Wall clock time and date at job start Tue Mar 31 2020 01:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47135 * 2 1 4 4 N 1.46505 * 109.46707 * 119.99865 * 2 1 3 5 5 C 1.38306 * 119.99666 * 155.00130 * 4 2 1 6 6 N 1.32685 * 120.28089 * 354.61494 * 5 4 2 7 7 N 1.28276 * 122.18384 * 180.02562 * 6 5 4 8 8 C 1.31882 * 122.65766 * 359.97438 * 7 6 5 9 9 C 1.38473 * 120.18924 * 0.02562 * 8 7 6 10 10 C 1.40065 * 117.90507 * 359.97438 * 9 8 7 11 11 C 1.47725 * 121.19239 * 180.02562 * 10 9 8 12 12 O 1.21561 * 120.00246 * 131.23612 * 11 10 9 13 13 N 1.34780 * 119.99828 * 311.24254 * 11 10 9 14 14 C 1.46504 * 119.99948 * 4.64578 * 13 11 10 15 15 C 1.46497 * 120.00159 * 184.65028 * 13 11 10 16 16 C 1.50697 * 109.47652 * 89.99585 * 15 13 11 17 17 H 1.08010 * 119.99511 * 0.02562 * 16 15 13 18 18 C 1.37877 * 120.00670 * 180.02562 * 16 15 13 19 19 N 1.31519 * 119.99554 * 0.02562 * 18 16 15 20 20 Si 1.86789 * 120.00260 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47458 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47410 * 120.00035 * 20 18 16 23 23 H 1.48497 * 109.47281 * 239.99844 * 20 18 16 24 24 H 1.09001 * 109.46924 * 300.00267 * 1 2 3 25 25 H 1.09005 * 109.46749 * 59.99813 * 1 2 3 26 26 H 1.08998 * 109.47026 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46924 * 239.99733 * 2 1 3 28 28 H 1.08997 * 109.46974 * 59.99994 * 3 2 1 29 29 H 1.08998 * 109.46922 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46940 * 299.99702 * 3 2 1 31 31 H 0.97001 * 120.00022 * 334.99896 * 4 2 1 32 32 H 1.07999 * 119.90932 * 179.97438 * 8 7 6 33 33 H 1.07999 * 121.05186 * 180.02562 * 9 8 7 34 34 H 1.09002 * 109.46921 * 84.98589 * 14 13 11 35 35 H 1.08996 * 109.46692 * 204.98065 * 14 13 11 36 36 H 1.08996 * 109.46834 * 324.98041 * 14 13 11 37 37 H 1.08998 * 109.47195 * 209.99787 * 15 13 11 38 38 H 1.09006 * 109.46848 * 329.99686 * 15 13 11 39 39 H 0.97002 * 119.99773 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 3.2723 -1.2741 1.1944 6 7 3.9941 -1.3052 0.0816 7 7 5.1606 -1.8371 0.0384 8 6 5.7297 -2.3908 1.0915 9 6 5.0681 -2.4161 2.3077 10 6 3.7933 -1.8396 2.3726 11 6 3.0231 -1.8259 3.6332 12 8 2.5116 -0.7939 4.0217 13 7 2.8878 -2.9576 4.3525 14 6 3.5878 -4.1764 3.9392 15 6 2.0406 -2.9690 5.5477 16 6 0.6331 -3.3447 5.1622 17 1 0.3936 -3.5545 4.1301 18 6 -0.3490 -3.4207 6.1270 19 7 -0.0575 -3.1647 7.3836 20 14 -2.0935 -3.8871 5.6492 21 1 -2.1594 -4.1230 4.1846 22 1 -2.4898 -5.1243 6.3686 23 1 -3.0185 -2.7844 6.0146 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.4622 -0.7386 1.9895 32 1 6.7141 -2.8264 1.0049 33 1 5.5212 -2.8655 3.1790 34 1 4.6015 -4.1667 4.3398 35 1 3.0551 -5.0479 4.3197 36 1 3.6274 -4.2212 2.8509 37 1 2.4284 -3.6962 6.2610 38 1 2.0406 -1.9783 6.0024 39 1 -0.7483 -3.2185 8.0624 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548631027.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:43 Heat of formation + Delta-G solvation = 24.499487 kcal Electronic energy + Delta-G solvation = -22071.125473 eV Core-core repulsion = 18821.436349 eV Total energy + Delta-G solvation = -3249.689124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.02341 -38.81199 -37.26360 -35.06212 -33.39382 -32.83043 -32.37895 -29.45853 -27.93687 -27.21054 -26.39941 -24.97636 -23.71505 -22.72369 -20.99098 -19.40990 -17.72290 -17.46300 -16.86340 -16.63452 -15.73789 -15.13704 -14.98596 -14.82514 -14.38284 -14.29021 -14.19293 -13.77826 -13.13900 -12.86270 -12.40167 -12.29751 -12.26754 -12.18567 -11.96676 -11.62020 -11.35227 -11.05562 -11.00817 -10.96967 -10.73261 -10.62043 -10.29035 -10.03362 -9.84738 -9.73800 -9.05862 -8.55431 -7.96243 -7.83309 -6.16399 -4.22280 0.72075 1.30070 3.06191 3.20735 3.21587 3.29854 3.33187 3.63467 3.86974 4.33184 4.36729 4.70965 4.72622 4.81568 4.92320 5.07488 5.12196 5.18682 5.28445 5.53267 5.58214 5.61572 5.72835 5.76742 5.79290 5.83509 5.91819 6.07677 6.09996 6.22860 6.29527 6.86083 7.15849 7.26361 7.34133 7.58588 7.78815 8.08060 8.15133 8.67278 8.85433 8.95254 9.43461 10.91686 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015925 B = 0.006045 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.856995 B = 4630.485654 C = 5825.166005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 C -0.162 4.162 4 N -0.692 5.692 5 C 0.382 3.618 6 N -0.310 5.310 7 N -0.195 5.195 8 C -0.030 4.030 9 C -0.051 4.051 10 C -0.180 4.180 11 C 0.554 3.446 12 O -0.532 6.532 13 N -0.587 5.587 14 C 0.078 3.922 15 C 0.243 3.757 16 C -0.531 4.531 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.898 3.102 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.421 0.579 32 H 0.170 0.830 33 H 0.152 0.848 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.037 0.963 38 H 0.048 0.952 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.563 1.346 -11.972 14.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 C -0.221 4.221 4 N -0.326 5.326 5 C 0.139 3.861 6 N -0.165 5.165 7 N -0.038 5.038 8 C -0.198 4.198 9 C -0.080 4.080 10 C -0.200 4.200 11 C 0.339 3.661 12 O -0.410 6.410 13 N -0.318 5.318 14 C -0.066 4.066 15 C 0.124 3.876 16 C -0.570 4.570 17 H 0.076 0.924 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.261 0.739 32 H 0.187 0.813 33 H 0.169 0.831 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.165 2.380 -13.285 15.281 hybrid contribution -1.182 -0.829 1.801 2.308 sum 5.983 1.551 -11.484 13.042 Atomic orbital electron populations 1.22096 0.94156 1.02901 1.02960 1.21004 0.93996 0.92919 0.88272 1.22196 1.01903 0.95981 1.01974 1.44766 1.13706 1.56511 1.17618 1.19894 0.88012 0.88304 0.89905 1.73092 1.02156 1.20139 1.21069 1.72548 1.02249 1.02495 1.26521 1.23784 1.02547 1.03266 0.90224 1.22498 0.92646 0.93283 0.99602 1.20871 0.97881 1.05684 0.95576 1.17781 0.80824 0.84570 0.82913 1.90775 1.49046 1.31078 1.70096 1.48126 1.46513 1.08549 1.28583 1.21840 0.96319 0.88853 0.99576 1.19417 0.88359 0.99199 0.80583 1.21423 0.93639 1.47524 0.94422 0.92399 1.24930 0.99133 0.95083 0.94801 1.69938 1.33933 1.48638 1.00497 0.86439 0.84210 0.78162 0.78612 1.19803 1.20827 1.20771 0.91757 0.90873 0.91874 0.89029 0.92346 0.92286 0.91743 0.73899 0.81285 0.83050 0.93273 0.90191 0.92453 0.94546 0.93400 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.38 37.16 0.35 -1.49 16 2 C 0.14 1.86 3.25 -67.92 -0.22 1.64 16 3 C -0.16 -1.96 9.50 37.16 0.35 -1.61 16 4 N -0.69 -11.19 5.06 -53.61 -0.27 -11.46 16 5 C 0.38 6.46 7.54 -154.86 -1.17 5.29 16 6 N -0.31 -5.09 10.34 31.37 0.32 -4.77 16 7 N -0.20 -2.96 11.47 30.51 0.35 -2.61 16 8 C -0.03 -0.36 11.29 -17.44 -0.20 -0.56 16 9 C -0.05 -0.67 7.98 -38.81 -0.31 -0.98 16 10 C -0.18 -3.04 4.93 -104.41 -0.52 -3.55 16 11 C 0.55 11.28 6.72 -12.38 -0.08 11.19 16 12 O -0.53 -12.70 15.28 5.31 0.08 -12.62 16 13 N -0.59 -11.91 2.86 -184.13 -0.53 -12.44 16 14 C 0.08 1.19 9.09 59.85 0.54 1.73 16 15 C 0.24 6.06 5.17 -5.20 -0.03 6.04 16 16 C -0.53 -14.40 9.39 -34.44 -0.32 -14.72 16 17 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -25.60 13.29 55.43 0.74 -24.87 16 20 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 1.21 7.47 -51.93 -0.39 0.82 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.42 7.56 6.69 -40.82 -0.27 7.29 16 32 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.15 1.58 6.44 -52.49 -0.34 1.24 16 34 H 0.05 0.60 7.14 -51.93 -0.37 0.22 16 35 H 0.08 1.24 8.03 -51.93 -0.42 0.82 16 36 H 0.06 0.79 6.26 -51.93 -0.33 0.47 16 37 H 0.04 0.91 8.07 -51.93 -0.42 0.50 16 38 H 0.05 1.35 7.36 -51.93 -0.38 0.96 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 329.35 15.07 4.96 4.96 Total: -1.00 -31.86 329.35 -6.47 -38.34 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.42 Total: 4.76 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -1.69 Total: 4.61 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.61 Total: -56.14 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.86 -6.47 -38.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548631027.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.838 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds