Wall clock time and date at job start Tue Mar 31 2020 00:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21543 * 119.99852 * 0.02562 * 14 13 3 16 16 C 1.47929 * 119.99906 * 179.97438 * 14 13 3 17 17 C 1.33750 * 125.55213 * 180.02562 * 16 14 13 18 18 C 1.50985 * 130.87107 * 358.98949 * 17 16 14 19 19 C 1.53845 * 106.39787 * 204.20990 * 18 17 16 20 20 C 1.52636 * 110.21300 * 306.83708 * 19 18 17 21 21 N 1.46650 * 111.72489 * 61.07475 * 20 19 18 22 22 C 1.30354 * 119.16809 * 326.10330 * 21 20 19 23 23 N 1.37109 * 131.39650 * 183.26086 * 22 21 20 24 24 N 1.38669 * 125.55535 * 359.69427 * 16 14 13 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 31 31 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 32 32 H 1.09004 * 110.06238 * 323.43586 * 18 17 16 33 33 H 1.08999 * 110.06193 * 84.98651 * 18 17 16 34 34 H 1.09006 * 109.34377 * 67.06900 * 19 18 17 35 35 H 1.09007 * 109.34338 * 186.60923 * 19 18 17 36 36 H 1.08993 * 109.03418 * 181.65499 * 20 19 18 37 37 H 1.09000 * 109.02925 * 300.57792 * 20 19 18 38 38 H 0.97003 * 126.23487 * 357.63341 * 23 22 21 39 39 H 0.96998 * 125.32892 * 359.64517 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3413 2.6318 0.4325 16 6 0.0436 3.3251 2.6313 17 6 -1.1310 3.9200 2.8666 18 6 -2.3363 4.1129 1.9779 19 6 -3.0889 5.3374 2.5267 20 6 -3.3701 5.1596 4.0163 21 7 -2.1316 5.0324 4.7912 22 6 -1.1055 4.4333 4.2550 23 7 0.1316 4.1269 4.7606 24 7 0.8322 3.4231 3.7678 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 2.2719 2.1231 1.9979 32 1 -2.0185 4.2981 0.9518 33 1 -2.9760 3.2314 2.0190 34 1 -2.4822 6.2307 2.3777 35 1 -4.0321 5.4509 1.9921 36 1 -3.9286 6.0228 4.3781 37 1 -3.9715 4.2619 4.1598 38 1 0.4616 4.3522 5.6446 39 1 1.7283 3.0640 3.8613 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556106911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:44 Heat of formation + Delta-G solvation = 51.564477 kcal Electronic energy + Delta-G solvation = -21979.150520 eV Core-core repulsion = 18730.635022 eV Total energy + Delta-G solvation = -3248.515498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.96214 -38.86683 -36.66227 -35.28907 -32.98704 -32.50434 -31.11552 -30.22504 -29.77217 -27.17593 -25.24426 -23.80383 -22.72078 -22.35487 -19.96774 -19.48306 -18.77435 -18.33595 -17.11463 -16.09289 -15.66502 -15.44267 -14.97464 -14.92767 -14.42439 -14.24352 -13.64888 -13.42323 -13.12226 -12.94178 -12.76237 -12.22098 -11.97305 -11.65329 -11.36834 -11.34467 -11.11237 -10.95867 -10.91674 -10.44968 -10.41756 -10.30473 -9.77179 -9.53995 -9.20076 -9.14915 -8.70701 -8.61789 -8.06852 -7.03976 -6.22953 -4.33629 1.33260 1.78434 2.94095 3.18256 3.24532 3.24850 3.66105 3.70862 3.91020 4.26015 4.65401 5.07393 5.08869 5.16998 5.21530 5.29982 5.49468 5.78528 5.88095 5.98181 6.06340 6.14877 6.29877 6.34836 6.35873 6.41158 6.54518 6.73118 6.93016 7.06831 7.14333 7.25247 7.26504 7.48829 7.58025 7.72230 7.75822 8.04487 8.35478 8.39854 8.59087 8.82176 9.33591 10.82205 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029600 B = 0.004336 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.718964 B = 6455.723214 C = 6956.950580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.054 0.946 5 C -0.540 4.540 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.879 5.879 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.697 5.697 14 C 0.565 3.435 15 O -0.513 6.513 16 C 0.133 3.867 17 C -0.216 4.216 18 C -0.036 4.036 19 C -0.148 4.148 20 C 0.080 3.920 21 N -0.620 5.620 22 C 0.424 3.576 23 N -0.499 5.499 24 N -0.517 5.517 25 H 0.037 0.963 26 H 0.025 0.975 27 H 0.051 0.949 28 H 0.032 0.968 29 H 0.101 0.899 30 H 0.267 0.733 31 H 0.385 0.615 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.444 0.556 39 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.816 5.030 10.621 13.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.072 0.928 5 C -0.578 4.578 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.202 1.202 13 N -0.345 5.345 14 C 0.347 3.653 15 O -0.388 6.388 16 C 0.020 3.980 17 C -0.233 4.233 18 C -0.074 4.074 19 C -0.186 4.186 20 C -0.051 4.051 21 N -0.353 5.353 22 C 0.149 3.851 23 N -0.234 5.234 24 N -0.245 5.245 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.217 0.783 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.292 0.708 39 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -6.487 5.278 10.561 13.471 hybrid contribution 2.055 -0.392 0.099 2.094 sum -4.432 4.887 10.660 12.536 Atomic orbital electron populations 1.21860 0.98198 0.98385 1.01246 1.21953 0.92718 0.99509 1.02523 1.18910 0.94500 0.89312 0.80332 0.92801 1.21134 0.90422 1.39691 1.06555 0.92131 1.24865 0.98688 0.94622 0.95285 1.69866 1.35356 1.37123 1.09283 0.86503 0.84658 0.78358 0.77555 1.20156 1.21043 1.20157 1.46540 1.13809 1.55224 1.18901 1.17346 0.83473 0.79608 0.84889 1.90809 1.51390 1.58972 1.37647 1.20330 0.91724 0.99080 0.86882 1.21490 0.97166 1.08222 0.96462 1.20164 0.91860 0.97473 0.97936 1.22047 1.00832 0.98624 0.97126 1.21696 0.91514 1.00956 0.90918 1.72174 0.99783 1.29058 1.34330 1.19886 0.85922 0.90911 0.88336 1.42893 1.10918 1.57938 1.11698 1.43938 1.16368 1.57842 1.06387 0.94352 0.95608 0.92944 0.94925 0.88040 0.92331 0.78299 0.89189 0.90747 0.91885 0.91064 0.90643 0.92670 0.70848 0.71269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.16 0.32 -2.60 16 2 C -0.13 -2.90 5.45 -26.73 -0.15 -3.05 16 3 C 0.27 6.26 2.24 -69.08 -0.15 6.11 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.25 8.73 -34.44 -0.30 -13.55 16 6 H 0.06 1.41 7.74 -52.48 -0.41 1.00 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.40 11.29 55.43 0.63 -22.78 16 9 Si 0.90 19.59 29.54 -169.99 -5.02 14.57 16 10 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 N -0.70 -12.90 5.02 -55.85 -0.28 -13.18 16 14 C 0.57 10.36 6.40 -12.29 -0.08 10.28 16 15 O -0.51 -10.86 12.48 5.33 0.07 -10.80 16 16 C 0.13 2.05 7.01 -82.38 -0.58 1.47 16 17 C -0.22 -3.38 6.06 -102.03 -0.62 -4.00 16 18 C -0.04 -0.53 5.74 -27.30 -0.16 -0.69 16 19 C -0.15 -1.85 5.96 -26.48 -0.16 -2.01 16 20 C 0.08 1.04 6.93 -4.15 -0.03 1.01 16 21 N -0.62 -9.38 11.06 -58.72 -0.65 -10.03 16 22 C 0.42 6.23 8.35 -154.87 -1.29 4.94 16 23 N -0.50 -5.79 7.49 32.37 0.24 -5.55 16 24 N -0.52 -6.08 7.34 33.19 0.24 -5.83 16 25 H 0.04 0.78 5.64 -51.93 -0.29 0.48 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 1.16 7.84 -51.93 -0.41 0.75 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 30 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.38 5.92 7.63 -40.82 -0.31 5.61 16 32 H 0.09 1.42 7.23 -51.93 -0.38 1.04 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.44 3.72 8.96 -182.35 -1.63 2.09 16 39 H 0.44 3.88 8.15 -182.35 -1.49 2.39 16 LS Contribution 314.25 15.07 4.74 4.74 Total: -1.00 -29.56 314.25 -11.04 -40.59 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -7.71 Total: 8.69 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -3.29 Total: -0.42 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.18 Total: -57.37 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.07 Total: -10.80 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.56 -11.04 -40.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556106911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.159 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds