Wall clock time and date at job start Mon Mar 30 2020 23:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33323 * 126.10669 * 2 1 4 4 C 1.30856 * 109.68461 * 179.97438 * 3 2 1 5 5 N 1.34495 * 109.16687 * 0.02562 * 4 3 2 6 6 H 0.96999 * 126.47976 * 179.73710 * 5 4 3 7 7 C 1.36661 * 126.10863 * 179.97438 * 2 1 3 8 8 C 1.46766 * 126.84417 * 0.02562 * 7 2 1 9 9 O 1.21677 * 120.00126 * 0.02562 * 8 7 2 10 10 N 1.34773 * 120.00161 * 180.02562 * 8 7 2 11 11 C 1.46500 * 120.00304 * 179.97438 * 10 8 7 12 12 H 1.09000 * 112.85004 * 23.80191 * 11 10 8 13 13 C 1.53781 * 113.61851 * 155.00046 * 11 10 8 14 14 C 1.53781 * 87.08178 * 89.11662 * 13 11 10 15 15 H 1.08998 * 113.61234 * 270.88691 * 14 13 11 16 16 C 1.53002 * 113.61158 * 139.98375 * 14 13 11 17 17 N 1.46502 * 109.46861 * 175.00260 * 16 14 13 18 18 C 1.36932 * 119.99865 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00294 * 359.97438 * 18 17 16 20 20 C 1.38818 * 119.99851 * 179.97438 * 18 17 16 21 21 N 1.31612 * 120.00031 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00017 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47304 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47444 * 119.99825 * 22 20 18 25 25 H 1.48502 * 109.46883 * 240.00051 * 22 20 18 26 26 C 1.53776 * 87.08153 * 25.43558 * 14 13 11 27 27 H 1.08997 * 109.47108 * 90.02497 * 1 2 3 28 28 H 1.09008 * 109.47127 * 210.02482 * 1 2 3 29 29 H 1.08995 * 109.47034 * 330.02297 * 1 2 3 30 30 H 1.07997 * 125.41764 * 180.02562 * 4 3 2 31 31 H 0.97002 * 120.00034 * 0.02562 * 10 8 7 32 32 H 1.09000 * 113.61673 * 203.66861 * 13 11 10 33 33 H 1.09001 * 113.60851 * 334.57062 * 13 11 10 34 34 H 1.08993 * 109.46908 * 294.99721 * 16 14 13 35 35 H 1.08996 * 109.47096 * 55.00576 * 16 14 13 36 36 H 0.97007 * 119.99947 * 359.97438 * 17 16 14 37 37 H 0.97006 * 120.00408 * 179.97438 * 21 20 18 38 38 H 1.09000 * 113.61477 * 220.02366 * 26 14 13 39 39 H 1.09004 * 113.61777 * 89.10995 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 0.0006 5 7 3.6122 -0.6362 0.0004 6 1 4.4189 -1.1749 -0.0029 7 6 2.3123 -1.1041 0.0005 8 6 1.8821 -2.5073 0.0006 9 8 0.6963 -2.7800 -0.0003 10 7 2.8004 -3.4937 0.0016 11 6 2.3709 -4.8944 0.0023 12 1 1.3684 -5.0299 -0.4035 13 6 3.4115 -5.8581 -0.5921 14 6 3.9929 -5.9802 0.8263 15 1 4.7559 -5.2349 1.0511 16 6 4.4233 -7.4022 1.1919 17 7 5.0693 -7.3940 2.5068 18 6 5.5397 -8.5616 3.0458 19 1 5.4341 -9.4886 2.5018 20 6 6.1523 -8.5537 4.2914 21 7 6.2815 -7.4240 4.9542 22 14 6.7947 -10.1464 5.0264 23 1 6.5289 -11.2669 4.0889 24 1 8.2569 -10.0304 5.2580 25 1 6.1083 -10.4081 6.3171 26 6 2.5949 -5.6068 1.3467 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3634 -0.8898 0.5143 29 1 -0.3633 0.8901 0.5135 30 1 4.3970 1.3745 0.0011 31 1 3.7457 -3.2763 0.0027 32 1 2.9818 -6.7861 -0.9693 33 1 4.0892 -5.3847 -1.3025 34 1 3.5477 -8.0505 1.2214 35 1 5.1250 -7.7728 0.4447 36 1 5.1638 -6.5614 2.9956 37 1 6.7092 -7.4185 5.8248 38 1 2.6133 -4.9305 2.2013 39 1 1.9419 -6.4661 1.4995 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506907282.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:51 Heat of formation + Delta-G solvation = 22.788291 kcal Electronic energy + Delta-G solvation = -20886.812680 eV Core-core repulsion = 17637.049353 eV Total energy + Delta-G solvation = -3249.763327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.23387 -41.12412 -39.34019 -36.38335 -34.93824 -33.89732 -32.84246 -32.02150 -28.84531 -27.99299 -26.65273 -25.41611 -24.20623 -23.05740 -22.37316 -20.89025 -20.29188 -19.79927 -19.07471 -17.33907 -16.99882 -16.74449 -16.70710 -15.92839 -15.82503 -15.41768 -15.32112 -15.12909 -14.95711 -14.42513 -13.94877 -13.77980 -13.71494 -13.41046 -13.15315 -13.09884 -12.93789 -12.73958 -12.13818 -11.95015 -11.78479 -11.54656 -11.38953 -11.17972 -11.04424 -10.96020 -10.87493 -10.21024 -9.52947 -8.99038 -7.96752 -5.24712 0.22065 1.46316 1.47066 1.57044 1.81544 1.85007 2.09907 2.20062 2.54919 3.36704 3.52594 3.55114 3.57716 3.77564 3.91019 3.92949 4.10011 4.27826 4.31700 4.53622 4.67163 4.75024 4.80204 4.83678 4.84078 4.90223 4.96367 4.97184 5.05786 5.13399 5.24162 5.32208 5.48226 5.53410 5.62774 6.26383 6.28900 6.40511 6.89943 7.03611 7.32519 8.10411 8.32387 9.27022 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027785 B = 0.003083 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.494955 B = 9078.431730 C = 9552.354433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.078 3.922 3 N -0.537 5.537 4 C 0.242 3.758 5 N -0.542 5.542 6 H 0.440 0.560 7 C -0.111 4.111 8 C 0.596 3.404 9 O -0.558 6.558 10 N -0.697 5.697 11 C 0.127 3.873 12 H 0.100 0.900 13 C -0.115 4.115 14 C -0.111 4.111 15 H 0.086 0.914 16 C 0.159 3.841 17 N -0.746 5.746 18 C -0.244 4.244 19 H 0.075 0.925 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.972 3.028 23 H -0.266 1.266 24 H -0.292 1.292 25 H -0.295 1.295 26 C -0.143 4.143 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.263 0.737 31 H 0.408 0.592 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.020 0.980 35 H 0.023 0.977 36 H 0.373 0.627 37 H 0.251 0.749 38 H 0.049 0.951 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.829 14.568 -14.819 21.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.057 4.057 3 N -0.258 5.258 4 C -0.043 4.043 5 N -0.148 5.148 6 H 0.282 0.718 7 C -0.227 4.227 8 C 0.384 3.616 9 O -0.436 6.436 10 N -0.348 5.348 11 C 0.022 3.978 12 H 0.118 0.882 13 C -0.153 4.153 14 C -0.130 4.130 15 H 0.104 0.896 16 C 0.033 3.967 17 N -0.388 5.388 18 C -0.376 4.376 19 H 0.093 0.907 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.801 3.199 23 H -0.190 1.190 24 H -0.219 1.219 25 H -0.222 1.222 26 C -0.182 4.182 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.278 0.722 31 H 0.244 0.756 32 H 0.127 0.873 33 H 0.111 0.889 34 H 0.038 0.962 35 H 0.040 0.960 36 H 0.204 0.796 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.940 14.925 -14.852 21.877 hybrid contribution 1.632 -1.485 1.145 2.486 sum -4.308 13.439 -13.708 19.674 Atomic orbital electron populations 1.20255 0.86579 1.03300 1.03208 1.21336 0.97540 0.87371 0.99428 1.70155 1.02033 1.30702 1.22866 1.26099 0.97594 0.82387 0.98177 1.43289 1.07454 1.09115 1.54915 0.71840 1.20694 0.85901 0.94112 1.21994 1.16997 0.85595 0.83277 0.75710 1.90797 1.17482 1.83450 1.51899 1.45443 1.09577 1.05282 1.74479 1.21814 0.99705 0.79547 0.96768 0.88191 1.23234 0.97050 0.99665 0.95375 1.22697 0.96354 0.96558 0.97390 0.89555 1.20833 0.94497 0.95211 0.86143 1.42591 1.70310 1.07171 1.18725 1.19694 1.29219 0.88743 0.99932 0.90715 1.25557 1.02992 1.00101 0.98268 1.69813 1.50830 1.26564 1.14886 0.85091 0.77277 0.79534 0.77982 1.19026 1.21910 1.22195 1.23435 0.97409 1.00238 0.97132 0.90263 0.90699 0.90365 0.72154 0.75607 0.87344 0.88892 0.96197 0.95953 0.79559 0.94059 0.93170 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 9.88 71.23 0.70 -0.99 16 2 C 0.08 1.86 7.15 41.96 0.30 2.16 16 3 N -0.54 -11.56 11.20 -187.60 -2.10 -13.66 16 4 C 0.24 3.07 13.01 180.33 2.35 5.42 16 5 N -0.54 -6.92 6.07 -188.04 -1.14 -8.06 16 6 H 0.44 2.54 8.32 -92.71 -0.77 1.77 16 7 C -0.11 -2.39 7.08 40.01 0.28 -2.10 16 8 C 0.60 14.75 7.79 86.47 0.67 15.43 16 9 O -0.56 -17.52 14.42 -4.27 -0.06 -17.58 16 10 N -0.70 -13.99 5.26 -443.92 -2.33 -16.32 16 11 C 0.13 2.85 4.32 45.52 0.20 3.04 16 12 H 0.10 2.40 7.46 -2.39 -0.02 2.38 16 13 C -0.11 -2.26 7.39 31.12 0.23 -2.03 16 14 C -0.11 -3.11 3.63 -10.27 -0.04 -3.14 16 15 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 16 C 0.16 5.99 6.10 86.38 0.53 6.52 16 17 N -0.75 -37.23 5.60 -343.45 -1.92 -39.16 16 18 C -0.24 -13.55 9.99 84.04 0.84 -12.71 16 19 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 20 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 21 N -0.97 -59.10 13.06 21.65 0.28 -58.81 16 22 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 26 C -0.14 -4.04 7.43 31.12 0.23 -3.80 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 1.88 6.48 -2.38 -0.02 1.87 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.26 0.49 8.06 -2.91 -0.02 0.47 16 31 H 0.41 5.90 7.94 -92.71 -0.74 5.17 16 32 H 0.11 1.97 8.10 -2.39 -0.02 1.95 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.02 0.76 7.84 -2.39 -0.02 0.75 16 35 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.37 19.81 7.67 -92.70 -0.71 19.10 16 37 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.09 2.54 7.90 -2.38 -0.02 2.52 16 Total: -1.00 -76.26 330.50 0.38 -75.87 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: -1.12 Total: 25.96 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 6.76 Total: 3.83 kcal Atomic # 7 Polarization: -128.79 SS G_CDS: -7.22 Total: -136.01 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.06 Total: -17.58 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -76.26 0.38 -75.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506907282.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.661 kcal (2) G-P(sol) polarization free energy of solvation -76.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds