Wall clock time and date at job start Tue Mar 31 2020 01:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47135 * 2 1 4 4 N 1.46505 * 109.46707 * 119.99865 * 2 1 3 5 5 C 1.38306 * 119.99666 * 155.00130 * 4 2 1 6 6 N 1.32685 * 120.28089 * 354.61494 * 5 4 2 7 7 N 1.28276 * 122.18384 * 180.02562 * 6 5 4 8 8 C 1.31882 * 122.65766 * 359.97438 * 7 6 5 9 9 C 1.38473 * 120.18924 * 0.02562 * 8 7 6 10 10 C 1.40065 * 117.90507 * 359.97438 * 9 8 7 11 11 C 1.47725 * 121.19239 * 180.02562 * 10 9 8 12 12 O 1.21561 * 120.00246 * 131.23612 * 11 10 9 13 13 N 1.34780 * 119.99828 * 311.24254 * 11 10 9 14 14 C 1.46504 * 119.99948 * 4.64578 * 13 11 10 15 15 C 1.46497 * 120.00159 * 184.65028 * 13 11 10 16 16 C 1.50697 * 109.47652 * 89.99585 * 15 13 11 17 17 H 1.08010 * 119.99511 * 0.02562 * 16 15 13 18 18 C 1.37877 * 120.00670 * 180.02562 * 16 15 13 19 19 N 1.31519 * 119.99554 * 0.02562 * 18 16 15 20 20 Si 1.86789 * 120.00260 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47458 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47410 * 120.00035 * 20 18 16 23 23 H 1.48497 * 109.47281 * 239.99844 * 20 18 16 24 24 H 1.09001 * 109.46924 * 300.00267 * 1 2 3 25 25 H 1.09005 * 109.46749 * 59.99813 * 1 2 3 26 26 H 1.08998 * 109.47026 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46924 * 239.99733 * 2 1 3 28 28 H 1.08997 * 109.46974 * 59.99994 * 3 2 1 29 29 H 1.08998 * 109.46922 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46940 * 299.99702 * 3 2 1 31 31 H 0.97001 * 120.00022 * 334.99896 * 4 2 1 32 32 H 1.07999 * 119.90932 * 179.97438 * 8 7 6 33 33 H 1.07999 * 121.05186 * 180.02562 * 9 8 7 34 34 H 1.09002 * 109.46921 * 84.98589 * 14 13 11 35 35 H 1.08996 * 109.46692 * 204.98065 * 14 13 11 36 36 H 1.08996 * 109.46834 * 324.98041 * 14 13 11 37 37 H 1.08998 * 109.47195 * 209.99787 * 15 13 11 38 38 H 1.09006 * 109.46848 * 329.99686 * 15 13 11 39 39 H 0.97002 * 119.99773 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 3.2723 -1.2741 1.1944 6 7 3.9941 -1.3052 0.0816 7 7 5.1606 -1.8371 0.0384 8 6 5.7297 -2.3908 1.0915 9 6 5.0681 -2.4161 2.3077 10 6 3.7933 -1.8396 2.3726 11 6 3.0231 -1.8259 3.6332 12 8 2.5116 -0.7939 4.0217 13 7 2.8878 -2.9576 4.3525 14 6 3.5878 -4.1764 3.9392 15 6 2.0406 -2.9690 5.5477 16 6 0.6331 -3.3447 5.1622 17 1 0.3936 -3.5545 4.1301 18 6 -0.3490 -3.4207 6.1270 19 7 -0.0575 -3.1647 7.3836 20 14 -2.0935 -3.8871 5.6492 21 1 -2.1594 -4.1230 4.1846 22 1 -2.4898 -5.1243 6.3686 23 1 -3.0185 -2.7844 6.0146 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.4622 -0.7386 1.9895 32 1 6.7141 -2.8264 1.0049 33 1 5.5212 -2.8655 3.1790 34 1 4.6015 -4.1667 4.3398 35 1 3.0551 -5.0479 4.3197 36 1 3.6274 -4.2212 2.8509 37 1 2.4284 -3.6962 6.2610 38 1 2.0406 -1.9783 6.0024 39 1 -0.7483 -3.2185 8.0624 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548631027.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:43 Heat of formation + Delta-G solvation = 3.175347 kcal Electronic energy + Delta-G solvation = -22072.050157 eV Core-core repulsion = 18821.436349 eV Total energy + Delta-G solvation = -3250.613808 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.24076 -40.34196 -38.36466 -36.73127 -35.02133 -34.19634 -33.74502 -30.67910 -29.71842 -28.17190 -27.77493 -26.48102 -24.99439 -24.34213 -22.07048 -20.90286 -18.91924 -18.69392 -18.65657 -18.25349 -17.32217 -16.58357 -16.24964 -16.11988 -15.83818 -15.66138 -15.40723 -14.92392 -14.47759 -14.22002 -14.11342 -13.75130 -13.50683 -13.20595 -13.17362 -13.12119 -12.87783 -12.64158 -12.61264 -12.26978 -12.13001 -12.01893 -11.75036 -11.69778 -11.35734 -11.07014 -10.67371 -10.44675 -9.56886 -9.10436 -8.26284 -6.40864 -0.47107 0.20269 1.35137 1.36810 1.47772 1.60002 2.02139 2.15131 2.37069 2.66091 3.04323 3.25439 3.40056 3.59072 3.81115 3.91822 4.03263 4.10458 4.28613 4.30825 4.54358 4.60488 4.68503 4.69880 4.80656 4.85629 4.87369 4.93680 4.98014 5.15167 5.19012 5.25914 5.29565 5.47594 5.74338 6.00062 6.03110 6.28989 6.54400 6.67767 7.12860 7.32114 7.81089 8.81138 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015925 B = 0.006045 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.856995 B = 4630.485654 C = 5825.166005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.139 3.861 3 C -0.154 4.154 4 N -0.702 5.702 5 C 0.369 3.631 6 N -0.324 5.324 7 N -0.214 5.214 8 C -0.012 4.012 9 C -0.029 4.029 10 C -0.206 4.206 11 C 0.554 3.446 12 O -0.580 6.580 13 N -0.592 5.592 14 C 0.073 3.927 15 C 0.258 3.742 16 C -0.543 4.543 17 H 0.052 0.948 18 C 0.013 3.987 19 N -0.925 5.925 20 Si 0.964 3.036 21 H -0.268 1.268 22 H -0.270 1.270 23 H -0.281 1.281 24 H 0.054 0.946 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.408 0.592 32 H 0.219 0.781 33 H 0.185 0.815 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.006 0.994 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.607 0.115 -13.549 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 C -0.213 4.213 4 N -0.334 5.334 5 C 0.126 3.874 6 N -0.177 5.177 7 N -0.055 5.055 8 C -0.181 4.181 9 C -0.058 4.058 10 C -0.225 4.225 11 C 0.341 3.659 12 O -0.461 6.461 13 N -0.322 5.322 14 C -0.069 4.069 15 C 0.137 3.863 16 C -0.582 4.582 17 H 0.070 0.930 18 C -0.187 4.187 19 N -0.564 5.564 20 Si 0.789 3.211 21 H -0.193 1.193 22 H -0.195 1.195 23 H -0.207 1.207 24 H 0.073 0.927 25 H 0.120 0.880 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.246 0.754 32 H 0.236 0.764 33 H 0.202 0.798 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.024 0.976 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.243 1.124 -14.915 17.078 hybrid contribution -1.373 -0.468 2.287 2.708 sum 6.869 0.657 -12.629 14.391 Atomic orbital electron populations 1.22077 0.92875 1.02704 1.03871 1.21187 0.95032 0.93040 0.87180 1.22135 1.00721 0.95623 1.02809 1.44963 1.13676 1.56926 1.17856 1.20065 0.88398 0.88744 0.90226 1.73110 1.02838 1.21000 1.20780 1.72486 1.01963 1.03051 1.28024 1.24498 1.03718 1.01245 0.88657 1.22915 0.90671 0.91081 1.01139 1.20640 0.99474 1.08657 0.93738 1.18254 0.80334 0.83673 0.83611 1.90736 1.51142 1.32853 1.71420 1.48074 1.46283 1.10456 1.27393 1.22139 0.97624 0.86283 1.00880 1.18894 0.88679 0.96391 0.82302 1.21665 0.94964 1.47417 0.94154 0.92969 1.25783 1.03269 0.94920 0.94721 1.70044 1.35371 1.49500 1.01506 0.85415 0.79054 0.78120 0.78529 1.19269 1.19535 1.20658 0.92660 0.88050 0.92605 0.89059 0.93339 0.93953 0.88979 0.75421 0.76414 0.79817 0.89305 0.90719 0.90671 0.95000 0.97620 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.38 71.98 0.68 -2.83 16 2 C 0.14 3.64 3.25 44.99 0.15 3.79 16 3 C -0.15 -3.72 9.50 71.98 0.68 -3.04 16 4 N -0.70 -23.34 5.06 -323.53 -1.64 -24.97 16 5 C 0.37 12.42 7.54 133.60 1.01 13.43 16 6 N -0.32 -10.30 10.34 -54.67 -0.57 -10.86 16 7 N -0.21 -5.93 11.47 -57.37 -0.66 -6.59 16 8 C -0.01 -0.25 11.29 84.74 0.96 0.71 16 9 C -0.03 -0.66 7.98 22.77 0.18 -0.47 16 10 C -0.21 -6.75 4.93 -19.73 -0.10 -6.85 16 11 C 0.55 22.91 6.72 86.75 0.58 23.49 16 12 O -0.58 -29.10 15.28 -3.91 -0.06 -29.16 16 13 N -0.59 -24.10 2.86 -854.72 -2.44 -26.54 16 14 C 0.07 2.05 9.09 127.77 1.16 3.21 16 15 C 0.26 13.30 5.17 85.63 0.44 13.74 16 16 C -0.54 -30.11 9.39 25.60 0.24 -29.87 16 17 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 18 C 0.01 0.70 5.46 84.65 0.46 1.17 16 19 N -0.92 -54.15 13.29 21.45 0.28 -53.87 16 20 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.09 2.38 7.47 -2.39 -0.02 2.37 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.41 15.48 6.69 -92.71 -0.62 14.86 16 32 H 0.22 2.21 8.06 -2.91 -0.02 2.18 16 33 H 0.18 2.92 6.44 -2.91 -0.02 2.90 16 34 H 0.09 1.81 7.14 -2.39 -0.02 1.79 16 35 H 0.07 2.20 8.03 -2.39 -0.02 2.18 16 36 H 0.07 1.86 6.26 -2.39 -0.01 1.85 16 37 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 38 H 0.01 0.34 7.36 -2.38 -0.02 0.32 16 39 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -72.57 329.35 3.84 -68.73 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.44 Total: 21.18 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 6.44 Total: 16.48 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -5.02 Total: -122.84 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.06 Total: -29.16 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -72.57 3.84 -68.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548631027.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.910 kcal (2) G-P(sol) polarization free energy of solvation -72.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds