083 -10.4081 6.3171 26 6 2.5949 -5.6068 1.3467 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3634 -0.8898 0.5143 29 1 -0.3633 0.8901 0.5135 30 1 4.3970 1.3745 0.0011 31 1 3.7457 -3.2763 0.0027 32 1 2.9818 -6.7861 -0.9693 33 1 4.0892 -5.3847 -1.3025 34 1 3.5477 -8.0505 1.2214 35 1 5.1250 -7.7728 0.4447 36 1 5.1638 -6.5614 2.9956 37 1 6.7092 -7.4185 5.8248 38 1 2.6133 -4.9305 2.2013 39 1 1.9419 -6.4661 1.4995 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506907282.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:52 Heat of formation + Delta-G solvation = 47.620896 kcal Electronic energy + Delta-G solvation = -20885.735858 eV Core-core repulsion = 17637.049353 eV Total energy + Delta-G solvation = -3248.686504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.49336 -40.09591 -38.24549 -34.70053 -33.86106 -32.88333 -31.38104 -30.79289 -27.68889 -26.68930 -25.58456 -23.91526 -23.06322 -21.83886 -21.35337 -20.02754 -19.17465 -18.99854 -17.10779 -16.43170 -16.05135 -15.89794 -15.07680 -14.68966 -14.64642 -14.52398 -13.99322 -13.86083 -13.36619 -13.15521 -12.95017 -12.82834 -12.44730 -12.31686 -12.16758 -11.73055 -11.08412 -10.87785 -10.70819 -10.54647 -10.39559 -10.30242 -10.13642 -10.04630 -9.88392 -9.66219 -9.21304 -8.89510 -8.72689 -6.94239 -5.79688 -3.07978 1.03187 2.56284 2.57907 2.90447 3.10503 3.40848 3.46599 3.48790 4.17054 4.50547 4.54058 4.58649 4.74292 4.81304 4.95930 5.02723 5.06345 5.41044 5.54787 5.61794 5.64093 5.74202 5.78340 5.86461 5.87530 5.94541 6.03103 6.15463 6.22751 6.34656 6.35837 6.54187 6.72695 6.86763 6.87079 7.23101 7.62989 7.67603 7.95746 8.39444 9.50634 10.09215 10.43494 11.43358 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027785 B = 0.003083 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.494955 B = 9078.431730 C = 9552.354433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.098 3.902 3 N -0.501 5.501 4 C 0.221 3.779 5 N -0.555 5.555 6 H 0.424 0.576 7 C -0.094 4.094 8 C 0.597 3.403 9 O -0.522 6.522 10 N -0.708 5.708 11 C 0.116 3.884 12 H 0.103 0.897 13 C -0.138 4.138 14 C -0.114 4.114 15 H 0.085 0.915 16 C 0.162 3.838 17 N -0.732 5.732 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 C -0.138 4.138 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.216 0.784 31 H 0.394 0.606 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.021 0.979 35 H 0.018 0.982 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.068 0.932 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.978 14.409 -13.427 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.037 4.037 3 N -0.221 5.221 4 C -0.063 4.063 5 N -0.160 5.160 6 H 0.262 0.738 7 C -0.209 4.209 8 C 0.384 3.616 9 O -0.398 6.398 10 N -0.358 5.358 11 C 0.012 3.988 12 H 0.121 0.879 13 C -0.176 4.176 14 C -0.133 4.133 15 H 0.103 0.897 16 C 0.035 3.965 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 C -0.177 4.177 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.233 0.767 31 H 0.228 0.772 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.036 0.964 36 H 0.216 0.784 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.119 14.795 -13.414 21.202 hybrid contribution 1.984 -1.482 0.741 2.585 sum -5.135 13.313 -12.673 19.084 Atomic orbital electron populations 1.20306 0.86451 1.03793 1.03038 1.21100 0.96970 0.86600 0.99011 1.70157 1.00490 1.30456 1.21014 1.25169 0.97447 0.82058 1.01598 1.43358 1.08053 1.08886 1.55719 0.73765 1.20949 0.84395 0.95087 1.20502 1.16793 0.85923 0.82506 0.76363 1.90818 1.15986 1.82812 1.50178 1.45571 1.09013 1.06011 1.75212 1.21989 0.99346 0.78994 0.98513 0.87864 1.23325 0.97728 0.99354 0.97204 1.22765 0.96429 0.99462 0.94596 0.89651 1.20635 0.95085 0.92143 0.88652 1.42355 1.70008 1.08392 1.16870 1.19290 1.30232 0.87627 0.99841 0.91160 1.24744 1.01863 0.96988 0.97508 1.69665 1.49433 1.24542 1.14665 0.86119 0.78305 0.82803 0.78989 1.20548 1.21879 1.21844 1.23424 0.97471 1.00345 0.96440 0.90743 0.89173 0.91033 0.76739 0.77189 0.88467 0.91362 0.96113 0.96403 0.78388 0.93592 0.91289 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.88 36.00 0.36 -0.50 16 2 C 0.10 1.18 7.15 -82.52 -0.59 0.59 16 3 N -0.50 -5.75 11.20 -10.65 -0.12 -5.87 16 4 C 0.22 1.72 13.01 -90.57 -1.18 0.55 16 5 N -0.56 -4.21 6.07 -10.79 -0.07 -4.27 16 6 H 0.42 1.85 8.32 -40.82 -0.34 1.51 16 7 C -0.09 -1.05 7.08 -82.14 -0.58 -1.63 16 8 C 0.60 7.55 7.79 -12.82 -0.10 7.45 16 9 O -0.52 -8.08 14.42 5.21 0.08 -8.01 16 10 N -0.71 -7.62 5.26 -54.30 -0.29 -7.91 16 11 C 0.12 1.39 4.32 -67.12 -0.29 1.10 16 12 H 0.10 1.30 7.46 -51.93 -0.39 0.91 16 13 C -0.14 -1.55 7.39 -25.92 -0.19 -1.74 16 14 C -0.11 -1.67 3.63 -89.81 -0.33 -1.99 16 15 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 16 C 0.16 3.13 6.10 -4.04 -0.02 3.11 16 17 N -0.73 -18.30 5.60 -59.91 -0.34 -18.64 16 18 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 22 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 26 C -0.14 -1.97 7.43 -25.92 -0.19 -2.16 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.07 6.48 -51.92 -0.34 0.74 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.22 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.39 3.31 7.94 -40.82 -0.32 2.98 16 32 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.02 0.41 7.84 -51.93 -0.41 0.00 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.38 10.05 7.67 -40.82 -0.31 9.74 16 37 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.09 1.36 7.90 -51.93 -0.41 0.95 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -34.92 330.50 -8.86 -43.78 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.44 Total: 8.62 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -3.36 Total: -2.58 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -0.08 Total: -64.12 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.08 Total: -8.01 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.92 -8.86 -43.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506907282.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.403 kcal (2) G-P(sol) polarization free energy of solvation -34.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds